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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004916 ID=TCONS_00004916|Name=TCONS_00004916|organism=Clytia hemisphaerica|type=transcript|length=276bp
CTATTGTATATGATATTCTGGAAACATGGATAtatataataaaaagaaaa
catttattGGCAAAGCTGCTCCCCTTGGTTATGTTGCTGGTCTAGGAAGA
GGtGCATCAGGTTTCACAACAAGATCGGATATTGGTCCTGCAAGAGATAG
TTCAGATGCCCCTGATGAAGCACAAATACAACAACAAATGCAACAAGCCC
TCAAACGGAAGAAAGATGAAGATAATGAAGATCTGAATGAATCCAACTAC
GACGAGTTTGCTGGGTACGGTGGCAG Run BLAST on NCBI transcript from alignment at sc0000049:424130..430440- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004916 ID=TCONS_00004916|Name=TCONS_00004916|organism=Clytia hemisphaerica|type=transcript|length=6311bp|location=Sequence derived from alignment at sc0000049:424130..430440- (Clytia hemisphaerica)
CTATTGTATATGATATTCTGGAAACATGGATATATATAATAAAAAGAAAA
CATTTATTGGCAAAGCTGCTCCCCTTGGTTATGTTGCTGGTCTAGGAAGA
GGGTGAGTTTATTTCGACCAAAAGCTCTGTTTTTCGTGTTGCTCTTTTAG
TATAGTTAATGTAAAGATGGTAACCATGTGCTTATATCAAATCAAATTTT
GAGAATAAGATTAGGAGCAGGATTGAATGAATTGTTTAGATCATCATGGC
TGTTATTTTTATCTAGAAATAAGTAACTTTCTATTTTTTCTTGTTTTTTA
GTGCATCAGGTTTCACAACAAGATCGGATATTGGTCCTGCAAGAGATAGT
TCAGATGCCCCGTATGTACTTATTTACCCCATTAAGAAAAAATGAGAAAA
TATCAACCGCAATTTGATATGGAGTCTCCTGGACTGGCCATAATAATAAT
ACCAGGCTTTTAAGGCCCTTGAGAACGGGGGTGGTTTTTTTCTGTACCAA
TGCTCAATCTTGATTTAATTACTTGCTCTATGAAATTTGGCACACTATTA
CCTTTGTCTTAAAAGGAGAACCAAATATTATGTTGTAATTCGTCATGCAA
GCAATAATCAAAAGAGCAATCATAAGCTAACAAAGCCCTTATAAAAAAGT
TAGCTGAGTTTTAAAGTTTTGTTTAATTTGTTTTTAAAATCCTTATAACA
TGAATTGCAATCAAAGTTCACATTAAAAATAAACTTAAGCTGAAAATGTG
TAAATTTGTATGGAAAATCAAAGATATCATCATGCTCATGGTGTAACAAT
ATTTACACGTCAAGATCTTTTTTGATTTTGAAACTAGTCTAATTCAAATT
GTCTAATTTGAATTGCAGGTCACAGGTCACTCACTGGCCAGTACTGACAG
GTCAGCTTTAATTACTGTAAAACACAAAGAAAATATTTGAAAACACTTGT
TTTGTCAAAATATTATTTTGAAGGTATTTTATTGATCAAGGATTTTTAAA
AAGGTGAAAATCTATCCACATGCTTACCACATGCTTTTGCATTCTGTGCC
ATGTATAACAAGGACCTGAATTACATACTATTTGGACCTAACTCAGAGGT
CCTTTAAATTAACCTTTGTCTATTCGTTTGTCAGTCTGTCCGTCAGTCCG
TCTGTCCGTCTGTTACCAGCTTTTCTCAAGATTGGTCCATTAGTTTTTTC
TGATTTTTGGCACGAAGATGTGATTAGCAATGCCGAAAACATGGCGGAGT
CCGATTTTTGAGAAAAATCTTTTTCCTGCTGAAAATGCCAGAAATATGAT
GGAAATCGTTATAATTCTTCGTTTTTTCGCACAAAAACATTATTGATAAC
AATGCCCACCATCAAGCATGATTCAATTGTCAATAAAACTGATTTTTGAA
GCCGGAACTTTCTTAAAATTACCCGAACAGCCAATTATCGGCGGAAAAAG
GGTTTTTCTTGAATTTCTTGAGCTGTACTTTATATTTTTTCATAAAATTT
TACATACTGATGCAAAATAGAAATACCTAAAATGTGACAGAGCTCGATTT
TTGAAAAAAAATTTCCAGCCGAAAAGATTTTCTCGAGATTTCAATGATAA
TTTTATGAATGATAAATTTAAGGCGTTTTGCATTCTCGCTATATGTAAAC
GTTATATTTTCTGACTGATTGTTTTCATTTTTCTACTTATTACTATCTAA
CTTTCATCATTAGGTAGGTCCATTCAGCCTCTAGCTGAATTATATTACAC
ATATATCATACACAACTTAGTCAGCGTGTTTCAAACACACTGTTGGCAAC
CGCTTCAAAAACTTAATTGGAGAGAGAACTTTTTATAGTATTAATCAGAA
AATTTTTTCACTTCATTCAGCTTTTCTTACCGGTTACTACCGGTTAACAA
ATCTTTATCATAAAAATGTCTGATACAGACCTTTGGCTGCTGCTTAGAAC
TGAGCAGGTTACGTCAAAATTAAGAGTCAAGAAAATTAGGACGGGAAGAA
GTTTGTACTTACAATTACTCCAACTACGTTATCATCTTTTTGGACCTACC
TTAAGGTAGTCCTTTAAATTAACCCTTGTCCGTTCGTTCGTCTGTTGCCA
GCTTTTCTCAGGATTGGCTCATTAGTTCTTCTATTTTTTTGAACAATGAT
GCAAAATGGCAATGCCCAAAATGTGACGGAGCCAGATTTTCAAAAAAAAA
AAATTTCTGGTCGCCAGGGAAATGTCCCGGAAAAAGCGTTTTTTTGGGAT
TTTCTCGAGATTTTATCATTTTGTTTTTTCTGATATTTTGTACATAGAGG
CGCGTTAGTACAGCCAAAAAGTAGTTGAAAACCGTTTTTCGGAAAAAAAA
ATTTCCGGCCTGTAGAACAGGAAATGTGCCGGTAATCACCGTTTTTTCGT
ATTTCCGTGACACTTTTTCAACTTAGTTGATCGTTTTTTTACAGAAAAAG
GTTCTCTATGGTGATACTCAAAACTTTGTATCATTTAATTTTCAATAAAA
TCATTTGTTCAATTCGGAACTCCTTAAAAATCGCCGGAACAGCCGAAAAC
CGGCGTAAAACAGATATCCTTCATTTTTTCGAGTTATACTTGACAGATTT
TCATGATTTTTTGCACAATGATGCAAAATGGCAATTCCGAAAATGTGACG
GAGCCCGATTTTCGAAAAATTCCGGTCACCCGGGCCGGAAATGTCTCGGA
AAAAGCTGTTTTTGGGGATTTTCTCGAGATTTTATCATTAGTTTTTTCTG
ATTTTTTGTACATAGAGGCGCGTTAGTACTGCCAAAAAGATGTTGAAAAC
CGTTTTCCGAAAAAAAAATTTTTCAATCCTGTAGAACCGGAAATGTGCCG
GAAATCGCCGTTTTTTTGTATTTCCGTGACACTTTTTCAACTTATTTGAT
TGTTTTTTTTACAGAAAAAGGTTCTCTATGGTGACCCAAAACTTTGCATT
ATTTAATTTTCAATAAAATCATTTATTCAATCGGGAACTCCTTAAAAATC
GCCGGAACAGCCGAAAACCGGCGTAAAACAGATATCCTTCATTTTTTTGA
GTTATACTTGTCAGATTTTCACCATTTTTTGCACAATGATGCAAAATGGC
AATGCCGAAAATGTGACGGAGCCTGATTTTCAAAAGAAAAAATTTCCCGG
CCGAAAATGCCAGAAATATGCCGGAAAAACAGGTTTTTTGGCATTTTCTG
ATTTTTTGCTCAAAGATGCGCATTAACATCATTCAAAAACATTATTAATA
GCAATGTCCACCATCAAGCATGTTTCAATTTTCAATAAAATTGATTTTTG
AAGCCGGAACTATTCAAAAATTGCCGGAACAACCTATTTTCGCCAGAAAT
ACAGTATTTCTTGAATCTCTCGAGCTGTACTTTATAATTTTTTATTAAAT
TTTGCACACTGATGCAAAATGACAATACCTAAAATGTGACGGAGCTCGAT
TTTCAAAAAACATTTTTTTTCGGCCGAAAATGCCGGAAATATTCCGGAAA
AACCGGTTTTTTGATATTTTCTCAAATTTTCATCCTTAGTTTTTTCTGAA
TTTGCAGAAAGATGTGTATTCACAATGCTCAAAACATGACAGAGTTTGAT
TTTTGAGAAAAATTTATTTCCGGCCAAAAATGCCGGAAGTTTCCGTTTTT
GCAGATTTTCATTGGATTTTTTCGTTTTAAGTCTTTGTTTTTTTTCAAAC
AAAAACATTATTTATAATTTTCAATGAAACTGATTTTGGTCAGAACAGCC
GAGAATCGCCGGATTTCTTGAATTTCTCGAGCTTTTCTTGTATTATTCTG
CATTTTCATACTATTGTTGTCATTTTTCAATTGTCTTATTAGATCAATCT
TCAGGTAGGTCCATTCAGCATATAGCTTGTTAATCATAGAATTATAGTGT
TTCAATCCCTGACTATGTTTTTATTGCTATCAAAATCGTTGTAGTAATGT
TTACGCATGCGTAAAAAAAAATCTTGTTGTAAATTGGTGCATAAACCTCC
TATTTTGTGGTAATGTCTTATATTAGATTTGGTCTAATAATGTCTTATAT
TACATTTGGTCTAATGTATTCTCAACTTCAGTTGAGTTAGAATCTGAGAA
TGTGTGTGTGTCTGTCTGTCTGTGTCTGTGTATGTCCCAAAACTTTGGGG
CAGCCTGGAGACTTCAAAAATTGTTCGATTTGGCTGAAATTTGGCACACT
TGTTCCTTGGGTGAATATCTGGGGGTGTTTTTTTCATTTTTCAAAATTTT
TGATTTTTGGGGCCTGGGGACGAGTTTTCGCCAAAACGAGGCTAAAACTT
TGGGGCAGCCTGGAGACTTCAAAAATGGTCGGATTTGGCTGAAATTTTGC
ACACTTGTTCCTTGGGTGAATATCTGGGGGTGTTTTTTTCATTTTTCAAA
ATTTTTGATTTTTGGGGCCTGNNNNNNNNNNNNNNAACGAGGCTAAAACT
TTGGGGCAGCCTGGAGACTTCAAAAATTGTTCGATTTGGCTGAAATTTTG
CACACTTGTTCCTTGGGTGAATATCTGGAGGTACTTCTTTCATTTTTCGA
AAAATTTTGATTTTTGGGGCCTGGGGACGAGTTTTTCGCCAAAACGAGGC
TAAAATTTTGGGGCAGCCTGGAGACTTCAAAAATTGTTCGATCTGACTGA
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTTTGCACACTTGTTCCTTGGGTGAATATCTGGGGGT
GCTTTTTGCATTTTTCAAAAATTTAGATTTTTGGGGCCTGGGGACGAGTT
TTTTGCCAAAACGAGGCTAATGCTTTGAAGCAGCCTACAGGCCTCCAAAA
TGGTCGGATTTGGTTGAAATTTGGCACACTTGTTCATTGGGTAAATATCT
GGGGGTCTACAATTGGCCCTATGAATAATTTGAAGCCACTGAAGTTGAGC
CCAGTGCGTTGCGCACGTTCGACTATTATATAACTTAAGTGACATTTTGT
CAATATTTGCTGCGTTACAATTTTCCAATCTGCAGCTTGACCTGTGACCT
GTGCTTCAAACTATAGTCAGAAAATTACAGTAATGTCCAAAAGCTTTATT
ACTTACTGAATCAGGAGCTAAAAGTATATTTATGGTGGTTAAGAAATAAA
CCCCCCCCCCCAAAAAAGAAACAGGATTGATTGACAAAAAGGGATACAAA
GAGTGAAAGTTTATTTTAGGGTTTTCAACCTTTTTCAGATATTTAGGCGA
TATTTGGGACACTTTTTTTGAAGTTTTTTTGCAAAAGGGAGAATAGCTTA
TTCAAAGCTAGCCTTTTTGATTTTTTTGTCTAAAGTTAGTAAAGTTGTTC
ATGCTAAAGATCTCTAATCTTTTAAATGTATGTGAACCACTTCCCTCCAT
TCAGAGAGTCAGTGATAAATATTTTCTCTTTATTGTTGACCATTACAACT
TGTTTGCTTTGGTTTACGCAGTGATGAAGCACAAATACAACAACAAATGC
AACAAGCCCTCAAACGGAAGAAAGATGAAGATAATGAAGATCTGAATGAA
TCCAACTACGACGAGGTGTTCCTTCTTTTCCTCAAACCTTTTTCACTGAC
CATAACATTTCAAAATTAGTCGAATCATCATAGCTGAACTCCTTTCTAAA
TAATTGTAAATGACGCTAACATTCAGCTAAATCACTTTAAAGTTTTAATC
GTACTGCTAAAACTAAATAAATTGATGTAGAATTTGGTCGTTGGGAGTAT
ACATCGATCAACTGTATAAAATTACAATATCAAAATCAGTACCTTCCATG
TTACAATATTCATAATTGATAAAAAATAGTCTTTTCATAAATAAGAATAA
TCTTTTCTTTTCTTAACAAAAAAATCAATCACAAATTCAAAATAATAAAC
TGTAATATTTCCAAGAAATTTATCTTCAGATTCAACCTTTAGTCGAATGT
GAAAGATGTAGTTTGAAGAACTTGGAAAGAATCAAGTTGTTATAGAACTT
GAGTGGGGCAGAAATAAGGTTATACGACTGTTCACTTCTAGTTTGCTGGG
TACGGTGGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004916-exon-sc0000049-1575043694:430339..430440 | TCONS_00004916-exon-sc0000049-1575043694:430339..430440 | Clytia hemisphaerica | exon |
| TCONS_00004916-exon-sc0000049-1575043694:430080..430139 | TCONS_00004916-exon-sc0000049-1575043694:430080..430139 | Clytia hemisphaerica | exon |
| TCONS_00004916-exon-sc0000049-1575043694:424626..424719 | TCONS_00004916-exon-sc0000049-1575043694:424626..424719 | Clytia hemisphaerica | exon |
| TCONS_00004916-exon-sc0000049-1575043694:424130..424149 | TCONS_00004916-exon-sc0000049-1575043694:424130..424149 | Clytia hemisphaerica | exon |
| TCONS_00004916-exon-sc0000049-1510915933:430339..430440 | TCONS_00004916-exon-sc0000049-1510915933:430339..430440 | Clytia hemisphaerica | exon |
| TCONS_00004916-exon-sc0000049-1510915933:430080..430139 | TCONS_00004916-exon-sc0000049-1510915933:430080..430139 | Clytia hemisphaerica | exon |
| TCONS_00004916-exon-sc0000049-1510915933:424626..424719 | TCONS_00004916-exon-sc0000049-1510915933:424626..424719 | Clytia hemisphaerica | exon |
| TCONS_00004916-exon-sc0000049-1510915933:424130..424149 | TCONS_00004916-exon-sc0000049-1510915933:424130..424149 | Clytia hemisphaerica | exon |
| TCONS_00004916-exon-sc0000049-1491911889:430339..430440 | TCONS_00004916-exon-sc0000049-1491911889:430339..430440 | Clytia hemisphaerica | exon |
| TCONS_00004916-exon-sc0000049-1491911889:430080..430139 | TCONS_00004916-exon-sc0000049-1491911889:430080..430139 | Clytia hemisphaerica | exon |
| TCONS_00004916-exon-sc0000049-1491911889:424626..424719 | TCONS_00004916-exon-sc0000049-1491911889:424626..424719 | Clytia hemisphaerica | exon |
| TCONS_00004916-exon-sc0000049-1491911889:424130..424149 | TCONS_00004916-exon-sc0000049-1491911889:424130..424149 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049 | supercontig | sc0000049:424130..430440 - |
Blast
BLAST of TCONS_00004916 vs. Swiss-Prot (Human)
Match: PRP6 (Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PRPF6 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 4.307e-17 Identity = 45/83 (54.22%), Postives = 55/83 (66.27%), Query Frame = 2
Query: 41 KKKTFIGKAAPLGYVAGLGRGASGFTTRSDIGPARDSSDAPDEAXXXXXXXXALKRKKDED-----NEDLNESNYDEFAGYGG 274
KKK F+G APLGYV GLGRGA+GFTTRSDIGPARD++D D+ + + K +EDLN++NYDEF GY G
Sbjct: 4 KKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNQAADDDDEDLNDTNYDEFNGYAG 86
The following BLAST results are available for this feature:
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