TCONS_00005078 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005078
Unique NameTCONS_00005078
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length393

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005078 ID=TCONS_00005078|Name=TCONS_00005078|organism=Clytia hemisphaerica|type=transcript|length=393bp
cacttttttcgcaaatttcgagtcccacgtagggtccatttttcgaacct
cagcggagcacccccgtcggtcgacaagggtagtacccccccgggggtAG
CTTGTATACTGTTTATGACGTCTAAGCAAGTTGGAACTGTgtagtgaaaa
aaaattcttctcaAAGCTAGACTAGACCATTAAGACGATTGAATAATTTT
CAATGAATGAACTTTGATTGAACCATttcaaatcataattttcaCAGATC
ACAAGTGGATGACAATTTCCTGGTGGACTCGTTTTAGTATAGCTACAGCA
AATTTGATAAACTTCTCACACCAAAGCTTCAAAATCTCCCTTATCATCTT
TAAGACAAGGTGTTTCCGAGCTACGCTTCATAGAGATGTCTAG
Run BLAST on NCBI

transcript from alignment at sc0000050:51203..51595

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005078 ID=TCONS_00005078|Name=TCONS_00005078|organism=Clytia hemisphaerica|type=transcript|length=393bp|location=Sequence derived from alignment at sc0000050:51203..51595 (Clytia hemisphaerica)
CTAGACATCTCTATGAAGCGTAGCTCGGAAACACCTTGTCTTAAAGATGA
TAAGGGAGATTTTGAAGCTTTGGTGTGAGAAGTTTATCAAATTTGCTGTA
GCTATACTAAAACGAGTCCACCAGGAAATTGTCATCCACTTGTGATCTGt
gaaaattatgatttgaaATGGTTCAATCAAAGTTCATTCATTGAAAATTA
TTCAATCGTCTTAATGGTCTAGTCTAGCTTtgagaagaattttttttcac
tacACAGTTCCAACTTGCTTAGACGTCATAAACAGTATACAAGCTacccc
cgggggggtactacccttgtcgaccgacgggggtgctccgctgaggttcg
aaaaatggaccctacgtgggactcgaaatttgcgaaaaaagtg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002874XLOC_002874Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005078-exon-sc0000050-1491911889:51203..51595TCONS_00005078-exon-sc0000050-1491911889:51203..51595Clytia hemisphaericaexon
TCONS_00005078-exon-sc0000050-1510915933:51203..51595TCONS_00005078-exon-sc0000050-1510915933:51203..51595Clytia hemisphaericaexon
TCONS_00005078-exon-sc0000050-1575043694:51203..51595TCONS_00005078-exon-sc0000050-1575043694:51203..51595Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:51203..51595 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.499298	0.626057	2.97119	3.62942	5.84974	2.58736	4.54231	5.39187	5.47284	18.5339	11.7904	7.8708	17.1043	26.3462	57.5015	41.8733	60.8243	63.0235	29.0004	22.5625	9.1114	9.71204	27.1574	28.0472	0.677349	0.302251	46.98	91.0541	183.271	158.769
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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