TCONS_00005086 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005086
Unique NameTCONS_00005086
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length232

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005086 ID=TCONS_00005086|Name=TCONS_00005086|organism=Clytia hemisphaerica|type=transcript|length=232bp
GAAGCTTGATCGATGTTTCCGTGAGTCTTCTTTCCGAAGGGTAGTATAAA
TGAGAGACGATCCGGATCTTGGTCAATCTTTGTAGCTAATTGCCAGGAGC
GCTGTATATCTCAAAATAAACTATAGTGATATACAACATTCGTGGGTTAT
CTATGAACTGTAGCTCATCCAATGTTGTATACCTTCTTAGATGCAAAACC
TGCGGTATTCAGTATGTCGGTAGTTGCACGNN
Run BLAST on NCBI

transcript from alignment at sc0000050:114867..115098

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005086 ID=TCONS_00005086|Name=TCONS_00005086|organism=Clytia hemisphaerica|type=transcript|length=232bp|location=Sequence derived from alignment at sc0000050:114867..115098 (Clytia hemisphaerica)
NNCGTGCAACTACCGACATACTGAATACCGCAGGTTTTGCATCTAAGAAG
GTATACAACATTGGATGAGCTACAGTTCATAGATAACCCACGAATGTTGT
ATATCACTATAGTTTATTTTGAGATATACAGCGCTCCTGGCAATTAGCTA
CAAAGATTGACCAAGATCCGGATCGTCTCTCATTTATACTACCCTTCGGA
AAGAAGACTCACGGAAACATCGATCAAGCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002882XLOC_002882Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005086-exon-sc0000050-1491911889:114867..115098TCONS_00005086-exon-sc0000050-1491911889:114867..115098Clytia hemisphaericaexon
TCONS_00005086-exon-sc0000050-1510915933:114867..115098TCONS_00005086-exon-sc0000050-1510915933:114867..115098Clytia hemisphaericaexon
TCONS_00005086-exon-sc0000050-1575043694:114867..115098TCONS_00005086-exon-sc0000050-1575043694:114867..115098Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:114867..115098 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.02296	0	3.47473	0	22.0722	29.433	30.249	40.302	22.4127	12.8131	6.21836	6.81284	4.76236	4.23922	1.16174	2.49345	0.76793	1.57421	2.17485	3.41374	0	0	2.34581	2.13268	3.29491	3.92084	1.40268	0	0	2.31359
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005086 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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