TCONS_00005190 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005190
Unique NameTCONS_00005190
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length626

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005190 ID=TCONS_00005190|Name=TCONS_00005190|organism=Clytia hemisphaerica|type=transcript|length=626bp
ttatagatCAAGAAGAATTATGTCTACCATCTTTTTGTGTCGGTAAAGCA
GATGGTTTTTATCCTCACCACACGAACAGTCACATGTATATTAAATGCAC
CAATCAGAAGCCGTCCTGTCAACCCTGTTATCCAACCAATTTCGTTTTTG
TTAAACGTTGTGGAATATGTATGGCGAATAAAGCAGaaaattgcaaAGTG
GAGCAAAATTGTCCAAAAGATCTGTGCAAGGGAAAGAGCAATGGGTTATT
CCTGCACGTCCACCTGAAGAATATTTATGTTAATTGCTATTTCGAGCGAA
ACTTCGGATGTTACGAGTGTCCTGATGAACATGAATTTGATGATGTTGAG
AAAAAGTGTGTCTGGAAACCTAACCTGGAGTTAGATTGATAAAATTCATG
TTTTAGGTTATCAGACGGATCATTATAACTCATGAATAAAATCACTTTAA
AGTGGGAGAGCACAGGAATggtttaaaattcattttctaattcttatgta
aataaaatttagatttatttaaaaatatattgatATTATAATTAATTATT
ATTATAGATATATAGAATTATTTATTATATTAtcatttaaaagtatttta
agttttttaagttattttcaatggag
Run BLAST on NCBI

transcript from alignment at sc0000051:170382..171527-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005190 ID=TCONS_00005190|Name=TCONS_00005190|organism=Clytia hemisphaerica|type=transcript|length=1146bp|location=Sequence derived from alignment at sc0000051:170382..171527- (Clytia hemisphaerica)
TTATAGATCAAGAAGAATTATGTAAGTATCAACTTTGAAATATATTTCCA
ACGATGACTGGAGCATGTCAAATGTGATGGATATAAAAGACATTCTTTCA
AATAATAATAACATGGTATAGTTTACTGAAATAACCGAAACGAACGTTGA
CTGAACTATCAACTTTCATTTCTAGGTCTACCATCTTTTTGTGTCGGTAA
AGCAGATGGTTTTTATCCTCACCACACGAACAGTCACATGTATATTAAAT
GCACCAATCAGAAGCCGTCCTGTCAACCCTGTTATCCAACCAATTTCGTT
TTTGTTAAACGTTGTGGAATATGTATGGCGAATAAAGCAGGTTAGAATTA
CTATTTTTTAAGCAGAAAGCTTTTGATGCTGATATTGGCAAAAAGATCTT
CAGTCATCACATTATTATTCATTCACAACAAAGGTAGTACTAGGGAGCCT
TGACAGACACTAATCAATTTCTGACTTTTTTCTTTTTTTAGAAAATTGCA
AAGTGGAGCAAAATTGTAAGCATTGTATTATTTTCTGACCCATCCTGGAA
GAACTCTGGTTAAAAAAAAAGCAAATTCAGCAAAAAGATTCATGTCTATA
TTGAATCTCATCGGGTAGCTACGTTTTCGGCAAGCATACATACAATAATT
AAAGTTAAGATAATTAGGTTTACAATAGGATAAATATGTTGACCTTTTCA
ATTTTTAATTTACTTCTCCTATTTTTTCAGGTCCAAAAGATCTGTGCAAG
GGAAAGAGCAATGGGTTATTCCTGCACGTCCACCTGAAGAATATTTATGT
TAATTGCTATTTCGAGCGAAACTTCGGATGTTACGAGTGTCCTGATGAAC
ATGAATTTGATGATGTTGAGAAAAAGTGTGTCTGGAAACCTAACCTGGAG
TTAGATTGATAAAATTCATGTTTTAGGTTATCAGACGGATCATTATAACT
CATGAATAAAATCACTTTAAAGTGGGAGAGCACAGGAATGGTTTAAAATT
CATTTTCTAATTCTTATGTAAATAAAATTTAGATTTATTTAAAAATATAT
TGATATTATAATTAATTATTATTATAGATATATAGAATTATTTATTATAT
TATCATTTAAAAGTATTTTAAGTTTTTTAAGTTATTTTCAATGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002951XLOC_002951Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005190-exon-sc0000051-1575043694:171507..171527TCONS_00005190-exon-sc0000051-1575043694:171507..171527Clytia hemisphaericaexon
TCONS_00005190-exon-sc0000051-1575043694:171188..171352TCONS_00005190-exon-sc0000051-1575043694:171188..171352Clytia hemisphaericaexon
TCONS_00005190-exon-sc0000051-1575043694:171013..171036TCONS_00005190-exon-sc0000051-1575043694:171013..171036Clytia hemisphaericaexon
TCONS_00005190-exon-sc0000051-1575043694:170382..170797TCONS_00005190-exon-sc0000051-1575043694:170382..170797Clytia hemisphaericaexon
TCONS_00005190-exon-sc0000051-1510915933:171507..171527TCONS_00005190-exon-sc0000051-1510915933:171507..171527Clytia hemisphaericaexon
TCONS_00005190-exon-sc0000051-1510915933:171188..171352TCONS_00005190-exon-sc0000051-1510915933:171188..171352Clytia hemisphaericaexon
TCONS_00005190-exon-sc0000051-1510915933:171013..171036TCONS_00005190-exon-sc0000051-1510915933:171013..171036Clytia hemisphaericaexon
TCONS_00005190-exon-sc0000051-1510915933:170382..170797TCONS_00005190-exon-sc0000051-1510915933:170382..170797Clytia hemisphaericaexon
TCONS_00005190-exon-sc0000051-1491911889:171507..171527TCONS_00005190-exon-sc0000051-1491911889:171507..171527Clytia hemisphaericaexon
TCONS_00005190-exon-sc0000051-1491911889:171188..171352TCONS_00005190-exon-sc0000051-1491911889:171188..171352Clytia hemisphaericaexon
TCONS_00005190-exon-sc0000051-1491911889:171013..171036TCONS_00005190-exon-sc0000051-1491911889:171013..171036Clytia hemisphaericaexon
TCONS_00005190-exon-sc0000051-1491911889:170382..170797TCONS_00005190-exon-sc0000051-1491911889:170382..170797Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:170382..171527 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	1.79754	1.43559	0.628206	0.818323	1.33775	1.02415	0	0	0	0.00108076	0	0	0.0822587	0.340626	0	0	0	0	0	0	0.0944305	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005190 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top