TCONS_00005208 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005208
Unique NameTCONS_00005208
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length476

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005208 ID=TCONS_00005208|Name=TCONS_00005208|organism=Clytia hemisphaerica|type=transcript|length=476bp
ctaaaaaatGTTACTATCGGAAGACAATATACAGATCGGTCAATCGTCAA
ATTACAGAGTATGAAGATTTCAACGGAAAACAATGCAAAGTTGGATATGG
GATGGTTTTCTCCGTTGCCAGAAATGGACGTCTTTGCATCCctCTTCAGT
ATTCAGTTCACCAAGTGTTCAAAGTTGATAGCATTGTTGGTGCTCTCGTT
TGGAACGTGACAAGTGCTGCAGCAGGTGATCAGATGAAGCTTCTATATAA
GGGCGAAAAATGCTACAATGCAACAGTCACTCATAAAGACTTCCACTTTA
TCAAAGGAATCGGGCAAACTCTTGCCAAAGTTTCTTTTAGTAAAAGAGCT
CTTTTTAAAATTGATCTTCAAAATGGAAGCGGACCGGTGAGCCTTTTTAT
CTTGAACACAACGTATGACGATGGTGGAGTTTATCAGCTGTATTCAAAAC
ACGGTCCCCTCGTCTTCAAAATCAAC
Run BLAST on NCBI

protein sequence of TCONS_00005208-protein

>TCONS_00005208-protein ID=TCONS_00005208-protein|Name=TCONS_00005208-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
KKCYYRKTIYRSVNRQITEYEDFNGKQCKVGYGMVFSVARNGRLCIPLQY
SVHQVFKVDSIVGALVWNVTSAAAGDQMKLLYKGEKCYNATVTHKDFHFI
KGIGQTLAKVSFSKRALFKIDLQNGSGPVSLFILNTTYDDGGVYQLYSKH
GPLVFKIN
Run BLAST on NCBI

transcript from alignment at sc0000051:434312..437568-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005208 ID=TCONS_00005208|Name=TCONS_00005208|organism=Clytia hemisphaerica|type=transcript|length=3257bp|location=Sequence derived from alignment at sc0000051:434312..437568- (Clytia hemisphaerica)
CTAAAAAATGTTACTATCGGAAGTAAGTGCGATATTAGAAGTTGAGCTTT
TGTGATTTCTGCGCACTTTCGTAATTGTAACCTTGCGCACTTTTTGAACA
TTTTTTATTCAATATTTTTTAATGTTTTGCGGACTCTAAAGCATCCAATT
TTTTAGGTAAATGGACAAAATTACTCGAAAACATTTTTAGGCTTAAAAGG
CAAAAGTTATTAAAAACAACAGAAGGCTTCAAAAATTTTGGATACTTTTA
TTAAAAAACGTATAATATAACTGTATGAAAAGTTGAAAGAATAAGTTATC
GTTGTTTCAGGACAATATACAGATCGGTCAATCGTCAAATTACAGAGTAT
GAAGATTTCAACGGAAAACAATGCAAAGTTGGATATGGGATGGTTTTCTC
CGTTGCCAGAAATGGACGTCTTTGCATCCGTAAGTAGTTTGTCAATGCCT
GTGTGAGTTATCTGTGATCAACTAGCAATGAATCGTATTTAGCTTTCTCT
GAAATTAACCTTGCAAGAATGGTCTATCAAATTTTCAGTGTCCATCCCAT
GTTTCAATCACATCATTCTCAACTTCAGTTGAGCTATAATCTGAGAATGT
CTGTATGTCTGTATGTATGTCCGTCCGAAAACTTTAGGGCAGGCTGGACA
CTTCAAAAAAGGTCGGATTGGGCTGAAATTTGGCACACTTGTTCCTTGGG
TGAATATCTGGGGTTATTTTTTTCATTTTTTGAAAATTTTGATTTTTGGG
GCCTGGGGACGAGTTTTTCGCCAAAACGAGGCTAAAACTTTGGGGCAGCC
TGGACACTTCAAAAATGGTCGGATTTGGCTGAAATTTGGCACACTTGTTC
CTTGGGTGAATATTTNNNNNNNNNNNNNNNNNNNAAAATTTTGATTTTTG
GGGCCTGGGGACGAGTTTTTCGCCAAAACGAGGCTAAAACTTTGGGGCAG
CCTGGACACTTCAAAAAAGGTCGGATTTGACTGAAATTCGGCACACTTGT
TCCTTGGGTGAATATCTAGGGGTGTTTTTTTCATTTTTTGAAAATTTTGA
TTTTTGGGGCCTGGGGACGATTTTTTCACCAAAACGAGACTGGCAGCCTG
GACACTTCAAAAAAGGTCGGATTTGGCTGAAATTTGGCACACTTGTTCCT
TGGGTGAATATCTGAGGGTGTTTTTTTCATTTTTTGAAAATTTTGATTTT
TGGGGCCTGGGGACGATTTTCAGCCAAAACGGACAAAGTATATTTGCTAC
CTAATACTAAATATTTGAAATGTTACAATTGGGCCTTCTAATAACGGGAA
AATCTGAAGTTGAGCCCAGTGCGGTGCGCACGTTCGACTATTATTTAAAG
AATAGAGAATGGCGAGTATATACCCCTGATGTTTGACTCATTGAATTTGA
AAACCTGAAGGGGCTAGAGAGGAATTTTCAACCTTACTCAAGCAAGAAAA
AGTGAAGCCTTAATTTTGCCTTGCATTTAGAAATTTTCTTTGAAAAACAT
ACCGATCACGTGTTTTGGATGGGAAATAAGCGGCTTCATTTCCAATCTAG
GAGTTTCGGATCTAGCCACTTCGGGGCTTTGAATTCAATGGATAGACTTA
AGCAGATAACATAAAATTAGTTTTTCAAATTTTCTGAGACTGAAAAGAAT
TCCTTTCTTTGACCCTCAAATGTGTAACAGTAATTACCTAAGGGGGTTTG
TAGGGTTTCGTAATACCGTTTTTCCGTCACAACACCGTCACACCGGTTTG
TAGAGGTTAAAATAACAGAATACAGACAAAAAAATATGGCTATCACCGTC
ACCATCTGAACTTAAAATACCGTTTTCCCGTCTCTTTTTTCCTCAAAACC
CATAATACCATACTAAAAAAGGTCCAATCCCGTCACACCGTAATAGAACA
ACCCCTACCTAGATAAAATGTACATAAAATACGTAAAAAAAGCGACAAGA
TGGAGTTTTTACAAGCTCTTATTTGATTTGGTTGGTCGTTAACCAGTAAT
AAAACTATTTTGTTACTTTTTCTAAAGAACGCGTCATTTTTATTACTTCG
AATGACCAATTATTAAAGTATTATGAAAACTCCAATAAATCATTTTTTTA
ATAAGAATGTTCAACAGGATTTGAAAGCATTGAATTTGAATTTTAGCGTT
GTTTTAGTTGCGGTGTACTCTACTGTAATTTACTACCGTGAAAAGCACAG
CTCAAAATCATATATTTACGCTGTGCCGACGAATCGAGATTCTATTCATC
GCGCAATCAGCGAAGACAAAAGTAACCATGACGACCATCCAAGATCTTGG
ATGAGCGTCATAGTCGATATTTTTATTCCCGTCGTTGAAAACACAACTTA
CAAAAAGTCATCAATGCTTCGTAAAAAGAGTCAGTGATAGAGAATCATAA
CATAAAGTCTGTCTATTATTTCGATTCAATTAAAGTGACATTTCCATAAT
TAAAAGTAAGTAAAGTTAGTAATTACTGTTATACATTTGGGGATCATGTA
AAAGATTTCTTTCGAAATAAACTCATTTCAACTCTTCAACTACACTTGGA
GGTTTCTGGGGAATTCATAAATAGTAAACTGCATACTGATACAGTCTGCT
AGACATTAATATGGTAATATTTGCTCTTCATCTTTGATNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTACAGTGATTAGATTGACACATGCGCGATAAAATTT
CTATTATTTGTCTTCAGAGGTTAATATATTTTTTGAAAACTTAACCTCTG
ATACTCAGGGTAGTAATTTACTCGACTTGAATTATCTTTGACTGTTAAGA
TCTCATTTTTTTTGAATTTCAGCTCTTCAGTATTCAGTTCACCAAGTGTT
CAAAGTTGATAGCATTGTTGGTGCTCTCGTTTGGAACGTGACAAGTGCTG
CAGCAGGTGATCAGATGAAGCTTCTATATAAGGGCGAAAAATGCTACAAT
GCAACAGTCACTCATAAAGACTTCCACTTTATCAAAGGAATCGGGCAAAC
TCTTGCCAAAGTTTCTTTTAGTAAAAGAGCTCTTTTTAAAATTGATCTTC
AAAATGGAAGCGGACCGGTGAGCCTTTTTATCTTGAACACAACGTATGAC
GATGGTGGAGTTTATCAGCTGTATTCAAAACACGGTCCCCTCGTCTTCAA
AATCAAC

Coding sequence (CDS) from alignment at sc0000051:434312..437568-

>TCONS_00005208 ID=TCONS_00005208|Name=TCONS_00005208|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at sc0000051:434312..437568- (Clytia hemisphaerica)
CTCTTCAGTATTCAGTTCACCAAGTGTTCAAAGTTGATAGCATTGTTGGT
GCTCTCGTTTGGAACGTGACAAGTGCTGCAGCAGGTGATCAGATGAAGCT
TCTATATAAGGGCGAAAAATGCTACAATGCAACAGTCACTCATAAAGACT
TCCACTTTATCAAAGGAATCGGGCAAACTCTTGCCAAAGTTTCTTTTAGT
AAAAGAGCTCTTTTTAAAATTGATCTTCAAAATGGAAGCGGACCGGTGAG
CCTTTTTATCTTGAACACAACGTATGACGATGGTGGAGTTTATCAGCTGT
ATTCAAAACACGGTCCCCTCGTCTTCAAAATCAACGACAATATACAGATC
GGTCAATCGTCAAATTACAGAGTATGAAGATTTCAACGGAAAACAATGCA
AAGTTGGATATGGGATGGTTTTCTCCGTTGCCAGAAATGGACGTCTTTGC
ATCCAAAAAATGTTACTATCGGAACTCTTCAGTATTCAGTTCACCAAGTG
TTCAAAGTTGATAGCATTGTTGGTGCTCTCGTTTGGAACGTGACAAGTGC
TGCAGCAGGTGATCAGATGAAGCTTCTATATAAGGGCGAAAAATGCTACA
ATGCAACAGTCACTCATAAAGACTTCCACTTTATCAAAGGAATCGGGCAA
ACTCTTGCCAAAGTTTCTTTTAGTAAAAGAGCTCTTTTTAAAATTGATCT
TCAAAATGGAAGCGGACCGGTGAGCCTTTTTATCTTGAACACAACGTATG
ACGATGGTGGAGTTTATCAGCTGTATTCAAAACACGGTCCCCTCGTCTTC
AAAATCAACGACAATATACAGATCGGTCAATCGTCAAATTACAGAGTATG
AAGATTTCAACGGAAAACAATGCAAAGTTGGATATGGGATGGTTTTCTCC
GTTGCCAGAAATGGACGTCTTTGCATCCAAAAAATGTTACTATCGGAACT
CTTCAGTATTCAGTTCACCAAGTGTTCAAAGTTGATAGCATTGTTGGTGC
TCTCGTTTGGAACGTGACAAGTGCTGCAGCAGGTGATCAGATGAAGCTTC
TATATAAGGGCGAAAAATGCTACAATGCAACAGTCACTCATAAAGACTTC
CACTTTATCAAAGGAATCGGGCAAACTCTTGCCAAAGTTTCTTTTAGTAA
AAGAGCTCTTTTTAAAATTGATCTTCAAAATGGAAGCGGACCGGTGAGCC
TTTTTATCTTGAACACAACGTATGACGATGGTGGAGTTTATCAGCTGTAT
TCAAAACACGGTCCCCTCGTCTTCAAAATCAACGACAATATACAGATCGG
TCAATCGTCAAATTACAGAGTATGAAGATTTCAACGGAAAACAATGCAAA
GTTGGATATGGGATGGTTTTCTCCGTTGCCAGAAATGGACGTCTTTGCAT
CCAAAAAATGTTACTATCGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002959XLOC_002959Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005208-proteinTCONS_00005208-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005208-exon-sc0000051-1575043694:437547..437568TCONS_00005208-exon-sc0000051-1575043694:437547..437568Clytia hemisphaericaexon
TCONS_00005208-exon-sc0000051-1575043694:437140..437258TCONS_00005208-exon-sc0000051-1575043694:437140..437258Clytia hemisphaericaexon
TCONS_00005208-exon-sc0000051-1575043694:434312..434646TCONS_00005208-exon-sc0000051-1575043694:434312..434646Clytia hemisphaericaexon
TCONS_00005208-exon-sc0000051-1510915933:437547..437568TCONS_00005208-exon-sc0000051-1510915933:437547..437568Clytia hemisphaericaexon
TCONS_00005208-exon-sc0000051-1510915933:437140..437258TCONS_00005208-exon-sc0000051-1510915933:437140..437258Clytia hemisphaericaexon
TCONS_00005208-exon-sc0000051-1510915933:434312..434646TCONS_00005208-exon-sc0000051-1510915933:434312..434646Clytia hemisphaericaexon
TCONS_00005208-exon-sc0000051-1491911889:437547..437568TCONS_00005208-exon-sc0000051-1491911889:437547..437568Clytia hemisphaericaexon
TCONS_00005208-exon-sc0000051-1491911889:437140..437258TCONS_00005208-exon-sc0000051-1491911889:437140..437258Clytia hemisphaericaexon
TCONS_00005208-exon-sc0000051-1491911889:434312..434646TCONS_00005208-exon-sc0000051-1491911889:434312..434646Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:434312..437568 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.129574	0	0	0.17919	0	0	0	0	0.138695	0	0	1.32557	2.20259	0	0	0.498745	1.32911	23.8712	9.75529	0	0	0	0	1.42662	0.254646	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005208 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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