TCONS_00005380 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005380
Unique NameTCONS_00005380
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2109

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005380 ID=TCONS_00005380|Name=TCONS_00005380|organism=Clytia hemisphaerica|type=transcript|length=2109bp
GGAAATTTCACAGAATGTGCATAATTAATTGAAAATTGTGGCTTAATTTC
TCCAATGTTTAGGGGCTGTGATACAAGGGTATTCTTAGGTTGagttttct
taatatttttataccattcaattaaatatctttcactccaaacaaaaata
atgaaataaaaatataaatagtttattaaaaaaatatagatTAGTAAATA
ATAAGTAAAATAATATTTAGTGATTGCTTCATATCATCTACTCGAGTACA
CGTTTTCCTCAGCAAAGGTAAATGTCTCAATGCGTAAGGGAAATAAAATA
TCTACAAGCTACGTAAAATTCATGTCATAGAGCCTTTGTTATAAAGCTTT
GCTAGGGGACTAGTAAACTTGTTGAGGTTGCACAAGTTCGAAGAATTGTT
CGAGTTATATAAAGAATTGTTTTTCGATTCTTAAAACATTCGGATTGTAC
ATGTCGATGAAACacgatttttcataagaacaatctttataaaaacataa
ggtttcgatggtcGGAAAACGATCAAAGTCATgacatttgagaaaaaagg
gaaattcccacgaaattttacaaccacaaacgatttggaagcgctctaaa
ttaggttggacgggTAGAATTTTAACTCTAAGTGtaaacgctagacttaa
gactaaggatccaaaagttcaagaatggtccaatagggctcagaatatag
cctggaagtctataaacccctcccgaattgaaatattcaaataaatttat
caatttgcccaaaagcgactttttcgcccgaactttaaattgctgaaaac
gaggaattaaccaaaattttgaccaagattgtactgagaacattttaagg
ctacCCTTTCTATTTCTTTGGGAATTGctctaaaaatgttgaaaataaaa
acaagttcaattttaggcttaaaacttaaaaagttaaaaatatccaaaaa
tattggacgttcttataaaaaacatctaCAAATTGACATTATAAATTGTC
ACACATAGCGGTTGTATCAGTTACAAAGGTCACTCTTGGAGACATGTTAT
TATTCAAATGCTCACATTCTGCACTGTTAGCAGATCCTTTTGTTTTCATG
ACAAAACGATCATATAATGTTTTCACACTTTTCCATCTTCTGTCCCTCAA
TAAGGACAACTCACGTCGGAAATCGCGACGGTAATAGGCGTACATCAAGG
GGTCCAGACACGGGTTTAACAATAAGATAAAATAAGCAGTGTTCATCCAA
GCAGCCTCTGGATAAACTTTCTGATCAACAATTATGAGTTCAGTTATACA
AGTCGGTATCCAGCACAAGAAAAAACTAATGGCCACCATAACGCAGACTT
TGATTCCCTTTTTATTCGACGGTGGCCCTTTAACGCCTTTCATTTTAGAC
TGTATAGTACGAATGATGGCAAAATAAGCTGCTCCAATTAATAATCCCAA
GATTAGAACCATAGAGAATAGAGTTATACCGTAATAGAGATTAATCTTAG
CTCTAGCCATTGGATCAATATTCGGGTTAATTTGCCAAGCGAACGGCATG
CATACGCAAAAAAAGGTCCACATCCATGCTACAAATATGAACAATCTGGC
GCGTGATTTTGTAAAGTATTTTGGATACTCAAAGGGGCGCATTATCGATA
CAAATCGATCCAACGCTATGAGTACCAAATTAAAAGTCGATGCTAACATA
TTGAAACTTAATACTGAACCGCAGAATAAGGAACATTGTCCAACTCCGGC
TGATGGTCCTTTCGCCATTATCCTTAATAGAGCACAATATTCACACGGCG
CTATTGTCAATCCTACCAATAAATCACTGATGCTTAAAGACATGACAAAA
TAGTTCTGTTGGGTTCTTAATGGGCGGTTATTGGCAAATAACCATATCAA
CATTGCGTTTGCCATTATGATTAATAGAGATTCCATGCCAagaaaaatcc
agaaaattaaCGGGTATTGAATCGGGTTATCGTTGTTCAATCCGTTTTCC
CCGATTTCATGATGGGTTTTATTGAGATAAATGGTAGCCAGTGTTGTTGA
TATATTGAAAGATTcattcattttctattttctttgttctttgtacttgt
tttttttat
Run BLAST on NCBI

protein sequence of TCONS_00005380-protein

>TCONS_00005380-protein ID=TCONS_00005380-protein|Name=TCONS_00005380-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
MNESFNISTTLATIYLNKTHHEIGENGLNNDNPIQYPLIFWIFLGMESLL
IIMANAMLIWLFANNRPLRTQQNYFVMSLSISDLLVGLTIAPCEYCALLR
IMAKGPSAGVGQCSLFCGSVLSFNMLASTFNLVLIALDRFVSIMRPFEYP
KYFTKSRARLFIFVAWMWTFFCVCMPFAWQINPNIDPMARAKINLYYGIT
LFSMVLILGLLIGAAYFAIIRTIQSKMKGVKGPPSNKKGIKVCVMVAISF
FLCWIPTCITELIIVDQKVYPEAAWMNTAYFILLLNPCLDPLMYAYYRRD
FRRELSLLRDRRWKSVKTLYDRFVMKTKGSANSAECEHLNNNMSPRVTFV
TDTTAMCDNL
Run BLAST on NCBI

transcript from alignment at sc0000052:43800..45908

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005380 ID=TCONS_00005380|Name=TCONS_00005380|organism=Clytia hemisphaerica|type=transcript|length=2109bp|location=Sequence derived from alignment at sc0000052:43800..45908 (Clytia hemisphaerica)
ataaaaaaaacaagtacaaagaacaaagaaaatagaaaatgaatgAATCT
TTCAATATATCAACAACACTGGCTACCATTTATCTCAATAAAACCCATCA
TGAAATCGGGGAAAACGGATTGAACAACGATAACCCGATTCAATACCCGt
taattttctggatttttctTGGCATGGAATCTCTATTAATCATAATGGCA
AACGCAATGTTGATATGGTTATTTGCCAATAACCGCCCATTAAGAACCCA
ACAGAACTATTTTGTCATGTCTTTAAGCATCAGTGATTTATTGGTAGGAT
TGACAATAGCGCCGTGTGAATATTGTGCTCTATTAAGGATAATGGCGAAA
GGACCATCAGCCGGAGTTGGACAATGTTCCTTATTCTGCGGTTCAGTATT
AAGTTTCAATATGTTAGCATCGACTTTTAATTTGGTACTCATAGCGTTGG
ATCGATTTGTATCGATAATGCGCCCCTTTGAGTATCCAAAATACTTTACA
AAATCACGCGCCAGATTGTTCATATTTGTAGCATGGATGTGGACCTTTTT
TTGCGTATGCATGCCGTTCGCTTGGCAAATTAACCCGAATATTGATCCAA
TGGCTAGAGCTAAGATTAATCTCTATTACGGTATAACTCTATTCTCTATG
GTTCTAATCTTGGGATTATTAATTGGAGCAGCTTATTTTGCCATCATTCG
TACTATACAGTCTAAAATGAAAGGCGTTAAAGGGCCACCGTCGAATAAAA
AGGGAATCAAAGTCTGCGTTATGGTGGCCATTAGTTTTTTCTTGTGCTGG
ATACCGACTTGTATAACTGAACTCATAATTGTTGATCAGAAAGTTTATCC
AGAGGCTGCTTGGATGAACACTGCTTATTTTATCTTATTGTTAAACCCGT
GTCTGGACCCCTTGATGTACGCCTATTACCGTCGCGATTTCCGACGTGAG
TTGTCCTTATTGAGGGACAGAAGATGGAAAAGTGTGAAAACATTATATGA
TCGTTTTGTCATGAAAACAAAAGGATCTGCTAACAGTGCAGAATGTGAGC
ATTTGAATAATAACATGTCTCCAAGAGTGACCTTTGTAACTGATACAACC
GCTATGTGTGACAATTTATAATGTCAATTTGtagatgttttttataagaa
cgtccaatatttttggatatttttaactttttaagttttaagcctaaaat
tgaacttgtttttattttcaacatttttagagCAATTCCCAAAGAAATAG
AAAGGgtagccttaaaatgttctcagtacaatcttggtcaaaattttggt
taattcctcgttttcagcaatttaaagttcgggcgaaaaagtcgcttttg
ggcaaattgataaatttatttgaatatttcaattcgggaggggtttatag
acttccaggctatattctgagccctattggaccattcttgaacttttgga
tccttagtcttaagtctagcgtttaCACTTAGAGTTAAAATTCTAcccgt
ccaacctaatttagagcgcttccaaatcgtttgtggttgtaaaatttcgt
gggaatttcccttttttctcaaatgtcATGACTTTGATCGTTTTCCgacc
atcgaaaccttatgtttttataaagattgttcttatgaaaaatcgtGTTT
CATCGACATGTACAATCCGAATGTTTTAAGAATCGAAAAACAATTCTTTA
TATAACTCGAACAATTCTTCGAACTTGTGCAACCTCAACAAGTTTACTAG
TCCCCTAGCAAAGCTTTATAACAAAGGCTCTATGACATGAATTTTACGTA
GCTTGTAGATATTTTATTTCCCTTACGCATTGAGACATTTACCTTTGCTG
AGGAAAACGTGTACTCGAGTAGATGATATGAAGCAATCACTAAATATTAT
TTTACTTATTATTTACTAatctatatttttttaataaactatttatattt
ttatttcattatttttgtttggagtgaaagatatttaattgaatggtata
aaaatattaagaaaactCAACCTAAGAATACCCTTGTATCACAGCCCCTA
AACATTGGAGAAATTAAGCCACAATTTTCAATTAATTATGCACATTCTGT
GAAATTTCC

Coding sequence (CDS) from alignment at sc0000052:43800..45908

>TCONS_00005380 ID=TCONS_00005380|Name=TCONS_00005380|organism=Clytia hemisphaerica|type=CDS|length=1083bp|location=Sequence derived from alignment at sc0000052:43800..45908 (Clytia hemisphaerica)
atgaatgAATCTTTCAATATATCAACAACACTGGCTACCATTTATCTCAA
TAAAACCCATCATGAAATCGGGGAAAACGGATTGAACAACGATAACCCGA
TTCAATACCCGttaattttctggatttttctTGGCATGGAATCTCTATTA
ATCATAATGGCAAACGCAATGTTGATATGGTTATTTGCCAATAACCGCCC
ATTAAGAACCCAACAGAACTATTTTGTCATGTCTTTAAGCATCAGTGATT
TATTGGTAGGATTGACAATAGCGCCGTGTGAATATTGTGCTCTATTAAGG
ATAATGGCGAAAGGACCATCAGCCGGAGTTGGACAATGTTCCTTATTCTG
CGGTTCAGTATTAAGTTTCAATATGTTAGCATCGACTTTTAATTTGGTAC
TCATAGCGTTGGATCGATTTGTATCGATAATGCGCCCCTTTGAGTATCCA
AAATACTTTACAAAATCACGCGCCAGATTGTTCATATTTGTAGCATGGAT
GTGGACCTTTTTTTGCGTATGCATGCCGTTCGCTTGGCAAATTAACCCGA
ATATTGATCCAATGGCTAGAGCTAAGATTAATCTCTATTACGGTATAACT
CTATTCTCTATGGTTCTAATCTTGGGATTATTAATTGGAGCAGCTTATTT
TGCCATCATTCGTACTATACAGTCTAAAATGAAAGGCGTTAAAGGGCCAC
CGTCGAATAAAAAGGGAATCAAAGTCTGCGTTATGGTGGCCATTAGTTTT
TTCTTGTGCTGGATACCGACTTGTATAACTGAACTCATAATTGTTGATCA
GAAAGTTTATCCAGAGGCTGCTTGGATGAACACTGCTTATTTTATCTTAT
TGTTAAACCCGTGTCTGGACCCCTTGATGTACGCCTATTACCGTCGCGAT
TTCCGACGTGAGTTGTCCTTATTGAGGGACAGAAGATGGAAAAGTGTGAA
AACATTATATGATCGTTTTGTCATGAAAACAAAAGGATCTGCTAACAGTG
CAGAATGTGAGCATTTGAATAATAACATGTCTCCAAGAGTGACCTTTGTA
ACTGATACAACCGCTATGTGTGACAATTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003054XLOC_003054Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005380-proteinTCONS_00005380-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005380-exon-sc0000052-1491911889:43800..45908TCONS_00005380-exon-sc0000052-1491911889:43800..45908Clytia hemisphaericaexon
TCONS_00005380-exon-sc0000052-1510915933:43800..45908TCONS_00005380-exon-sc0000052-1510915933:43800..45908Clytia hemisphaericaexon
TCONS_00005380-exon-sc0000052-1575043694:43800..45908TCONS_00005380-exon-sc0000052-1575043694:43800..45908Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:43800..45908 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.312429	0.292176	0.677111	0.716825	22.4893	16.4418	21.0427	24.114	16.36	39.6245	12.7637	17.1096	1.12944	0.948021	0.504876	0.515038	1.90795	0.939621	1.13811	1.91454	3.07683	3.46194	0.670651	0.990757	0.885789	1.53504	1.28966	1.18342	0.684289	0.528664
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
[Close]
BLAST of TCONS_00005380 vs. Swiss-Prot (Human)
Match: MTR1L (Melatonin-related receptor OS=Homo sapiens GN=GPR50 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 8.825e-16
Identity = 80/294 (27.21%), Postives = 135/294 (45.92%), Query Frame = -3 
Query: 1160 QYP--LIFWIFLGMESLLII--MANAMLIWLFANNRPLRTQQNYFVMSLSISDLLVGLTIAPCEYCALLRIMAKGPSAGVGQCSLFC---GSVLSFNMLASTFNLVLIALDRFVSIMRPFEYPKYFTKSRARLFIFVAWMWTFFCVCMPFAWQINPNIDPMARAKI-----NLYYGITLFSMVLILGLLI-GAAYFAIIRTIQSKMKGVKGPPSNK----KGIKVCVMVAISFFLCWIP-TCITELIIVDQKVYPEAA-----WMN-TAYFILLLNPCLDPLMYAYYRRDFRRE 1969
            +YP  LI ++F  M   +++  + N+M+I     N+ LR   N FV+SLS++D+LV +      Y  +L  M+ G   G     L C   G +   +++ S FN+V IA++R+  I    +Y + F+     +++ + W+ T   V +P  +      DP     I     N  + +T+  +  +L LLI G  Y  I   + +        P N+    +      ++ + F +CW P   +T L+ V  K   E A     W+   AYFI   N CL+ ++Y     +FRRE
Sbjct:   22 EYPPALIIFMFCAMVITIVVDLIGNSMVILAVTKNKKLRNSGNIFVVSLSVADMLVAIY----PYPLMLHAMSIG---GWDLSQLQCQMVGFITGLSVVGSIFNIVAIAINRYCYICHSLQYERIFSVRNTCIYLVITWIMTVLAV-LPNMYIGTIEYDPRTYTCIFNYLNNPVFTVTIVCIHFVLPLLIVGFCYVRIWTKVLAARDPAGQNPDNQLAEVRNFLTMFVIFLLFAVCWCPINVLTVLVAVSPK---EMAGKIPNWLYLAAYFIAYFNSCLNAVIYGLLNENFRRE 304
The following BLAST results are available for this feature:
BLAST of TCONS_00005380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MTR1L8.825e-1627.21Melatonin-related receptor OS=Homo sapiens GN=GPR5... [more]
back to top