TCONS_00005457 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005457
Unique NameTCONS_00005457
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length661

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005457 ID=TCONS_00005457|Name=TCONS_00005457|organism=Clytia hemisphaerica|type=transcript|length=661bp
CTAAGTGCTATTATTTGAAACCACAAATGACTATTTCTCATCTATTTCAA
GGGTAGACAATGAGATAATTTTACGGTTCCGATTTCCAATATAAGAGGCT
GGGAGCAAACGTTCATTCCAATGCGCGTGTAGTtatcatttctttttaaa
atttggctTGATTCAGTGTAGGCAATCATGccaCCAAAGAAGGACGCCGG
AAAAGGACAGACAAAATCCCAAAAGCCAAAACCATCTGGCGGGGGCAAGG
CTAAAAAGAAGAAGTGGTCCAAAGGAAAGACCCGTGACAAGTTGAACAAT
GCCATCTTATTCGACAAAGCAACTTATGAGAAATTGTACAAAGAAGTCCC
AAGCTACAAATTAATTACTCCATCAGTTGTCTCTGAACGATTGAAGATTC
GTGGATCCTTAGCTCGTCAAGCTTTGAAAGAATTACTCGGTAAAGGACTT
ATTAAAGAAGTCGACGATCATCGCGCACAGAAAATCTACACGAGGGCAAC
CAAGGAATAATTTTATGAGAAGAAATATTTTCCCATAAATTCATGTGTTC
ATTGTTTTTGtgccattttgataatttcCCTTTGTTgctgtttttatcag
atttcgaaaattgaagaagtcgctacagtatatggcccgaAACGTCTACC
CAAATTAAAAT
Run BLAST on NCBI

protein sequence of TCONS_00005457-protein

>TCONS_00005457-protein ID=TCONS_00005457-protein|Name=TCONS_00005457-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MPPKKDAGKGQTKSQKPKPSGGGKAKKKKWSKGKTRDKLNNAILFDKATY
EKLYKEVPSYKLITPSVVSERLKIRGSLARQALKELLGKGLIKEVDDHRA
QKIYTRATKE
Run BLAST on NCBI

transcript from alignment at sc0000053:72100..77196-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005457 ID=TCONS_00005457|Name=TCONS_00005457|organism=Clytia hemisphaerica|type=transcript|length=5097bp|location=Sequence derived from alignment at sc0000053:72100..77196- (Clytia hemisphaerica)
CTAAGTGCTATTATTTGAAACCACAAATGACTATTTCTCATCTATTTCAA
GGGTAGACAATGAGATAATTTTACGGTTCCGATTTCCAATATAAGAGGCT
GGGAGCAAACGTTCATTCCAATGCGCGTGTAGTTATCATTTCTTTTTAAA
ATTTGGCTTGATTCAGTGTAGGCAATCATGGTAAGTAAAATTTGAAATCT
TTTCTCTACTAACTTATTCCCTTATTACTTACCCACGAAATACTAAGCCC
TCCTGCTTGTTTGTGTCCACCTTATTTTCTTATCAGATCTTTTTTTCGTG
AAAGTTCATGGCTGCACAAAAGGGACAATACATCTGAACATCTAATTATT
ATACTTGAAGAAGGACTTGTTTCTGTTTTGTGTTCTAGGGTATCGTAGTC
TTGAAAAAAAAAGTTATTGATATATGAAATTGTCACTTGAACTTGGAACC
ATAAATTGGTTAATATAACCCTCGAAACAAAGTATTTTTGATGTATAAGA
AAAAAAAGTAACAGAACCAGTAGACAGGACGACCCTGGACCCCGCCGTAC
ATTGCGCGGTGGAGTCCGGTGGGTGTACGGTGGGCGGAGCCTAACCTATT
TTTACCACCGTACATGTCCCACCGTACACGAAAAATACCATAGGAAGTCA
ATCAGGTTTCTGAATTCCCAGCGGACGCAGACAATCGGTGGCAATTCCGT
GAACGGTGGCAATTCCGTGTACGGTGGGATTCTTACGGTGGTGTTGTACG
GTGTTTTCGATCTAACCTAAAATACCACCGTACACCCACCGGATGCCCAC
CGGACTCCACCGCGCAATGTACGGCAGTGTCCAGGGTCGTTAGACAGGCA
GCTGATGACATCAAAAAAAGTGAATCAGTGAAAATTCAAGGGACAAATAT
TGAGTACTTATTTAGAAATCTTTAAAATTATAGAGAGTCAGAAAAATTTA
CTCGGCGTGTTTAAAAATCTTTATCGGACATGTCCGAGAATAATTTATTA
ATTGATGACGTCACAAGCAAAAGTGAAAGATATGAAAAGTTATTGAGGTC
CCTAGCTCTTCTATGNTGATGTAGATTTCAAATCACATCAATTTTAATAA
GTAAAAATTTGAATATGAAAGTTATGAAGGTCTGTAGCTCTTCTATGTAT
GACGTCATTTTTGAAAAAATGCCTCATTTTATAAGGAATTACGATCTCAA
TTTTCTCGAGTTAGGCTGAGAAATCGAATATACCCGTTTAAATTGTTTTT
ATATAGAGAGACTGATGTGATTTAGAATCTAGAGATCGAAAAATGCGTCG
AATGGTATCATTATTATATGCTGAAACCAAATTTTCACTTTTGGTGGTGA
CATCATCATTTGACAAATTACTACCAGACATGTCCGTTAAATAAATTTTC
GGACGTCAAGTAAAATTTTTAGGATCAGTAGATATATGGGAACAAGAAAA
ATCAACTCGACATTTGTCTCAAAGTCGTCCAGATTTTAGATGTCGTCAGC
TGCCTGTCTACAGTCAAACTAAACTTCAGGGATGGAACAGAACTGTAACG
TCTGAACATGGGTTAAATTATGCATTTAGAGAAATAGTCTAGAGTCCATA
AGGGTGCACATTTCTTCACTCAAAGATATAAGCACATGGCATGGGGAGGT
GAAATTGTAATCAAAATTTTACTTTCCAGCTCAAAATGAAATATTTTTCT
TTAATATATATTTAGAGTTGGTATTAAGGCACAAACTAAACATTTAATTA
GGGTTAGCCTCAGAGATTAAATTTTGAGAGGAGTAAACAAAACACTTTTC
AATCAGATAATTTAGGGAGAAAGCAACTGTCTATTGAATAACAAAATTAC
TCTAGTATTATGAACAGAGGGGGTTTATCTAAAGAATCCTGCATTACTAA
AAATAGACAAAAAGAACGACAAATTTAATAAAAACGACATATTACGCCGC
CCACAACCCCGACCGAAAGTGACTGTACCACCCCTAGCGATTCATTCCGA
TTCGTTTATCACGGGAATTAACTACATGTGGTCTAAAAGAATGACAAATT
ACGCATGCATGTTACAATGCAGGATCCTTTAGAGGAACAGACTGACAAGA
TAAACATATTTCAGAAAGCAAATAACCAGGCGGTGTCAACCGAACCCTAC
CGAACCCGATTTTCCTTTACGAAAATTTCTTGATGAGTTCGATGAGTGTT
CTTTGTTTCGATGATGTTCGATGAGTTGATTTAAGTTCGATGTGGTGCGA
TGATTGTGTCGGATTGATTCTACTTTTCTGTACCTTTCAGAAAATTACGA
GGTTGTTTAATCAAAACACAGGCACCGTATGCATCACTCATTATTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAAATAACGATTT
CTAACTCAAACTGGGCATTACAGGAGGGCTTCGCCCTCCTATATAGCCCA
TGTCGTATATATACGACATCGGCACTTAAAGGGTTAAAATGCCAAAAAAC
GAAAATATTTTGAAATTGCCCTAAACACGATAAAGATACGAGTGGGGGTA
ATAAATGAGGTGTAGATTTATTCAAGAGTTAGATTCACCTTAGAAGTAAT
TTTGTTATCACTTTCAAAAAATTGTGCTAATCTTTTTGTCTTTGACCTTG
TACTGTAATGAAAACATTCTCATTTGTGACAATTTTTTTGCATTTCAGCC
ACCAAAGAAGGACGCCGGAAAAGGACAGACAAAATCCCAAAAGCCAAAAC
CATCTGGCGGGGGCAAGGCTAAAAAGAAGGTAAATCCTACTTATATTACT
GAAACTTTCCATTTTTCATTACCACTTTGTATAGTGTTTGAAACTTCTGT
TGGTAAAACGTGAAAGTTTGGTCTGCATGAAAGAAATATTTGCATTGCTC
CTTAATGACTTGATTTTCCAATGTTTGAAAAGTGATTTTCCCCTTGATGA
ATTGATTTATTGTACTCATTATGCTTTGTTTTTCTTAATATTTGTAGAAG
TGGTCCAAAGGAAAGACCCGTGACAAGTTGAACAATGCCATCTTATTCGA
CAAAGCAACTTATGAGAAATTGTACAAAGAAGTCCCAAGCTACAAATTAA
TTACTCCATCAGTTGTCTCTGAACGATTGAAGATTCGTGGATCCTTAGCT
CGTCAAGCTTTGAAAGAATTACTCGGTAAAGGACTTATTAAAGAAGTCGA
CGATCATCGCGCACAGAAAATCTACACGAGGGCAACCAAGGAATAATTTT
ATGAGAAGAAATATTTTCCCATAAATTCATGTGTTCATTGTTTTTGTGCC
ATTTTGATAATTTCCCTTTGTTGCTGTTTTTATCAGATTTCGAAAATTGA
AGAAGTCGCTACAGTATATGGCCCGAAACGTCTACCCAAATTAAAAT

Coding sequence (CDS) from alignment at sc0000053:72100..77196-

>TCONS_00005457 ID=TCONS_00005457|Name=TCONS_00005457|organism=Clytia hemisphaerica|type=CDS|length=999bp|location=Sequence derived from alignment at sc0000053:72100..77196- (Clytia hemisphaerica)
AAGTGGTCCAAAGGAAAGACCCGTGACAAGTTGAACAATGCCATCTTATT
CGACAAAGCAACTTATGAGAAATTGTACAAAGAAGTCCCAAGCTACAAAT
TAATTACTCCATCAGTTGTCTCTGAACGATTGAAGATTCGTGGATCCTTA
GCTCGTCAAGCTTTGAAAGAATTACTCGGTAAAGGACTTATTAAAGAAGT
CGACGATCATCGCGCACAGAAAATCTACACGAGGGCAACCAAGGAATAAC
CACCAAAGAAGGACGCCGGAAAAGGACAGACAAAATCCCAAAAGCCAAAA
CCATCTGGCGGGGGCAAGGCTAAAAAGAAGATGAAGTGGTCCAAAGGAAA
GACCCGTGACAAGTTGAACAATGCCATCTTATTCGACAAAGCAACTTATG
AGAAATTGTACAAAGAAGTCCCAAGCTACAAATTAATTACTCCATCAGTT
GTCTCTGAACGATTGAAGATTCGTGGATCCTTAGCTCGTCAAGCTTTGAA
AGAATTACTCGGTAAAGGACTTATTAAAGAAGTCGACGATCATCGCGCAC
AGAAAATCTACACGAGGGCAACCAAGGAATAACCACCAAAGAAGGACGCC
GGAAAAGGACAGACAAAATCCCAAAAGCCAAAACCATCTGGCGGGGGCAA
GGCTAAAAAGAAGATGAAGTGGTCCAAAGGAAAGACCCGTGACAAGTTGA
ACAATGCCATCTTATTCGACAAAGCAACTTATGAGAAATTGTACAAAGAA
GTCCCAAGCTACAAATTAATTACTCCATCAGTTGTCTCTGAACGATTGAA
GATTCGTGGATCCTTAGCTCGTCAAGCTTTGAAAGAATTACTCGGTAAAG
GACTTATTAAAGAAGTCGACGATCATCGCGCACAGAAAATCTACACGAGG
GCAACCAAGGAATAACCACCAAAGAAGGACGCCGGAAAAGGACAGACAAA
ATCCCAAAAGCCAAAACCATCTGGCGGGGGCAAGGCTAAAAAGAAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003105XLOC_003105Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005457-proteinTCONS_00005457-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005457-exon-sc0000053-1575043694:77017..77196TCONS_00005457-exon-sc0000053-1575043694:77017..77196Clytia hemisphaericaexon
TCONS_00005457-exon-sc0000053-1575043694:72718..72798TCONS_00005457-exon-sc0000053-1575043694:72718..72798Clytia hemisphaericaexon
TCONS_00005457-exon-sc0000053-1575043694:72100..72499TCONS_00005457-exon-sc0000053-1575043694:72100..72499Clytia hemisphaericaexon
TCONS_00005457-exon-sc0000053-1510915933:77017..77196TCONS_00005457-exon-sc0000053-1510915933:77017..77196Clytia hemisphaericaexon
TCONS_00005457-exon-sc0000053-1510915933:72718..72798TCONS_00005457-exon-sc0000053-1510915933:72718..72798Clytia hemisphaericaexon
TCONS_00005457-exon-sc0000053-1510915933:72100..72499TCONS_00005457-exon-sc0000053-1510915933:72100..72499Clytia hemisphaericaexon
TCONS_00005457-exon-sc0000053-1491911889:77017..77196TCONS_00005457-exon-sc0000053-1491911889:77017..77196Clytia hemisphaericaexon
TCONS_00005457-exon-sc0000053-1491911889:72718..72798TCONS_00005457-exon-sc0000053-1491911889:72718..72798Clytia hemisphaericaexon
TCONS_00005457-exon-sc0000053-1491911889:72100..72499TCONS_00005457-exon-sc0000053-1491911889:72100..72499Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:72100..77196 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3152.1	3113.52	3564.97	4011.19	2187.79	1773.66	2110.17	2303.71	2787.84	2413.6	2609.89	3280.47	3570.54	3587.2	3417.73	3415.97	3422.16	3707.03	1796.49	2106.12	4251.39	3977.19	3856.95	3526.08	2884.96	2904.18	4009.83	3820.75	2788.92	2886.03
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004977Ribosomal_S25
IPR011991WHTH_DNA-bd_dom
Blast
[Close]
BLAST of TCONS_00005457 vs. Swiss-Prot (Human)
Match: RS25 (40S ribosomal protein S25 OS=Homo sapiens GN=RPS25 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.360e-26
Identity = 60/75 (80.00%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:  280 TRDKLNNAILFDKATYEKLYKEVPSYKLITPSVVSERLKIRGSLARQAXXXXXXXXXXXXVDDHRAQKIYTRATK 504
             RDKLNN +LFDKATY+KL KEVP+YKLITP+VVSERLKIRGSLAR AL+ELL KGLIK V  HRAQ IYTR TK
Sbjct:   40 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 114
The following BLAST results are available for this feature:
BLAST of TCONS_00005457 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS255.360e-2680.0040S ribosomal protein S25 OS=Homo sapiens GN=RPS25... [more]
back to top