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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005470 ID=TCONS_00005470|Name=TCONS_00005470|organism=Clytia hemisphaerica|type=transcript|length=2798bpRun BLAST on NCBI transcript from alignment at sc0000053:154625..178831- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005470 ID=TCONS_00005470|Name=TCONS_00005470|organism=Clytia hemisphaerica|type=transcript|length=24207bp|location=Sequence derived from alignment at sc0000053:154625..178831- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00005470 vs. Swiss-Prot (Human)
Match: ATP7A (Copper-transporting ATPase 1 OS=Homo sapiens GN=ATP7A PE=1 SV=3) HSP 1 Score: 210.69 bits (535), Expect = 7.348e-56 Identity = 153/515 (29.71%), Postives = 264/515 (51.26%), Query Frame = 3
Query: 819 VLLAETNQSVDIKDVAMGTLIVVCAGEQIPLDGKVIKGKAAVDESSITGEATPVGKSTDSTVFSGTVIQSGYLKIETTSDYKTSTLSRVSEYIEEAKAASSNTEEILNRFAKFYTPLIVGVALLIFIVPLIIGKVKNNFTDKDMKDWS--------------ERALKVLVVACPCSLIIAVPVTMISGISRASKDGILVKGAQFLEKMASIQMFCFDKTGTLTEG-----RFQVVAE-HHVSGDRSDAVMYAAALETKSSHPVAAAIVNH------------------FSGC-ITDKIEQFGSQI-----NLPD---------VIKFKNEAGM---------GLSGVVNEKE--VLVGNLDLMVLYNVEVSLKEKEYLDEWSVTGKTVVFVAIDSKLSLILGLADKVRDSSRATIQGLTQHNVRCCMLTGDTEGPARLISDDTGIDEYVFSMKPHEKYEWLALKQKQNKLKVAMCGDGVNDCPSLAAADVGIAIGPTATGLAVDSAGITLMSDDL 2171
+LL+E + VD++ V G +I V G + P+DG+VI+G + VDES ITGEA PV K STV +G++ Q+G L I T +TLS++ + +EEA+ + + ++ ++ + ++ P IV V++ +V ++IG + + ++ + ++ VL +ACPCSL +A P ++ G +++GIL+KG + LE +++ FDKTGT+T G + +V+ E + +S + A++ A E+ S HP+ AI + GC I+ K+ + N+ D I NE +S +N ++ VL+GN + M+ + ++ +++ E G+T V VA+D +L ++ +AD V+ + I L + ++TGD AR I+ GI + + P K + Q++ K +VAM GDG+ND P+LA A+VGIAIG T T +A+++A + L+ +DL
Sbjct: 830 ILLSE--EQVDVELVQRGDIIKVVPGGKFPVDGRVIEGHSMVDESLITGEAMPVAKKPGSTVIAGSINQNGSLLICATHVGADTTLSQIVKLVEEAQTSKAPIQQFADKLSGYFVPFIVFVSIATLLVWIVIGFLNFEIVETYFPGYNRSISRTETIIRFAFQASITVLCIACPCSLGLATPTAVMVGTGVGAQNGILIKGGEPLEMAHKVKVVVFDKTGTITHGTPVVNQVKVLTESNRISHHKILAIVGTA--ESNSEHPLGTAITKYCKQELDTETLGTCIDFQVVPGCGISCKVTNIEGLLHKNNWNIEDNNIKNASLVQIDASNEQSSTSSSMIIDAQISNALNAQQYKVLIGNREWMIRNGLVINNDVNDFMTEHERKGRTAVLVAVDDELCGLIAIADTVKPEAELAIHILKSMGLEVVLMTGDNSKTARSIASQVGITKVFAEVLPSHKVAKVKQLQEEGK-RVAMVGDGINDSPALAMANVGIAIG-TGTDVAIEAADVVLIRNDL 1338 The following BLAST results are available for this feature:
BLAST of TCONS_00005470 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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