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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005478 ID=TCONS_00005478|Name=TCONS_00005478|organism=Clytia hemisphaerica|type=transcript|length=5360bpRun BLAST on NCBI protein sequence of TCONS_00005478-protein >TCONS_00005478-protein ID=TCONS_00005478-protein|Name=TCONS_00005478-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1491bp MTQVLSPQSIDHVHLRLKKHAVKEQADATTITKKGTMEASTTFNPRAGGVRun BLAST on NCBI transcript from alignment at sc0000053:214918..261181- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005478 ID=TCONS_00005478|Name=TCONS_00005478|organism=Clytia hemisphaerica|type=transcript|length=46264bp|location=Sequence derived from alignment at sc0000053:214918..261181- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000053:214918..261181- >TCONS_00005478 ID=TCONS_00005478|Name=TCONS_00005478|organism=Clytia hemisphaerica|type=CDS|length=71616bp|location=Sequence derived from alignment at sc0000053:214918..261181- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005478 vs. Swiss-Prot (Human)
Match: RHG32 (Rho GTPase-activating protein 32 OS=Homo sapiens GN=ARHGAP32 PE=1 SV=1) HSP 1 Score: 499.204 bits (1284), Expect = 2.043e-145 Identity = 249/520 (47.88%), Postives = 339/520 (65.19%), Query Frame = 2
Query: 497 ARFPKIEEMSHFHYAQVDFADKPVKIALSPVEKDEINSFDPTQALT--VEVSSKDKSWVVKRSQEDFVGLDRQIHRCLYDRRYSKLPELKDLDEAGRLDENMVQQMQFYLSRFSELAGNNINCGPILNWLELDNHGNHLVVMEADDSAINVPAVAAGRVIKRYQAQAPDEMSLEVGDFLSVIDMPSSDETIWWRGKKGFEVGFFPSHCIEILNEREINDQILHHLQSRPVSKRRGKFISFLRFFFKSRPSKDELMQHGILRERVFGCDLGERLALTGRDTPLVLDLCAEVIEEHGIVDGIYRLSGIVSNLQKLRLSFDCDEQPPNLRDLKYLNDVHCISSLLKTYFRELPNPLFTHELYDKFVIAIKKADDADRTVAFHHVIQRLPPPHYRTMNKLLRHLNYCASKSDTTNMTAKNLAIVWAPNLLKPNSDDSV-----AALTEFRTQAIIVEYMIRNVDVFFDKNLASAAIAYYPEMKEXXXXXXXXXXXXECIKLGLQNNSGPKLISLEEARQRIHKQ 2035
FPK+ E +HFHY V+F ++++LS + + + + ++ L V+++ + KSW+VKRS EDF LD+ +H C+YDRR+S+L EL D E++ Q + YLSR S +AGN INCGP L W+E+DN GNHL+V E +S+IN PAV A VIKRY A+APDE++LEVGD +SVIDMP + WWRGK GF+VG FP HC+E++N++ Q + + +PVSK+ GK I+FLR F KSRP+K +L Q GIL+ERVFGCDLGE L +G + P VL C IE +GIVDGIYRLSG+ SN+Q+LR FD E P+L Y+ D+H + SL K YFRELPNPL T++LY+KF A+ A D +R + H VIQ+LPPPHYRT+ L+RHL+ A TNM AKNLAIVWAPNLL+ +S AA E R Q+++VE+++ +VDV F ++ A M+E + + K L ++ KL++LEEA+ R Q
Sbjct: 112 GHFPKMAECAHFHYENVEFGS--IQLSLSEEQNEVMKNGCESKELVYLVQIACQGKSWIVKRSYEDFRVLDKHLHLCIYDRRFSQLSELPRSDTLKDSPESVTQMLMAYLSRLSAIAGNKINCGPALTWMEIDNKGNHLLVHE--ESSINTPAVGAAHVIKRYTARAPDELTLEVGDIVSVIDMPPKVLSTWWRGKHGFQVGLFPGHCVELINQKV--PQSVTNSVPKPVSKKHGKLITFLRTFMKSRPTKQKLKQRGILKERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGIVDGIYRLSGVASNIQRLRHEFD-SEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNHVDVLFSGRISMA-------MQEGAASLSRP-------KSLLVSSPSTKLLTLEEAQARTQAQ 610 The following BLAST results are available for this feature:
BLAST of TCONS_00005478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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