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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005496 ID=TCONS_00005496|Name=TCONS_00005496|organism=Clytia hemisphaerica|type=transcript|length=1022bp
CCAACTCGAAGCCATCTGCGAACAGCACCATCGCAGCCACCATTACGCAC
CACCTTTGCACCACGCCCTACCACAGTACCAACTAAACATCACTTAACTA
CTACCCGCCCTACTTTACGCCCCAGCCAACCTAATAATCAAGGCAAGTTT
TCAGATTGTAATTCGATGCTTCAACTTTTGAAATCACGTCTACGTCTGGA
CGATGCAGAACCTAGTGAATCATTAACCGTCAACCGTGATCTAGAGGAGC
CTGAAGACACCGAAAACGAGATGACTGAGAAATTAAAACAGGAACTCATT
TCCAGATTAAACCCGACATCTTTGAACGATAATACAACACCTTCGCCACC
TAGTAACCCGATTTTAGAGGACGTTGACCCGATTGGGAATCCAGGTTTGC
TGCAACCGACTGCAACGACACTAGCAGCTCAGTTTGGACATCAAGCAGAT
CATAAATTACATCTCGCAAACCCGGATGGTGtattgaaacaaatattttc
tcaaattgttcCAATACAAGGTCAAGAAACAGGTGTTAACcaacaaattc
aaaatcaattaaCTCAATTGCTACAAGAAGGAAATCACAACTTGACGCCg
gagaaaattaaagaaatcgtTCGTCTTGGAGGTGCAGGATCCAGCCAAAA
TATGAACTTTGAACTTTTACAAAAACTTAGTGGAGGGCAAGCATTAACGG
ATGAAATGCAACAAAAACTTAACTTACAAACAAACTCGGTCGTCGGGAGT
GGACAGTCGTTGACCGACGAAATTCGGCAACATCTCGGTGTAGCAGCAGG
CCAGCCCTTAACCGAAGAACATTTAAAAGTTTTCGAAACACTCGATGGTG
GACGAGAATTACTCGTAGAAATTCGGGAAAAACTCGGTCTTGAAGTCAAC
GAACCAATAAACGAACATCATTTATTAAAACTCGGAAGTGTTGAAGGTGG
TCATACATTGGTCGAAAAGATTCGGCAAAAGTTCGGATTTGCAACTGGCT
ATGCAACTGGCCGCATTTCAAC Run BLAST on NCBI transcript from alignment at sc0000053:565948..568813- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005496 ID=TCONS_00005496|Name=TCONS_00005496|organism=Clytia hemisphaerica|type=transcript|length=2866bp|location=Sequence derived from alignment at sc0000053:565948..568813- (Clytia hemisphaerica)
CCAACTCGAAGCCATCTGCGAACAGCACCATCGCAGCCACCATTACGCAC
CACCTTTGCACCACGCCCTACCACAGTACCAACTAAACATCACTTAACTA
CTACCCGCCCTACTTTACGCCCCAGCCAACCTAATAATCAAGGCAAGTTT
TCAGATTGTAGTAAGTATGATTAAAACTTTGATAACATTTAATATTAACA
TTGAATTGTTAAAGTAAAGTCTTGGTCAAGGTGGTCGATGTTTAAAAATA
TAATAATTGTTAAAAGATATGAATTCGTGATGATCCTATAGTATGACGAA
TTGTTTTATACGGAAAAACGGAAGCACCCAAAGTTAGTCTGGGGTTTTTA
AATGCACTCCCGCGAGGTTAAATATGAGGAACAGAAAATGGAAAAGTCTT
ATACTACGTTAACCTAACTCCTACGCTTTATTTTCCTGTGTGATACCGTT
ACCGCCCGACAGTCTAGGCAATTCAGAACACTTTTTGGACCTACCTAAGG
TAGTCCTTTAAATTAACCCTTGTCCGTTCGTTCGTTCGTTCGTTCGTTCG
TTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTGCCAGCTTTTCTCGGG
ATCGGCTCATTAGTTTTTTCTAATATTTTGCACAAAAAAACTAATGCCAA
AAATGGCGGAAATATGCCGGAAAACTGGTTTTTGGGCATTTTCTCGAGAT
TTCATCATTAGTTTTTTCTGATTTTTTGCTCAAAGATGCGTATTAACAAT
GCCCAAAACATGGCCTAGTCCGATTCTTGAGAAAAAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAATAAAATTGATTTTTGAAGCCGGAACTTTCTAA
AAATCACCGGAACAGCCGATTTTCGCCGGAAAAACGGTATTTCTTGAATT
TCTTGAGCTGTACTTTATAAATTTTCACACTGATGCAAAATGTCAATACC
TAAATTGTGACGGAGCCCGATTTTCGAAAAAAATTCAATTCCGGCCGAAA
ATGCCTGAAATATGCATTTTCTCGAGATTTTATCATTAGTTTTTTCTGAT
TTTTTGCTCAAAGATGCGTATTAACAATGCCCAAAACATGGCCGAGTCTG
ATTTTTAAGAAAAAATTTTTTCCGGCGGAAAATGCCTGAAATATGCATTT
TCTCGAGATTTTATCATTAGTTTTTTCTGATTTTTTGCTCAAAGATGCGT
ATTAACAATGCCCAAAACATGGCCGAGTCTGATTTTTGAGAAAAAATTTT
TTCCGGCGGAAAATGCCTGAAATATGCCGGAAAAACCGGTTTTTTAACAT
TTTCTCGAATTTTCATTTTTATTTTGTTCTGATTTTTTGCAGAAAGATGC
GTATTCGCAATGTTCAAAACATGGCCGAGAATTTTTTCCGGTTGAAAATG
CCGGAAATCGCCGTTTTTGCAGATTTTCATTGGATTTTTTCCTTATATTT
CTATGTTTTTCACACAAAAACATTATTGATAACAANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCCCCCATCAACAATCAATGATGAATTTATTGCGTTGT
GTATTTTCGCTAAACGCTATATTTTCTGACTGATTTTTTTCATTTTTCTT
CTCGCATTGCTTTCTCACTTTCATCATCAGGTAGGTCCATTCAGCATGTT
GCTTGTTTTTTACTAGAATCGATTTTTTAGATAATCATTTATTCACTGTT
TTAGATTCGATGCTTCAACTTTTGAAATCACGTCTACGTCTGGACGATGC
AGAACCTAGTGAATCATTAACCGTCAACCGTGATCTAGAGGAGCCTGAAG
ACACCGAAAACGAGATGACTGAGAAATTAAAACAGGAACTCATTTCCAGA
TTAAACCCGACATCTTTGAACGATAATACAACACCTTCGCCACCTAGTAA
CCCGATTTTAGAGGACGTTGACCCGATTGGGAATCCAGGTTTGCTGCAAC
CGACTGCAACGACACTAGCAGCTCAGTTTGGACATCAAGCAGATCATAAA
TTACATCTCGCAAACCCGGATGGTGTATTGAAACAAATATTTTCTCAAAT
TGTTCCAATACAAGGTCAAGAAACAGGTGTTAACCAACAAATTCAAAATC
AATTAACTCAATTGCTACAAGAAGGAAATCACAACTTGACGCCGGAGAAA
ATTAAAGAAATCGTTCGTCTTGGAGGTGCAGGATCCAGCCAAAATATGAA
CTTTGAACTTTTACAAAAACTTAGTGGAGGGCAAGCATTAACGGATGAAA
TGCAACAAAAACTTAACTTACAAACAAACTCGGTCGTCGGGAGTGGACAG
TCGTTGACCGACGAAATTCGGCAACATCTCGGTGTAGCAGCAGGCCAGCC
CTTAACCGAAGAACATTTAAAAGTTTTCGAAACACTCGATGGTGGACGAG
AATTACTCGTAGAAATTCGGGAAAAACTCGGTCTTGAAGTCAACGAACCA
ATAAACGAACATCATTTATTAAAACTCGGAAGTGTTGAAGGTGGTCATAC
ATTGGTCGAAAAGATTCGGCAAAAGTTCGGATTTGCAACTGGCTATGCAA
CTGGCCGCATTTCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005496-exon-sc0000053-1575043694:568654..568813 | TCONS_00005496-exon-sc0000053-1575043694:568654..568813 | Clytia hemisphaerica | exon |
| TCONS_00005496-exon-sc0000053-1575043694:565948..566809 | TCONS_00005496-exon-sc0000053-1575043694:565948..566809 | Clytia hemisphaerica | exon |
| TCONS_00005496-exon-sc0000053-1510915933:568654..568813 | TCONS_00005496-exon-sc0000053-1510915933:568654..568813 | Clytia hemisphaerica | exon |
| TCONS_00005496-exon-sc0000053-1510915933:565948..566809 | TCONS_00005496-exon-sc0000053-1510915933:565948..566809 | Clytia hemisphaerica | exon |
| TCONS_00005496-exon-sc0000053-1491911889:568654..568813 | TCONS_00005496-exon-sc0000053-1491911889:568654..568813 | Clytia hemisphaerica | exon |
| TCONS_00005496-exon-sc0000053-1491911889:565948..566809 | TCONS_00005496-exon-sc0000053-1491911889:565948..566809 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000053 | supercontig | sc0000053:565948..568813 - |
Blast
The following BLAST results are available for this feature:
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