TCONS_00005534 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005534
Unique NameTCONS_00005534
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length409

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005534 ID=TCONS_00005534|Name=TCONS_00005534|organism=Clytia hemisphaerica|type=transcript|length=409bp
AGATCTGGATATGGATGTGGTTGTCGTTTCGGTTGTGGCTGCGGTTGCGG
ATATCCTCTTTCTTGAGACACTTCGGGCCCATTTTCCTCTTCCTCTTCTT
CCTCTTCATCAACACATGCAGTATACTCATAGGGAACATTTCTGCAGTTA
AACATATCATAACACAACTCCGACCATCCGTATATGTGCCGTGATCCTCC
AACACAGGGATGTCCGAATCCACCACCAGACGGGTGCTGGGATTGAAAAC
ATTTGTTAAGCTTTACATTAGAGCATGCAAAAAAGCTTTCCAAATCTTCT
TCGTCAGTGCAGATTGCATACACGGTTGACAAACACACGTGTTTTGCATT
GAAGTAGCGTTTAGCAATCGACTTTGAAAAACATGTtgaaatgcttataa
gaataataa
Run BLAST on NCBI

protein sequence of TCONS_00005534-protein

>TCONS_00005534-protein ID=TCONS_00005534-protein|Name=TCONS_00005534-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
IILISISTCFSKSIAKRYFNAKHVCLSTVYAICTDEEDLESFFACSNVKL
NKCFQSQHPSGGGFGHPCVGGSRHIYGWSELCYDMFNCRNVPYEYTACVD
EEEEEEEENGPEVSQERGYPQPQPQPKRQPHPYPD
Run BLAST on NCBI

transcript from alignment at sc0000053:542779..543187

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005534 ID=TCONS_00005534|Name=TCONS_00005534|organism=Clytia hemisphaerica|type=transcript|length=409bp|location=Sequence derived from alignment at sc0000053:542779..543187 (Clytia hemisphaerica)
ttattattcttataagcatttcaACATGTTTTTCAAAGTCGATTGCTAAA
CGCTACTTCAATGCAAAACACGTGTGTTTGTCAACCGTGTATGCAATCTG
CACTGACGAAGAAGATTTGGAAAGCTTTTTTGCATGCTCTAATGTAAAGC
TTAACAAATGTTTTCAATCCCAGCACCCGTCTGGTGGTGGATTCGGACAT
CCCTGTGTTGGAGGATCACGGCACATATACGGATGGTCGGAGTTGTGTTA
TGATATGTTTAACTGCAGAAATGTTCCCTATGAGTATACTGCATGTGTTG
ATGAAGAGGAAGAAGAGGAAGAGGAAAATGGGCCCGAAGTGTCTCAAGAA
AGAGGATATCCGCAACCGCAGCCACAACCGAAACGACAACCACATCCATA
TCCAGATCT

Coding sequence (CDS) from alignment at sc0000053:542779..543187

>TCONS_00005534 ID=TCONS_00005534|Name=TCONS_00005534|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at sc0000053:542779..543187 (Clytia hemisphaerica)
attattcttataagcatttcaACATGTTTTTCAAAGTCGATTGCTAAACG
CTACTTCAATGCAAAACACGTGTGTTTGTCAACCGTGTATGCAATCTGCA
CTGACGAAGAAGATTTGGAAAGCTTTTTTGCATGCTCTAATGTAAAGCTT
AACAAATGTTTTCAATCCCAGCACCCGTCTGGTGGTGGATTCGGACATCC
CTGTGTTGGAGGATCACGGCACATATACGGATGGTCGGAGTTGTGTTATG
ATATGTTTAACTGCAGAAATGTTCCCTATGAGTATACTGCATGTGTTGAT
GAAGAGGAAGAAGAGGAAGAGGAAAATGGGCCCGAAGTGTCTCAAGAAAG
AGGATATCCGCAACCGCAGCCACAACCGAAACGACAACCACATCCATATC
CAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003152XLOC_003152Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005534-proteinTCONS_00005534-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005534-exon-sc0000053-1491911889:542779..543187TCONS_00005534-exon-sc0000053-1491911889:542779..543187Clytia hemisphaericaexon
TCONS_00005534-exon-sc0000053-1510915933:542779..543187TCONS_00005534-exon-sc0000053-1510915933:542779..543187Clytia hemisphaericaexon
TCONS_00005534-exon-sc0000053-1575043694:542779..543187TCONS_00005534-exon-sc0000053-1575043694:542779..543187Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:542779..543187 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.37039	2.07578	2.61103	5.50197	2.39219	2.07937	1.14031	2.13508	0.298964	0.185158	0.179719	0.23628	17.4604	12.3744	0	0.108096	4.12812	4.0947	58.2676	46.7655	29.3281	31.3711	10.1695	9.8003	18.4741	28.7259	0	0	0.196888	0.401195
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005534 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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