TCONS_00005588 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00005588
Unique Name	TCONS_00005588
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1945

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000054:471309..478416+

transcript sequence

>TCONS_00005588 ID=TCONS_00005588|Name=TCONS_00005588|organism=Clytia hemisphaerica|type=transcript|length=1945bp
NGTTGATGAAACCATCAAAGGAACAACTCGATGGATTCATTGAAACGCAC
CCACTTCAACTCACACCGGGTGTCAAGAAGCTTGTATCAAAACTTCACGA
ACGAAAGAAGGATGTTTATTTAGTATCTGGTGGTTTTCGAAGTTTCATAG
CACCAGTAGCAAAAAAACTGAACATTCCCCTTGATAACTTGTTTACTAAT
ATATTCATCTTCAATGACGATGGTTCTTACGGAGGATTTGACAAAGATCA
ACCAACGTCATCGTCGGGAGGGAAGAAAGTTGTCGCTACAAAACTTAAAA
CAGAAAAAGGATATAAAAGtTTGGTAATGATCGGTGACGGGGTAACAGAT
CTGGAAGCCTATCCACCCGCTGATCTCTTCATCGGTTTTGGTGGTAATAA
AATACGTGAAAATGTTCGGCAGAATTCTCCATGGTTTGTCACTCAATTTC
AAGAACTAATTGATGTTTTGTGATTGGTAGCTAATGTAGTCATGTGATCT
AGTGAATCTAGTGAACTTATGCTCTCGGGTATCTATTAAGCGTCTCCCCT
GCTTTTTAACTTTTAGGGTCTATCCTTTCCACCTATTCCGCCGTTTATTT
TACGGCAATTggaaaaaaagtggaaaatttttagaagattttgaaatttc
agtcccattctgggtccttttttttgcaaattttgacaaaatttttaaaa
aacaagttccACGTAGAGTCCATTTTTTGAACCTCAGCttgtatgtatgt
ctgtctaTATGTCAcctcaaaactttggggcaggctggagacttcaaaaa
tggtccgatttggctgaaatttttcacacttgTTCCTGGGGTGAATATCT
GagagtgattttttttcaaaattttcatttcacgGGCGTGGTCACAAGGT
TTAGCCCAAAAAGAGGCTAAAACTTTTCTTATATCAAAAATTTCCTGTCG
ATGTTTAAAATTGGGCCCATGAGTAATTTAAAAGATACTTAAATTGAGTc
cgtgcggttagcacgttcgacaattgacaattttttgtaatttaacgttt
tttcagaaaaatcttgGGTAAGAATTGCAATTTCTGTACTTCCTCTTTTT
TCATTGGATCTTTCAATTTTGGAAGTGTACAGCTTTCAGACTGTATTCTC
AACCTTATtcgaacatttttgagcttttagattcTGAAAGCCTAACGTTA
AACCTCTTCTTTCCGAGCGTATTTTAAAGCACTAAAAAAATTTCCCACGA
TTTCCTTTTAGTACCAAATATTGTGGCGGAAATTGTAGaatgattcaaaa
taaataaacaacacaaaaatttgattttttttaaacaaagctTTTCGAGT
CTTAACTGCTCATCATcaggttaaaaaaaaatattggaattgCTTATGAA
AAATACGTAACCCATGAACaaatgaatagaccttttcataaactacgtca
cgaacatcacttgtctcgtattcaaacaattgccatggtgattaaggTCT
Atggagacattaaatgatttttttatgaataggaagtagttttaataaat
tcCGCTGGGAGTttatcaccatggcaataatttcaaaaccaggcaagtga
tgtttgtgacgtaatttatgaaaaggtctatattgAGTACTTATTGCGTT
GGTCAATATGAAAATACCATAGTCTTTCATCCAATTACTAGTAGGTtatt
tttctcaactttttttattttaggtagtttttttcaaattttcaaatttt
atatatttaatagcaatgataaaatttcaactttctgaaatcattttttg
tttttaccttGATTAAACGGTATGGGAGCTCAATACTTTGTTTTATTGTG
TTAGCTGACATTCAAGCTGAAATAATTCTTTCGTAAAAATATTTACGCCT
GTAAATATATGATCAGCTTCTTTTCAAATGAAGTACCGATTGCAT

Run BLAST on NCBI

transcript from alignment at sc0000054:471309..478416+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00005588 ID=TCONS_00005588|Name=TCONS_00005588|organism=Clytia hemisphaerica|type=transcript|length=7108bp|location=Sequence derived from alignment at sc0000054:471309..478416+ (Clytia hemisphaerica)
NGTTGATGAAACCATCAAAGGAACAAGTAATCATAACAATTTTAATCCAT
TGATTAAATTGATTAAACACGTTTAttgcttcgtagtacactctgtgcgc
attgtctgtttgataaaaaaattcccgtacgaaGAACTCTGTGATGAAGT
ATGATTCATAAACAAcaacacttctctcgtcgtctcccctctctcataaa
cactccatcgcagcggtcggtttgaaaaatctaaaatgagaaaagacaat
gacaacagaccctctacggtaatgaattttgaaattagcagTAGATACTG
GGCCTGTGTGTTGACAAGGGAGTGAGGGACTTCCAAATATATCGGCCATG
AAATACCATAATCATAATAAAAGTGTTGTTAActatcaaaaatcattttt
aaaatcactttttttcTATACTTTTTTTATTCCTAGCTCGATGGATTCAT
TGAAACGCACCCACTTCAACTCACACCGGGTGTCAAGTAAGATTTcatga
aaatataatttctaCTACTAGTAGTAGTACTACAAAACTAGGAAAAATGG
CTTTCGACTGTTTAAAAGTAATCTACTTTTCAAACTAAATTTAAAAGTCG
ACTGCTGTATAAGATATTGCAGTTTTTAATACAAAAGGCCACAAATTTAC
AAAAGTTACGAACTCGAAcgggaaatcttttttgttcgagtaacagagag
attcgaattagagagtatcTTGAGAGAGTTTCTCCCTGCGGGAAATAGAA
AGATTCGATTAAAGAAGTTCGACTAAGCGAGAGCTGTATGTATTTTAGTT
TTGGCATCTTCATTTTAGGAAGCTTGTATCAAAACTTCACGAACGAAAGA
AGGATGTTTATTTAGTATCTGGTGGTTTTCGAAGTTTCATAGCACCAGTA
GCAAAAAAACTGAACATTCCCCTTGATAACTTGTTTACTAATATATTCAT
CTTCAATGACGATGGTAAGATTTGCATATTTTATATTCGAAAATAATACT
TGAAATATTGAGAGTAGATACAATATATAGTATCCACATAGAGTCCTCCA
GGGTTCAGGTACCCCAAAAAACTTAGGTACCTCAATCATTTTggtacccc
caaaatttttagaattctaaTTAGTCCCCCTACTTTGAGTGAGTTACCCC
TTTTTTAAAGTCTTCTAAATGAAATGGTTCAATTCAAAATAGGAAAATTG
GGTTAGTCCAGGAAATTACtttatacaaaaacaacagcccCCCCCACTAC
CTTGTCCTCAaaggttaatattttctctttgaaaacttgacctctgatac
tcagggtacgcccccactaatgaaaatgcaggtactcccaaacatatcag
gtaccccctaaatttaagaatacttcCAGGTACCTTGCTTCTTTagcact
ttttatttttaggtacccccaaatttCTGCAGGGGGTGGACCCTATGATC
CATCTTCCCAAGAAAAGTTTTTCTATGGCATTTTACTTTTCATCGCTTTT
CTCACTTCTTATTTCAATAACAACGAAATTATTATATATAAACTTTTTCG
GATCAAATTAGCTCATATGCAAGAAGTTACAGGCACCAGTTAAAGGAATA
TGATCTTAGATTATAGCTCTTTCCTGCTTTTGAGAGATTATGAGGAAAAG
TTTGGAAGATATCCAGCCCAGAAATTATGCCCAGCCAAATTTTTTAAGGT
TAATCCTTAAAGAAGGCACCGCAACTTTCACCTCCCTGCCTCCTTGTAAT
GTTGATAGGGGAAGGATCTAACGGCGTAATAAATGCACTTGACTGTAGGC
TATTCCTATCCCACCACGCggttttttgatcaaatttgttTTACGTGTTT
TACTTTAgacccgggggggtactagggttgcaagctgacgAGTATGTGTC
GCCCGATTtttgaccctcggacccttagtgggactaaaaaggagaaaaaa
tgtTGCGATTTTTGCGACCGTTATTGGACTAATATGTCCAAATTTTTCAA
GGAGAAAAAAGTTgagattttcatatttttccgaTCCTTAGTtggactga
aatttaattttctgttttttccaACTCTTACAGAGACTTTCAGGTCCCAA
AAAAGACTTCCTTAAGGGCGACACATTCCCCGTACCCTTTACATTGATGT
GGTGTCAGTTCATTGAAACAGTATTGCGATGAGTTCAAGTGACGTCAACC
CCCTTCCCGCAGGATCCTAGTaatatatttgtaaaaaattacaGATAGAA
CAGAGTGTCGAGAAGAAAATCGTGTCGGTCTGGTACATGCaaacttaaag
ggataatcaatGAGCAAAGGTCGAGATATTTAAGTTTTTGTCTTTTAGGA
TGATGAcccattttcgaaaatttcaaattttgatatcttgattttggaaa
attattacACAAAAATACNgaaaatttcaaattttgatatctcgattttg
gaaaattattacacaaaaatactttgaggttttactaAGGACCACAGAAA
AGGTTTCCGtaatctaaatatctcaaaccatctgattatctctTTAACTG
AGGACTGAATGAACTGGACTTTTCTGAACCACATGACTTGTCAATTTTCA
AGCAGAGGAGTTCAGTTTAAATTTAANCTGAACTGGACTCTTCTGAACCA
CATGACTTGTCAATTTTCAAGCAGAGGAGTTCAGTTTTAAATTTAATAGT
TTATGTATAAGGATTGGTATTCAATAGCTACACATTTCAACACATTAAAA
CCATAGAATAAGTATTTTGAGAAGAAGtcatttaaaaataattcaaattc
aataagTAAAGGTATATTATAGAATTTTAATCATTTCAACGTACTGTAAT
TTGTATATTAGGTTTCTAACATCGCGTTGGTTTACAACCTACACCCAAAA
CCACTCAACATAACCTAATTGCTAATCAATACTTGAAAGTATGAGATAAT
GGAATATAAATTCATGAATTAATGAATAAAACAGAATTCTTCTTTATAGT
GAAGTTATTATTGCATATAAATAGATTTCTTCCCTATAGAGAAGTTATTA
TTGCATATTAATTTGTATGATTTTGTCAAGATTAATCACTTCATGATCAC
TTTCGCTTCAATAAATATCGAAAGTGCAACTTTTGAGAAACATTTTCTAT
GTTGGCGACAAAGGTCAAAGATTGAATTCAAAGgattttttctttgtcaa
attCATGTTTGGAAATTCAGAAGACTGTTGTTAGGGGTGCAGTATCTAAA
TCTGATTCAAAGTTGATTAATTCCTCAAATATGGGCCAGCTTACTACAAG
ATCTGGTAACATCGTTTTTAACACAATAGAGATTGAAAATGTAATGGGTG
ATATTTACAAGACTGGAGTGCTGAGACTATCCATTCTTTCTTACAATCAA
CGTTTAGCATTCACTATATGCTATTTAATAATGACTTGTTTTGGAGGTGT
TTCAAACATGTTATCTATCATCTGTCTACGTAAAAAATACAAACTGTCGA
AGCGAAACCAGATGGATAAACTATTGCTTTCTTTAGCCTCGTGTGAGACT
CTTATTTCATTTACAGTCTATCCGCTCAATGCTTGGATTGAATTTTGGGA
AAACATACCATTCAATGATAAATATAGAAGACTTAAAGCCTTCTGGATAT
TAAGTTTGTGCCTAATATCAAAGCTACTATAATTCTGTTAGCAGTCGTCA
GATATTTGAGCCTTAAGAGAATCGATACGTGTAACTTATGGTTGATCAAA
GGATACCGCTTAAACGTGACAATCGTGTTTTCGTGGTTGCTTCCTTTCGG
TTTAATATAGTATATTTAGTATAGAATCAGTGTCATTAATActgcttttg
tttttttaacattGATCATACTACCGACAATGTATATTTTAATCATTGCA
CAATATCGAAAGTCCAGACAACGTGTAAATACCCTACAATCGAAGGTTCC
AAAACGTGATCAAATAACAATCAGAACAACCAAAAGACTCGTCCGGCGTT
CTCTATGGTTGATTGGTGCATATTTCTTATCAACAATATTAGCTAGCCCA
GCCATTTATGTGTTTCTTAGCAACGAGATAGTAAATGGATGGTGGTATCA
TTTGACCAATATTTTGTATCTTGCTAATTCTTGTGGAAACCCGTCTATTT
ATTATTACACTGATCAAAGGATAAGAAGAATCGCCAAGAATCTTTTTAAA
AGAGATCAGAAAacgtaaatttgaaaattttattctgCACGAGCCTGATA
TGCCGAATCTTGCAGGTGCTGACTTCAAGTGTCGTTACACAGTTGGTCAC
GTGTAAACTTAACCTCGTTACATAATTTACCGTTGCTTGCTCACCTCTCT
GTAAAATAAAGTCatttgtgtcacagacccgttgggaccccagccccact
gggaaatttggcaaaaatttcgtccacGATGGGAAAATatcctgaaattt
cagccccactgcgccactggaaaattgactttgatttcatccccattaga
AATTCactgtttaaaaattgcactccaaacccatccccactgaatttttt
aaccttggaacaatagaatttttatccccattgggatttcaataggaaat
tttatccccactgaggaaaaagtccCACCGGGGccgtgagacaggggtgt
ttgtaTTATCTCAATTTAAGTATTATAAATCAGAACTGTATATAATCTTC
GTAGTATCATAAAAATCTCGTAACCAGAGCCTCATAACTGACTTTTTGAT
TTACTGATGAAAATAGACATCAGTcaaaattgatgattttttgaaaaact
ttcgcAAGCATATTACCAAGTATGATTTGGttttgaaaatgagattttgg
tAAGCATAATAAGCGTCAGCCCGAATTTACCGTCTGCTTGCTTATGTATA
AAGCAAAAGAAGTTTAATCTCAATTATCTTATTCTTTTAGGTTCTTACGG
AGGATTTGACAAAGATCAACCAACGTCATCGTCGGGAGGGAAGAAAGTTG
TCGCTACAAAACTTAAAACAGAAAAAGGATATAAAAGGTATGTTAAATAG
GTGTAATTGTTTCTCAATATCGAAATATTATCTTCACTCTCATTATCTCT
ATAAACATATAACTGGTACCCTTAGCAATCACGTTTAATGTGTAACAcag
aacttttttctgggacaccctgtagagaCTGGATTACGAGTAAACTAAAG
GATCCAGATAACTTGTTTCCGTTACGGGAAAATTTAAGTTATTGGAGATT
TCAGTTAAGTGCAATCATGGGCGAAAATTGTGAGacaacccccctccccc
ccagTGGCAATGTTGAAGGGCATTGGAAAAGTCGGTGGGAAGGTCGTTCG
GAAGGGGGGaccgttcttttttttttcaagagtattttccagtgtttttc
tcaaacattaaagtccatgattgtagatgcAACTGGATTTTGGACTTTTA
TTGTAacgaaaattcaattttttttctaatagtTTGGTAATGATCGGTGA
CGGGGTAACAGATCTGGAAGCCTATCCACCCGCTGATCTCTTCATCGGTT
TTGGTGGTAATAAAATACGTGAAAATGTTCGGCAGAATTCTCCATGGTTT
GTCACTCAATTTCAAGAACTAATTGATGTTTTGTGATTGGTAGCTAATGT
AGTCATGTGATCTAGTGAATCTAGTGAACTTATGCTCTCGGGTATCTATT
AAGCGTCTCCCCTGCTTTTTAACTTTTAGGGTCTATCCTTTCCACCTATT
CCGCCGTTTATTTTACGGCAATTggaaaaaaagtggaaaatttttagaag
attttgaaatttcagtcccattctgggtccttttttttgcaaattttgac
aaaatttttaaaaaacaagttccACGTAGAGTCCATTTTTTGAACCTCAG
CttgtatgtatgtctgtctaTATGTCAcctcaaaactttggggcaggctg
gagacttcaaaaatggtccgatttggctgaaatttttcacacttgTTCCT
GGGGTGAATATCTGagagtgattttttttcaaaattttcatttcacgGGC
GTGGTCACAAGGTTTAGCCCAAAAAGAGGCTAAAACTTTTCTTATATCAA
AAATTTCCTGTCGATGTTTAAAATTGGGCCCATGAGTAATTTAAAAGATA
CTTAAATTGAGTccgtgcggttagcacgttcgacaattgacaattttttg
taatttaacgttttttcagaaaaatcttgGGTAAGAATTGCAATTTCTGT
ACTTCCTCTTTTTTCATTGGATCTTTCAATTTTGGAAGTGTACAGCTTTC
AGACTGTATTCTCAACCTTATtcgaacatttttgagcttttagattcTGA
AAGCCTAACGTTAAACCTCTTCTTTCCGAGCGTATTTTAAAGCACTAAAA
AAATTTCCCACGATTTCCTTTTAGTACCAAATATTGTGGCGGAAATTGTA
Gaatgattcaaaataaataaacaacacaaaaatttgattttttttaaaca
aagctTTTCGAGTCTTAACTGCTCATCATcaggttaaaaaaaaatattgg
aattgCTTATGAAAAATACGTAACCCATGAACaaatgaatagaccttttc
ataaactacgtcacgaacatcacttgtctcgtattcaaacaattgccatg
gtgattaaggTCTAtggagacattaaatgatttttttatgaataggaagt
agttttaataaattcCGCTGGGAGTttatcaccatggcaataatttcaaa
accaggcaagtgatgtttgtgacgtaatttatgaaaaggtctatattgAG
TACTTATTGCGTTGGTCAATATGAAAATACCATAGTCTTTCATCCAATTA
CTAGTAGGTtatttttctcaactttttttattttaggtagtttttttcaa
attttcaaattttatatatttaatagcaatgataaaatttcaactttctg
aaatcattttttgtttttaccttGATTAAACGGTATGGGAGCTCAATACT
TTGTTTTATTGTGTTAGCTGACATTCAAGCTGAAATAATTCTTTCGTAAA
AATATTTACGCCTGTAAATATATGATCAGCTTCTTTTCAAATGAAGTACC
GATTGCAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003172	XLOC_003172	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000054	supercontig	sc0000054:471309..478416 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.39726	0.572594	1.44753	1.3895	0	0	0	0	0.500327	1.12963	0.294555	0.234174	0.300057	0.169477	0.450141	0.239734	0.108364	0.360583	0	0	0.690236	0.696625	0.257534	0.46814	0	0	0.841149	0.660825	0.563395	0.409177

Blast

[Close]

BLAST of TCONS_00005588 vs. Swiss-Prot (Human)
Match: SERB (Phosphoserine phosphatase OS=Homo sapiens GN=PSPH PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 8.330e-50
Identity = 82/156 (52.56%), Postives = 108/156 (69.23%), Query Frame = 3

Query:    3 LMKPSKEQLDGFIETHPLQLTPGVKKLVSKLHERKKDVYLVSGGFRSFIAPVAKKLNIPLDNLFTNIFIFNDDGSYGGFDKDQPTSSSGGKKVVATKLKTEKGYKSLVMIGDGVTDLEAYPPADLFIGFGGNKIRENVRQNSPWFVTQFQELIDVL 470
            L++PS+EQ+   I   P  LTPG+++LVS+L ER   V+L+SGGFRS +  VA KLNIP  N+F N   F  +G Y GFD+ QPT+ SGGK  V   LK +  +K ++MIGDG TD+EA PPAD FIGFGGN IR+ V+ N+ W++T F EL+  L
Sbjct:   68 LIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGKGKVIKLLKEKFHFKKIIMIGDGATDMEACPPADAFIGFGGNVIRQQVKDNAKWYITDFVELLGEL 223

The following BLAST results are available for this feature:

BLAST of TCONS_00005588 vs. Swiss-Prot (Human)

BLAST of TCONS_00005588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SERB	8.330e-50	52.56	Phosphoserine phosphatase OS=Homo sapiens GN=PSPH ...	[more]

You are here

TCONS_00005588 (transcript) - C. hemisphaerica