TCONS_00005683 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005683
Unique NameTCONS_00005683
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length803

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005683 ID=TCONS_00005683|Name=TCONS_00005683|organism=Clytia hemisphaerica|type=transcript|length=803bp
GTCAATTTATCATCATTCGAAAATGTTCTATCTTTGCTTCAACTGTCCAA
ATAATACGCTAATGATCGTTTGTTTTGCTGAAAtaagtcaaaaattaatg
attttggtctttcttttttccaaaatatacaGGTTCATTTATACCACTCA
GTCCTGGATAATTAAGTCTGCCTCTTCAATCTACAAGTCGCAAACCAATG
TTACTGGGAACCAATCTCGAAATATCTCCGTTAAACACACATAACTTCTC
TATTTCTGCATTAAAACCCAAATCGCTCCTAAAACCAACAAACCCATAGT
CGCAAAAGAAGGAATTGCCATGGATGCACGTCCACACATGTGTGCGTGGT
CAAACTTGGATGTTTCATTATAACACTTAGCGATTGGTTGTTTACGATAA
TGCGTCGCATTTTGCTGGTTGCGAACACACCATTCAGCTTTTGGTGTTCT
TAGCTCCTCTCTTTTAGGGTAATAAGGATCTTGAAAACATTTATTTTCAC
AAGCTTCTGAGTCATCAGAACCAATTGACATCTCTAATAAATAAACATTG
GTGCCTGGTATAACTTGGATACGAAACTTCGGTGCATTTTTCCCTGTACA
TTGACCAGGACATTTGAAAGCATCCCACGTTTTGTCTTCCATGCGAGCAC
CGTATGCTTCAATCAAGGTACGGTTCAGACGAAAATATTCGACCTCTTTA
ACACAGCTTACAGTAATTTTAGTATGCTCGCCAGCTGAGACTTCATGTTG
ATTCTGCATTAAAGAAACCAGTAATACTACAGCTTGTATAGTCACCCAAT
AAA
Run BLAST on NCBI

protein sequence of TCONS_00005683-protein

>TCONS_00005683-protein ID=TCONS_00005683-protein|Name=TCONS_00005683-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
YWVTIQAVVLLVSLMQNQHEVSAGEHTKITVSCVKEVEYFRLNRTLIEAY
GARMEDKTWDAFKCPGQCTGKNAPKFRIQVIPGTNVYLLEMSIGSDDSEA
CENKCFQDPYYPKREELRTPKAEWCVRNQQNATHYRKQPIAKCYNETSKF
DHAHMCGRASMAIPSFATMGLLVLGAIWVLMQK
Run BLAST on NCBI

transcript from alignment at sc0000054:24347..25149

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005683 ID=TCONS_00005683|Name=TCONS_00005683|organism=Clytia hemisphaerica|type=transcript|length=803bp|location=Sequence derived from alignment at sc0000054:24347..25149 (Clytia hemisphaerica)
TTTATTGGGTGACTATACAAGCTGTAGTATTACTGGTTTCTTTAATGCAG
AATCAACATGAAGTCTCAGCTGGCGAGCATACTAAAATTACTGTAAGCTG
TGTTAAAGAGGTCGAATATTTTCGTCTGAACCGTACCTTGATTGAAGCAT
ACGGTGCTCGCATGGAAGACAAAACGTGGGATGCTTTCAAATGTCCTGGT
CAATGTACAGGGAAAAATGCACCGAAGTTTCGTATCCAAGTTATACCAGG
CACCAATGTTTATTTATTAGAGATGTCAATTGGTTCTGATGACTCAGAAG
CTTGTGAAAATAAATGTTTTCAAGATCCTTATTACCCTAAAAGAGAGGAG
CTAAGAACACCAAAAGCTGAATGGTGTGTTCGCAACCAGCAAAATGCGAC
GCATTATCGTAAACAACCAATCGCTAAGTGTTATAATGAAACATCCAAGT
TTGACCACGCACACATGTGTGGACGTGCATCCATGGCAATTCCTTCTTTT
GCGACTATGGGTTTGTTGGTTTTAGGAGCGATTTGGGTTTTAATGCAGAA
ATAGAGAAGTTATGTGTGTTTAACGGAGATATTTCGAGATTGGTTCCCAG
TAACATTGGTTTGCGACTTGTAGATTGAAGAGGCAGACTTAATTATCCAG
GACTGAGTGGTATAAATGAACCtgtatattttggaaaaaagaaagaccaa
aatcattaatttttgacttaTTTCAGCAAAACAAACGATCATTAGCGTAT
TATTTGGACAGTTGAAGCAAAGATAGAACATTTTCGAATGATGATAAATT
GAC

Coding sequence (CDS) from alignment at sc0000054:24347..25149

>TCONS_00005683 ID=TCONS_00005683|Name=TCONS_00005683|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at sc0000054:24347..25149 (Clytia hemisphaerica)
TATTGGGTGACTATACAAGCTGTAGTATTACTGGTTTCTTTAATGCAGAA
TCAACATGAAGTCTCAGCTGGCGAGCATACTAAAATTACTGTAAGCTGTG
TTAAAGAGGTCGAATATTTTCGTCTGAACCGTACCTTGATTGAAGCATAC
GGTGCTCGCATGGAAGACAAAACGTGGGATGCTTTCAAATGTCCTGGTCA
ATGTACAGGGAAAAATGCACCGAAGTTTCGTATCCAAGTTATACCAGGCA
CCAATGTTTATTTATTAGAGATGTCAATTGGTTCTGATGACTCAGAAGCT
TGTGAAAATAAATGTTTTCAAGATCCTTATTACCCTAAAAGAGAGGAGCT
AAGAACACCAAAAGCTGAATGGTGTGTTCGCAACCAGCAAAATGCGACGC
ATTATCGTAAACAACCAATCGCTAAGTGTTATAATGAAACATCCAAGTTT
GACCACGCACACATGTGTGGACGTGCATCCATGGCAATTCCTTCTTTTGC
GACTATGGGTTTGTTGGTTTTAGGAGCGATTTGGGTTTTAATGCAGAAAT
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003208XLOC_003208Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005683-proteinTCONS_00005683-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005683-exon-sc0000054-1491911889:24347..25149TCONS_00005683-exon-sc0000054-1491911889:24347..25149Clytia hemisphaericaexon
TCONS_00005683-exon-sc0000054-1510915933:24347..25149TCONS_00005683-exon-sc0000054-1510915933:24347..25149Clytia hemisphaericaexon
TCONS_00005683-exon-sc0000054-1575043694:24347..25149TCONS_00005683-exon-sc0000054-1575043694:24347..25149Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:24347..25149 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0582431	0	0	0	0.0636477	8.64186	8.35162	6.32074	4.51242	3.91094	4.8627	4.06972	3.54233	1.76208	2.01364	2.27227	1.98476	2.14106	3.62235	4.48558	4.40246	1.44085	1.31291	9.09598	11.7307	0.682341	1.28242	0.13351	0.0690966
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005683 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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