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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005684 ID=TCONS_00005684|Name=TCONS_00005684|organism=Clytia hemisphaerica|type=transcript|length=2578bp
atcgagacatgaaaaatgactatattgtaatctgttttcaatgaataatc
taaaatgtactggagatgacatgtaggcgttaataatgcgCGCACTCTTT
tacgagcgtgatgcgtgatggaaggcggtcgtttcagtgtggtttagatc
cacactgtgacctagtatttTGCAGTAAGGATTGGtttattcgattattt
tcagtggggacgaaAATTAGAGAATGATTTtacaccggggacgatatttt
ggccaatttttccagtgggaaggggttccagtgggtctgtgagaaagggg
tgtgtaaaaatacactaaaatcacAATATATATTTTGGCCATAAAATAAC
CTAAAAATGGTCACATTGCTTTATTCATaaaaatacttgaaaatttacaa
tttttgaaaaattatacgtaaaatgctaaaatttatctaaaatttcattt
tccctaTTGAAAAATGGCTtgtaaagattttgaaatacttggataaatga
aataaattttttctaaatttttttattaacaaGTTTTGGTttcttgtttt
catttaaaaacatcAAGTTTGCTCATATGACGCAATGTTGTCTTTAGCCG
ATATTTGGTTTCAATACCATTATTTGTTGTTGTCTAAAGTATCGCGTGCA
AAAAGATATGCTTATTGTCACGTCATGTATGAGATGCAGTGgtaaaatta
aaacaatgaGATAAAGTCGAAGGCTTGAGGGAAAACCTTACATGTATTTT
TTTTATacgcattgcacttataagcatatctaggctcagatatggggaaa
aattaagcatatggcaagcattacttgcgcctacgaaaacaatttttttt
cctgatttgggctttttttggctggaattttacggatttttagtatttcc
ctaaatttttgctttggatataagcatccctcaagcatttttcagcctta
ttaagctttcgacctaagcatctctgagcatgttttcagatttttatatg
cttattaaaaaaacatgtacctgGTTAACATCAGAAACGAAATAAAAGAA
GCGTTAATTAGAATTCGTTATCCGAAAAACGGTGCAAATTTGGAATTTTA
AGGCATCGTTTTTGCTTGCTTTTGAAAGGTTGAAGATAACATCAACGTGG
AAAGCCCCTCTCCACctggaaaattttctcaaaacttcGTTCCCTAGTGG
GGAAAATACCTTACATGATCTAAAAATTGAACTCCGAAACCCTTCCTGGA
TTTTTTTAACTTAAAACCATAGTTTTTAAACCCCAATTTGGATTTCGATA
GATTTCTCAAAGCCCCATTGGAGCTTTGAGACAGGTGTAAATTAATCGCT
AGCCTTCGACCATATCCCATTAAATCAGTCCTTATAAATTATTCTCCGGA
TTGCAGATTTTTCCCTGAAAATCCAGTTGAGTTAACAAGTAAGAGTGTAT
ATTTATGATttgtgaattttgaaattctttgcaATCATAACCAACTCAAA
TGCCGAGATGCCGGATGCGAGTAAAGCAATACATAGTAGGAACACTCCAA
TCTTCATCGAGAAACTGCTAATAGATTCCAAAAATTTAGGTGTGTAGAGA
ATAACTCGAGCTCTGTTAATCCGTTCAATTTCAAACTTGCGGTTCAAATC
TTGGCGTTGTTTGACGTCGAGCAACGGGAAGCTACGCACTGAGTCACGCG
TGATATCGTAAAAACGTAAATGCTTACGGATGTCGAAGAACCGGTCAGCA
ATTTGAACTTGTGGCTGATGAAACTTCTCTGCGCTAACTTGGAAAGTAAA
CCAACTGTCTTTCcagattttcttgttttgagtTAGGATGtaaagtgaaa
agatatgccAAATAGCAAGGACCATACAAATTGTCAGGATAGAGCTTGCC
AGGGCGATCTTCACATGGTAAGACAGCCTCTTGATCGGAAACAACGTCAC
CAGGGACAGCATAGGGAAAAAgataacaaaaacaaagaaaaatgagGAAC
AGCAATCACCAGATAAACTTGACTGTCCACCAAAACAAAGTAATTTCCGT
AATACGGGACCAATACGGGAATTCAGTTTCCAGCACTTACGATAACAACG
TGCCATATAGTCATTCCTGTTATAAACACCATACGTGGGTTCTGTGTTCA
GGCGGAATTTCTTGTTCTGCTTCTCAGAGCCTAATAAACTTGTACTCTCC
GATGCTTGACTTTGACTTTCAGAATATTGTGATGAAAGATACATCTTCAA
TTTGATAGAAATATCTTTACAACGATTAAATAGACTGTCCAACTAATATA
AAACAGCTTTCGAGTCCTGCGCAAATTATATTCccaaaaagcttgaaaaa
aatccaaagtcACTTCAGTTCTTGAGCTCTttacagcaaattatatcatg
gTTCGTTTGTATgcagaaaaactttttataataaaatacACTACGTTTTT
GCATCTCATGAAATATGTAAAATTACACAATACATGTTTTCGGTAAACAA
AGTCCTTTGGTAGTATTCTATTGCAGTAGGAaatgacactttttgacata
tCAACTTGTCAAACTTGAATAACAGGTT Run BLAST on NCBI protein sequence of TCONS_00005684-protein >TCONS_00005684-protein ID=TCONS_00005684-protein|Name=TCONS_00005684-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MYLSSQYSESQSQASESTSLLGSEKQNKKFRLNTEPTYGVYNRNDYMARC
YRKCWKLNSRIGPVLRKLLCFGGQSSLSGDCCSSFFFVFVIFFPMLSLVT
LFPIKRLSYHVKIALASSILTICMVLAIWHIFSLYILTQNKKIWKDSWFT
FQVSAEKFHQPQVQIADRFFDIRKHLRFYDITRDSVRSFPLLDVKQRQDL
NRKFEIERINRARVILYTPKFLESISSFSMKIGVFLLCIALLASGISAFE
LVMIAKNFKIHKS Run BLAST on NCBI transcript from alignment at sc0000054:63508..66085 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005684 ID=TCONS_00005684|Name=TCONS_00005684|organism=Clytia hemisphaerica|type=transcript|length=2578bp|location=Sequence derived from alignment at sc0000054:63508..66085 (Clytia hemisphaerica)
AACCTGTTATTCAAGTTTGACAAGTTGatatgtcaaaaagtgtcattTCC
TACTGCAATAGAATACTACCAAAGGACTTTGTTTACCGAAAACATGTATT
GTGTAATTTTACATATTTCATGAGATGCAAAAACGTAGTgtattttatta
taaaaagtttttctgcATACAAACGAAccatgatataatttgctgtaaAG
AGCTCAAGAACTGAAGTgactttggatttttttcaagctttttggGAATA
TAATTTGCGCAGGACTCGAAAGCTGTTTTATATTAGTTGGACAGTCTATT
TAATCGTTGTAAAGATATTTCTATCAAATTGAAGATGTATCTTTCATCAC
AATATTCTGAAAGTCAAAGTCAAGCATCGGAGAGTACAAGTTTATTAGGC
TCTGAGAAGCAGAACAAGAAATTCCGCCTGAACACAGAACCCACGTATGG
TGTTTATAACAGGAATGACTATATGGCACGTTGTTATCGTAAGTGCTGGA
AACTGAATTCCCGTATTGGTCCCGTATTACGGAAATTACTTTGTTTTGGT
GGACAGTCAAGTTTATCTGGTGATTGCTGTTCctcatttttctttgtttt
tgttatcTTTTTCCCTATGCTGTCCCTGGTGACGTTGTTTCCGATCAAGA
GGCTGTCTTACCATGTGAAGATCGCCCTGGCAAGCTCTATCCTGACAATT
TGTATGGTCCTTGCTATTTggcatatcttttcactttaCATCCTAactca
aaacaagaaaatctgGAAAGACAGTTGGTTTACTTTCCAAGTTAGCGCAG
AGAAGTTTCATCAGCCACAAGTTCAAATTGCTGACCGGTTCTTCGACATC
CGTAAGCATTTACGTTTTTACGATATCACGCGTGACTCAGTGCGTAGCTT
CCCGTTGCTCGACGTCAAACAACGCCAAGATTTGAACCGCAAGTTTGAAA
TTGAACGGATTAACAGAGCTCGAGTTATTCTCTACACACCTAAATTTTTG
GAATCTATTAGCAGTTTCTCGATGAAGATTGGAGTGTTCCTACTATGTAT
TGCTTTACTCGCATCCGGCATCTCGGCATTTGAGTTGGTTATGATtgcaa
agaatttcaaaattcacaaATCATAAATATACACTCTTACTTGTTAACTC
AACTGGATTTTCAGGGAAAAATCTGCAATCCGGAGAATAATTTATAAGGA
CTGATTTAATGGGATATGGTCGAAGGCTAGCGATTAATTTACACCTGTCT
CAAAGCTCCAATGGGGCTTTGAGAAATCTATCGAAATCCAAATTGGGGTT
TAAAAACTATGGTTTTAAGTTAAAAAAATCCAGGAAGGGTTTCGGAGTTC
AATTTTTAGATCATGTAAGGTATTTTCCCCACTAGGGAACgaagttttga
gaaaattttccagGTGGAGAGGGGCTTTCCACGTTGATGTTATCTTCAAC
CTTTCAAAAGCAAGCAAAAACGATGCCTTAAAATTCCAAATTTGCACCGT
TTTTCGGATAACGAATTCTAATTAACGCTTCTTTTATTTCGTTTCTGATG
TTAACcaggtacatgtttttttaataagcatataaaaatctgaaaacatg
ctcagagatgcttaggtcgaaagcttaataaggctgaaaaatgcttgagg
gatgcttatatccaaagcaaaaatttagggaaatactaaaaatccgtaaa
attccagccaaaaaaagcccaaatcaggaaaaaaaattgttttcgtaggc
gcaagtaatgcttgccatatgcttaatttttccccatatctgagcctaga
tatgcttataagtgcaatgcgtATAAAAAAAATACATGTAAGGTTTTCCC
TCAAGCCTTCGACTTTATCtcattgttttaattttacCACTGCATCTCAT
ACATGACGTGACAATAAGCATATCTTTTTGCACGCGATACTTTAGACAAC
AACAAATAATGGTATTGAAACCAAATATCGGCTAAAGACAACATTGCGTC
ATATGAGCAAACTTgatgtttttaaatgaaaacaagaaACCAAAACttgt
taataaaaaaatttagaaaaaatttatttcatttatccaagtatttcaaa
atctttacaAGCCATTTTTCAAtagggaaaatgaaattttagataaattt
tagcattttacgtataatttttcaaaaattgtaaattttcaagtattttt
ATGAATAAAGCAATGTGACCATTTTTAGGTTATTTTATGGCCAAAATATA
TATTgtgattttagtgtatttttacacacccctttctcacagacccactg
gaaccccttcccactggaaaaattggccaaaatatcgtccccggtgtaAA
ATCATTCTCTAATTttcgtccccactgaaaataatcgaataaaCCAATCC
TTACTGCAaaatactaggtcacagtgtggatctaaaccacactgaaacga
ccgccttccatcacgcatcacgctcgtaAAAGAGTGCGcgcattattaac
gcctacatgtcatctccagtacattttagattattcattgaaaacagatt
acaatatagtcatttttcatgtctcgat Coding sequence (CDS) from alignment at sc0000054:63508..66085 >TCONS_00005684 ID=TCONS_00005684|Name=TCONS_00005684|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at sc0000054:63508..66085 (Clytia hemisphaerica)
ATGTATCTTTCATCACAATATTCTGAAAGTCAAAGTCAAGCATCGGAGAG
TACAAGTTTATTAGGCTCTGAGAAGCAGAACAAGAAATTCCGCCTGAACA
CAGAACCCACGTATGGTGTTTATAACAGGAATGACTATATGGCACGTTGT
TATCGTAAGTGCTGGAAACTGAATTCCCGTATTGGTCCCGTATTACGGAA
ATTACTTTGTTTTGGTGGACAGTCAAGTTTATCTGGTGATTGCTGTTCct
catttttctttgtttttgttatcTTTTTCCCTATGCTGTCCCTGGTGACG
TTGTTTCCGATCAAGAGGCTGTCTTACCATGTGAAGATCGCCCTGGCAAG
CTCTATCCTGACAATTTGTATGGTCCTTGCTATTTggcatatcttttcac
tttaCATCCTAactcaaaacaagaaaatctgGAAAGACAGTTGGTTTACT
TTCCAAGTTAGCGCAGAGAAGTTTCATCAGCCACAAGTTCAAATTGCTGA
CCGGTTCTTCGACATCCGTAAGCATTTACGTTTTTACGATATCACGCGTG
ACTCAGTGCGTAGCTTCCCGTTGCTCGACGTCAAACAACGCCAAGATTTG
AACCGCAAGTTTGAAATTGAACGGATTAACAGAGCTCGAGTTATTCTCTA
CACACCTAAATTTTTGGAATCTATTAGCAGTTTCTCGATGAAGATTGGAG
TGTTCCTACTATGTATTGCTTTACTCGCATCCGGCATCTCGGCATTTGAG
TTGGTTATGATtgcaaagaatttcaaaattcacaaATCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005684-exon-sc0000054-1491911889:63508..66085 | TCONS_00005684-exon-sc0000054-1491911889:63508..66085 | Clytia hemisphaerica | exon |
| TCONS_00005684-exon-sc0000054-1510915933:63508..66085 | TCONS_00005684-exon-sc0000054-1510915933:63508..66085 | Clytia hemisphaerica | exon |
| TCONS_00005684-exon-sc0000054-1575043694:63508..66085 | TCONS_00005684-exon-sc0000054-1575043694:63508..66085 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054 | supercontig | sc0000054:63508..66085 . |
Blast
The following BLAST results are available for this feature:
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