TCONS_00005691 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005691
Unique NameTCONS_00005691
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length262

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005691 ID=TCONS_00005691|Name=TCONS_00005691|organism=Clytia hemisphaerica|type=transcript|length=262bp
GATACCTGTTTGAGAAACTCAACTCGTTCATATGCATCTCTTTTGGGAAA
GTTTCCTTTCTTGTCCTTTGTCTTGTTCTTCTTCccttttgttttattat
tggaATTATTCATACTAAAATAAGATCTACGTAAGATTTGACTTCATTGA
TGACAGAGTTTAATACTTTGCAATCACCCCTTTAACAAAATGAAAGTTAA
CATTATCAGTGTATCAGTGATATCTTTTTgcataaatatttcaaaattta
tcagaaACTTTT
Run BLAST on NCBI

transcript from alignment at sc0000054:277902..278163

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005691 ID=TCONS_00005691|Name=TCONS_00005691|organism=Clytia hemisphaerica|type=transcript|length=262bp|location=Sequence derived from alignment at sc0000054:277902..278163 (Clytia hemisphaerica)
AAAAGTttctgataaattttgaaatatttatgcAAAAAGATATCACTGAT
ACACTGATAATGTTAACTTTCATTTTGTTAAAGGGGTGATTGCAAAGTAT
TAAACTCTGTCATCAATGAAGTCAAATCTTACGTAGATCTTATTTTAGTA
TGAATAATtccaataataaaacaaaaggGAAGAAGAACAAGACAAAGGAC
AAGAAAGGAAACTTTCCCAAAAGAGATGCATATGAACGAGTTGAGTTTCT
CAAACAGGTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003216XLOC_003216Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005691-exon-sc0000054-1491911889:277902..278163TCONS_00005691-exon-sc0000054-1491911889:277902..278163Clytia hemisphaericaexon
TCONS_00005691-exon-sc0000054-1510915933:277902..278163TCONS_00005691-exon-sc0000054-1510915933:277902..278163Clytia hemisphaericaexon
TCONS_00005691-exon-sc0000054-1575043694:277902..278163TCONS_00005691-exon-sc0000054-1575043694:277902..278163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:277902..278163 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.82193	0.621164	2.16369	4.23367	5.15409	8.82446	2.45685	6.90021	3.22067	3.32443	1.29071	2.96962	1.27092	3.9596	1.80852	1.94081	2.39092	1.9605	2.0314	0	3.07938	0.901209	9.49466	3.98401	12.3103	7.93481	0	0.932156	4.24204	7.92362
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005691 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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