TCONS_00005699 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005699
Unique NameTCONS_00005699
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length653

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005699 ID=TCONS_00005699|Name=TCONS_00005699|organism=Clytia hemisphaerica|type=transcript|length=653bp
AAAAGACTAGGTTCGAATTTTTACGTTTGAATGACGTGAAATGTCCAAAG
CCATTTCATTGGCGGATCgtattttgacgtcatttcttTTTACCTTTGTT
AGCCCAAACCCAATCCTTTTAGTAGAGTTAAGTTTACCCTGGTTAAATGA
ATATTACATTGACGCATGCTCATTCGACCCGGGTAAACTTCGCTCTCGTT
CCTAATCTAATTGTTATAGTAGGCAAAGAAATGGGCAGATTCTGCTGTTA
GCAATTGAaatctttgtttaaaatttatataaaatagtaccattttttat
aaaactgCTTTGTATTGTATAAACTTTATTACCGTTTCACTCGACGgtgt
gattttcgttacggattgTAAGGGTGTTCATACTAAAATTTGGGAGCGTT
tgggagcaagaaaacggagcagttccgttccgataaAAATAGTGGAgcaa
aaccgtttcgatctgttttgcttgcTTTGCAACGTCTTCTGTTTTgactt
ttccaattttgacgCTCACACtcgtttcggaaccgtttcgtttcggagcg
aaacggaacagtaacgtctgaacatggtcttattgACGTTAGATGGACTT
CCGAGATATTGTGAACCGAAATAAGTAGTAGTTATTGTAAATCTACAATG
CAT
Run BLAST on NCBI

transcript from alignment at sc0000054:509070..509722

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005699 ID=TCONS_00005699|Name=TCONS_00005699|organism=Clytia hemisphaerica|type=transcript|length=653bp|location=Sequence derived from alignment at sc0000054:509070..509722 (Clytia hemisphaerica)
ATGCATTGTAGATTTACAATAACTACTACTTATTTCGGTTCACAATATCT
CGGAAGTCCATCTAACGTcaataagaccatgttcagacgttactgttccg
tttcgctccgaaacgaaacggttccgaaacgaGTGTGAGcgtcaaaattg
gaaaagtcAAAACAGAAGACGTTGCAAAgcaagcaaaacagatcgaaacg
gttttgcTCCACTATTTttatcggaacggaactgctccgttttcttgctc
ccaAACGCTCCCAAATTTTAGTATGAACACCCTTAcaatccgtaacgaaa
atcacacCGTCGAGTGAAACGGTAATAAAGTTTATACAATACAAAGcagt
tttataaaaaatggtactattttatataaattttaaacaaagattTCAAT
TGCTAACAGCAGAATCTGCCCATTTCTTTGCCTACTATAACAATTAGATT
AGGAACGAGAGCGAAGTTTACCCGGGTCGAATGAGCATGCGTCAATGTAA
TATTCATTTAACCAGGGTAAACTTAACTCTACTAAAAGGATTGGGTTTGG
GCTAACAAAGGTAAAaagaaatgacgtcaaaatacGATCCGCCAATGAAA
TGGCTTTGGACATTTCACGTCATTCAAACGTAAAAATTCGAACCTAGTCT
TTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003224XLOC_003224Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005699-exon-sc0000054-1491911889:509070..509722TCONS_00005699-exon-sc0000054-1491911889:509070..509722Clytia hemisphaericaexon
TCONS_00005699-exon-sc0000054-1510915933:509070..509722TCONS_00005699-exon-sc0000054-1510915933:509070..509722Clytia hemisphaericaexon
TCONS_00005699-exon-sc0000054-1575043694:509070..509722TCONS_00005699-exon-sc0000054-1575043694:509070..509722Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:509070..509722 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0779198	0.452362	0.653218	0	0.0854557	0	0	0	0.0853362	0	0.167457	8.76846	7.48031	0.274382	0.295611	0.303715	0.370368	32.6172	82.8401	0.463539	0.113049	0.549704	0.167093	0.0857903	0	2.30611	0.826424	0.0900606	0.361437
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005699 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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