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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005744 ID=TCONS_00005744|Name=TCONS_00005744|organism=Clytia hemisphaerica|type=transcript|length=1050bp CAGATCTCATTCTATCTTCACCATCTTCGTGGAAACATGTGAGACAGGAA CTGATGGAGAGGAACACATTCGTGCTGGTAAACTAAACCTTGTGGATCTT GCTGGTAGCGAACGTCAAGCGAAAACAGGAGCTGAAGGGAGTCGCCTGAA AGAAGCAACCAAGATCAATTTATCATTAAGCGCACTTGGAAATGTCATTT CTGCATTGGTGGACGGTAAATCGAAACACATCCCTTATCGTGACTCCAAA CTCACTCGATTATTACAGGATTCACTGGGTGGTAACACCAAGACATTGAT GGTGGCCTGCATCAGTCCTGCAGACAACAACTATGATGAGACACTAAGTA CGCTGCGTTACGCCAATCGTGCCAAGAACATCAAGAACAAACCCAAGATC AATGAAGATCCTAAAGATGCATTGTTAAGACAATACCAGGATGAAATTAC GGTTCTCAAACAAATGCTGATGGGGGAAATACCCATGAGTCCGGAAATGC TTTTAAAGCTCGGTTTGAGTGGAGCCCAGGCTCAGGCTCTCAGTCCAACG AAATCAGTAGGCGCTGTGGAGCCGGAGGAACCAACACCACAAAGTACAGA GGCTAGTGAAAAAGAAGCAGAGCGGATCAAGGCTGAGTATGAAGAAAAGT TGGTGCAAATGCAGAAGAAATTCGAAGAAGAACAAGGCAACAAGAAACGA TTAGagGAAGAGATCTCCAAGCTTCAACAAGAAAGAGACCTGAAGTTAGA AGCTGCTTCCAAATCATCGCAAGATATTCAACCCGTTGGCTATGTGCAAC AGAGTGGAACAAGTGTCAACGTTGCTGGGGAATCTAACCATGATGATCTC AACGGAGAGATTTCACCGGAAATGTTACCACTGGATCGCACCAGAGGTGA TGGTATGGAGTTCAACAACAACGAccgagaagaagaagaaatagcGGAAG AActagaagaagatgaagaagatgaagatgGAGAACGAAGCAACAGTAAA ACACCTTCCTCGCAACCGCAACATAAAAGAAGACATAAAGTAATTAACCC Run BLAST on NCBI transcript from alignment at sc0000059:684643..692615+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005744 ID=TCONS_00005744|Name=TCONS_00005744|organism=Clytia hemisphaerica|type=transcript|length=7973bp|location=Sequence derived from alignment at sc0000059:684643..692615+ (Clytia hemisphaerica) CAGATCTCATTCTATCTTCACCATCTTCGTGGAAACATGTGAGACAGGAA
CTGATGGAGAGGAACACATTCGTGCTGGTAAACTAAACCTTGTGGATCTT
GCTGGTAGCGAACGTCAAGCGAAAACAGGAGCTGAAGGTATGTAAAACTA
ATAACGATTCATAATCCTAGTTGTAGTTGTGCGAAATATTAACTATATTA
CTCTTTATATTTCTCAATACACGTGATTGATGTTAATGTACACGCCATAC
ATTTAAACCTAGCTGCCACGACTAGTTAGGGAActattcaattttttaaa
attatatatttccaatcattaaaaatgtatttatttAAAGATTCTCATAG
ATTTTTAACTTCATGATAGGTATTTTTACATTTGATTCTAAAATGGAACC
CAATCAATCTTAACaatgttttggaaattttttcatcattttttttagGG
AGTCGCCTGAAAGAAGCAACCAAGATCAATTTATCATTAAGCGCACTTGG
AAATGTCATTTCTGCATTGGTGGACGGTAAATCGAAACACATCCCTTATC
GTGACTCCAAACTCACTCGATTATTACAGGTCGGTTGACGTATTCTTTTc
agatttcatttttataaaaactaggtTACTCCTAATCTTCAGGATATTTG
CGCCTCTTATTTTCTTTAGGTGTACCTATAAACCAAGAGTAACGGCTAAA
AGCCTGGAACTGTCTAAAACCAgtgaaaattttgtttagtcTCGGCTGTT
CTCAaggtttttttgctttttcattttgctttgtCATCAGAAGTATCAAG
CCCTTATATCTTAAATAAAACACTAGATGTGGCTgaagcaaaatgaaaat
ccatCTTATTAATTAGACGCCACTTCGGTGCTCTCGCCTCATCGTTTCCT
GCCATCTCAGTTCTTTGTTCTGATTTAAAGAAATGGTCTACTCAGCAAAG
AcggcgcattattttgcttcacctgccgtGTCATGACTGAGTAGCTGTAT
GTAGTGTTTTACACAAGATATCTGTGGTATCAAGTTGAAAACAATAAACG
TTCATTCCCTTTATCTCACTTAGGATTCACTGGGTGGTAACACCAAGACA
TTGATGGTGGCCTGCATCAGTCCTGCAGACAACAACTATGATGAGACACT
AAGTACGCTGCGTTACGCCAATCGTGCCAAGAACATCAAGAACAAACCCA
AGATCAATGAAGATCCTAAAGATGCATTGTTAAGACAATACCAGGATGAA
ATTACGGTTCTCAAACAAATGCTGATGGGGGAAATACCCATGAGTCCGGA
AATGCTTTGTAAGGAGGGCTTTTTATTATTAAAGGCGTTTATTATTAAGT
TTGCGTTCCACGCTGATACAGGACGTTATTTAAACCAGCATGGTATCCCA
GCATCCGAGATTcagaaaaagccttaaaaatggttttcgtagggcacccc
ttagatcagggcaaatttttgataatagggtgtagaattgacaaaaagaa
tttgcccttcgaatctcctgcagttttcgagtgaatcgatttttagttaa
tcgatagatagaacttatcaagggtctttactaacggttttttttgAAGT
CTGAAGTCGAACATCTGaggctaccaacggattcagcgtgaaaagtagat
aaagaaaatggggttatttgttaagtttctaccacctggtgccgagaaat
ggcatttttaaggcgaaaagtcgacgtttttggtgttttccgatgacgtc
agcatttttctgggagcattttcagaagaaatcattcacacagctggata
gccctgaattagtagtgtCCGAAAATAtagtttgttaactttcgatgttc
GGATcttgagatttttcatttttaaggtaggtagatatgctgaaaaactg
ctgactcagcaaaaaatatcgatagttttcaatatttttaaaaccAAAAG
CCTTTATAAATCTATAATGTAGACGATACAACAAAGTTGAGCTTGTAACA
CTAGTAAGGTTAGTTTATACTGAGAGCTCGCTCAATGATGATTCTCTGAC
CATAGAGTTTAAAGCTCCAAAAGCAGGCTAGAGAGGAAACTCTTGGGTGG
GAAATTAAGCCATTTATTAAGCCTCTTTACACAAATGCCGGATTGGAAGT
AAAATCTTTCACCGGGTTTCGGAAAATGTACCGTGTGAAGgaagcttcac
tttttcttgcttgagaattgaaaaaggttgaaaatccCTCTCTAACCCCT
CGGCTTTAAACTCGATGTTTCAGACTGACCGTCTTGGTAGTAGCTCCTAC
ATATATTACATTTGGCAAAGCATTTGTTAATGTCTTCATATCTGATTCTC
TTATTTCTATAGTAAAGCTCGGTTTGAGTGGAGCCCAGGCTCAGGCTCTC
AGTCCAACGAAATCAGTAGGCGCTGTGGAGCCGGAGGAACCAACACCACA
AAGTACAGAGGCTAGTGAAAAAGAAGCAGAGCGGATCAAGGCTGAGTATG
AAGAAAAGTTGGTGCAAATGCAGAAGAAATTCGAAGAAGAACAAGGCAAC
AAGAAACGATTAGGTTTGTTTAGTCGCTCGGTATTTTTCACCTACTATAC
GTGCGGCCTCtaagggtatattttccaagcttTTCAAATGTGTCGAAATc
aacaaagatgagaaaaattgcgctctaagggtgtaaaatgtccaaaatct
gaccatatcttgcctgaaaatggtaaaaaatatcaagaatatgCACCATA
ATGGTCAATTTTCCGctcaaatttgatcaaatttggcAGAGTTTTCTCGG
GTATTTTTCATCTCATGCTTTCGACAGAAACATAGAATACCTTTTCTTTC
CTAATTAGAAAGCATCTTTTTAAagcactttttggacctaccccggtggg
atggaggtcctataaattcacctctgtccgtccgttcgttaccatctttt
ctcgagattgaatcataggaatcatttgatttttggtacaaaggtgcaaa
atgctggtggccaaaatgtaacggagtccgattttcaaaaaacgggtgaa
aaattggattgtttttttgcatgaaagtagggtaccatcataggtaaaag
atggctcaagcagatttttgcaaaaaaatttatttggcttaaaaaacgca
tgtttatctataagaatcactattaataagcatacatcaatgttcttagt
caaattactcaattattttatgagataaatgtttttttttgctcacgagg
gcttacttttgaagcatatgtgtgtttagacatgaaattttggttgcttt
ttttttatagaaaaactggccaaattcgatatttttttataagcacatta
tcaatttacttaggtattagcttttctcgagattggctctttgattcttt
atgattttttgcacaaagatgcataactataaaccctcgaatgtgacgaa
gcccgattttcgaaaaaaaatgtttttggctaaatttgggccaaaaaacg
gctaaaaaaagggtttttggactttgtgaaatattggatcgttgtttttt
tgcatgaaagtaggtaaaagatgggtcaagcagatttttgtaaaaaaact
tttcagctcaaaaaacgcatttttatctataagaatcactattaataagc
atacatcaatgttcttagccaaattactcaattttttgatgagatagatg
tctttttatgctcacgaagtcttgaatatgaaagagtatttcaagagcat
gaaattttggtttctaaacgttttttttataaaNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNggggggggggggtctgaaAATATTTAGA
AGTTTCCTTTTACCTACTTCTATGAATTTTCAAGGGGCAAATTAGTAGTA
AGGGTAATAAAATGGAAAttaaacacaaaataaaaacgaTTTGTACTTTG
CAAATTATTCTTAAcactttaaacattttttaactcaactagaagaaaat
ttaacaaactaATTATAGAAAAAGTCTTCAAAATATTACTGAACAACAAA
AAATCGATCATTCTGCTTTCTGAACAATTTATACGATATCTCAAATAGAA
AAGATAAGTAACAAGTATAGCTAGGTCAACAATGCTGTTGAAAACGGTGT
GAGAGAGGAAGCTAAATTTATTTTGAGCATGTAAAAAAGACTTAGTTGAT
TAGTTGAACTCAAATATAAACCAATATCAacgaaaaatgagaacaatgaT
ACATTTTTCAAGCTAATGAGTGTATCTAAGTaccatcaaaatattttaaa
aaatataatttactCTACTTCTCCCAACTGCAATCATTTTAGGGTCATCA
ACCTTTTTGACAAAATCTTCGGAAAACACTTCAAACTTAATGTCATTCAG
TTTATAAGCATCTCCTCTGCTGGTTGGCTCAAAATACTGCACCATGAAGG
GGTCGGTCTGAATAACAATACCATACAATGAGTCTCTACCGTTACTAATT
TCCCAATATTGGTTAAGGTCTGGAACTTCAACGGATAGTGGAACTTGtac
ttcaaaattttcttcgatcACTGGTTCAGCATTGGCGGGTGGAGGCGTAT
TGGCCGGGGCTTCTCCTGTGTCGATACGATCTTGTTCGGCGTTTGGTTAA
ATCAGCCGTATTGGTTCGACATGACTTGTTTCTTTCGTTTCAATGCGTTT
TTTGATGCTACGCCTAGCTTTTTGATACGTGGCTTTGAATTGCGACAGAT
AAGGGATAAAAAGTTTAGATGTACTTGAATCAGTCATCATTTCGTTGAAT
TTCTCCAGAAACTCTGCATCTTTCTTAATGTCTGGATCGGAGGTGGAACT
TGATAACCTGTCGTCTAGCTTTTTCTGGACTACTGGTGAATTTGTTCGGG
CGTTTGATTCAGTGGTCTCGACGGTCTCAACGACTTCATCCGATACGGTT
TCTTCATCTAACATTTCCTCTATTTCTTCAGCTTGCTCCTCCTCGCTTAT
CTTCTCACCTTCGCAATCCATCAGCTCGCTACCCTCCACATTAGCTTTCC
TTTTAACACCCTTTGGTGGTATCAACTTCCGTATAACTTCTTTCAAACTT
TTACTTGAATTCGAAGACATCAGCTCTTTCCGAAAGGCTACCATTTCTTC
TCCAACAAGAGAAAACAGCTTATCTGAGACGAGATAATCTTCCGACCCAT
CAAGTAAATTTGTAACAAATAGTGATTTAAACTCTTTCTTGGTGTCATTC
TGGAGTGACTCCCAAGCTTCCAAAAGCATGGACATCATTTCGTTCCGGGA
AGGAGAAGGGATTTTGCTCGGATCTTTTTCAAGCTGCTCGAACATGAGTT
TCATTTCTAAATCTCGGTAGAGAGTTTTTAAGTGATGATGACAGTCGGTA
TCGTTGATCTGTACATCACCGGTAATTCCACCACCAATAACAACAAGAAC
GCAGCCCTTTTTAAACAATGCTTGGCGAACTTCGGGCATTAAATGTACTG
AATAATCGTCTAATACATATATTGCAAACCCTTGCTCAGTAAACATGTTG
AACCGATTTGGTAACGAATCAATCATACCTAAAATTTGCTCGATACGGTA
AGATCCTTTTGGAGCCCAGCGAAAATTCACACCTTCCGGAGGCGTCAAAT
GTGTCCGAGTTCCTTTCCCTTTGAACACAAATTCCGGCTTCAATTGAACC
TTCGGGTCACTGCATAGTTGCGTGAAACATGTTACTCTCTCTCTCGAAAG
CATGTAGTTTTCTTTCACAAAGACATCTTCCGACTTAAGAGAAAGTGTCT
TTTGACTTGCACTCTCATTTCGGTGTAATGGCATTTGATCTCCATTAATT
ACGGGTGGGTCAATGCCGTAAGTGTCAATAAAATACTTCCTAACAGTcca
aatgtttttcaaataatCTTTAATTCTAATTTTTCGATCTTCATACttaa
ttgaaaatttcttgTTAGGTTTTCGCAGGCTAACATTGTACTCATCCATC
CAACCTCGAATCCAATTCTTACCAAATTTCAATTGTTCATTCTCAGGGAT
AGGTTCAGGCTGTTGTTTTAACCATTCCTCGTAGACTTTTAAGCACTTCG
AACGAAACATTTTAATCGGCAAACGTCCTTTAAGAGTCCCTCTTACGTTG
ACAAACCATTCAAACATTGCCTGTCTCACCTCAGGTGCTTTACATTTTCT
TCCACCTCCCTCCTGTCGGAATTTCTTTTTGGAGGGCTCCTCGTTATCAA
AACCTCCATTCAGTAATTTTTCGTGGCATCTTTTCGCCAATTTCAAAGCA
CTTGATAGGTTGGGGTCATTATGTTTAGCATCGGTAAGGTCGCTGTAGAA
CTCTCTTACTGCAGTCGCTAGAAATCCTTGCTTTGGTTTCTTCGGTACGT
GTTTCTTTGTCCTATAATCATACGTTGTTTGTCCTCGTAAAGCTGCAACT
TCTTCATCGTATTTCTTCTTATACTTTTCAACCGATTCTCCGAGTTCCTT
CTTTTCATTCAAAGAAAACTTTTCTTTCGCTCGATACCTTTTATGCCATT
GCAAAATATTTGTGTTATAAAGATCACGAGCTGTTGTTTACAAACAGCTT
TTTCAACAACATTCAAAATTCGaatagaaacattcgaaaacaaaattcga
acgttcgaaatggATTAAGCCTGATTTACACTtcaactcaaaaacaaaaa
actagaaaattaataaacgggggggttctaataagaacgggggggtccga
aaaattttcgaaaattaataagcggggggggggacgtctattcgggacct
tagagtaaatgcataaccaggtaggtccataaaagtatcacttgttgtcA
ATACATTAACTGCATGTAGAATATAGTTTTTTGCTTTCCCACTGTGCTTG
TCAGTAAATTACAgtactctctaattcgatttacaaaggggaattggatt
ttcatcgaataaggggaACGACATTGAACTCACTGGCGTCACttcttcat
tttaatttcagagGAAGAGATCTCCAAGCTTCAACAAGAAAGAGACCTGA
AGTTAGAAGCTGCTTCCAAATCATCGCAAGATATTCAACCCGTTGGCTAT
GTGCAACAGAGTGGAACAAGTGTCAACGTTGCTGGGGAATCTAACCATGA
TGATCTCAACGGAGAGGTGTCTTTCTTTTCCTTCCTTTTTTCTTCGCCCT
TGAacattttaaacaataaatattGTTATTTCTAGAGAAACAAACATAAA
CTAAAAACAACTAAAAGACATTCAAAATGCAAAGCGATTAATTGTACAAC
GGCGAAGATCAGGAGGGAACAAGCATCCAGTATTACATACATGTCATCAG
AGATATAATTCTTTAAACATAAAGAGCTGTTTCATAGAAAAGCTCTATAT
AATTAGTAGCGCACACCATCATAAAAAGTTAGTTCTTTAAActtaaaaac
acaaaatataacCTTCTGCACAATTTCTGCAGATTTCACCGGAAATGTTA
CCACTGGATCGCACCAGAGGTGATGGTATGGAGTTCAACAACAACGAccg
agaagaagaagaaatagcGGAAGAActagaagaagatgaagaagatgaag
atgGAGAACGAAGCAACAGTAAAACACCTTCCTCGCAACCGCAACATAAA
AGAAGACATAAAGTAATTAACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00005744-exon-sc0000059-1491911889:684643..684779 | TCONS_00005744-exon-sc0000059-1491911889:684643..684779 | Clytia hemisphaerica | exon |
TCONS_00005744-exon-sc0000059-1510915933:684643..684779 | TCONS_00005744-exon-sc0000059-1510915933:684643..684779 | Clytia hemisphaerica | exon |
TCONS_00005744-exon-sc0000059-1575043694:684643..684779 | TCONS_00005744-exon-sc0000059-1575043694:684643..684779 | Clytia hemisphaerica | exon |
TCONS_00005744-exon-sc0000059-1491911889:685091..685221 | TCONS_00005744-exon-sc0000059-1491911889:685091..685221 | Clytia hemisphaerica | exon |
TCONS_00005744-exon-sc0000059-1510915933:685091..685221 | TCONS_00005744-exon-sc0000059-1510915933:685091..685221 | Clytia hemisphaerica | exon |
TCONS_00005744-exon-sc0000059-1575043694:685091..685221 | TCONS_00005744-exon-sc0000059-1575043694:685091..685221 | Clytia hemisphaerica | exon |
TCONS_00005744-exon-sc0000059-1491911889:685716..685950 | TCONS_00005744-exon-sc0000059-1491911889:685716..685950 | Clytia hemisphaerica | exon |
TCONS_00005744-exon-sc0000059-1510915933:685716..685950 | TCONS_00005744-exon-sc0000059-1510915933:685716..685950 | Clytia hemisphaerica | exon |
TCONS_00005744-exon-sc0000059-1575043694:685716..685950 | TCONS_00005744-exon-sc0000059-1575043694:685716..685950 | Clytia hemisphaerica | exon |
TCONS_00005744-exon-sc0000059-1491911889:687005..687205 | TCONS_00005744-exon-sc0000059-1491911889:687005..687205 | Clytia hemisphaerica | exon |
TCONS_00005744-exon-sc0000059-1510915933:687005..687205 | TCONS_00005744-exon-sc0000059-1510915933:687005..687205 | Clytia hemisphaerica | exon |
TCONS_00005744-exon-sc0000059-1575043694:687005..687205 | TCONS_00005744-exon-sc0000059-1575043694:687005..687205 | Clytia hemisphaerica | exon |
TCONS_00005744-exon-sc0000059-1491911889:691954..692108 | TCONS_00005744-exon-sc0000059-1491911889:691954..692108 | Clytia hemisphaerica | exon |
TCONS_00005744-exon-sc0000059-1510915933:691954..692108 | TCONS_00005744-exon-sc0000059-1510915933:691954..692108 | Clytia hemisphaerica | exon |
TCONS_00005744-exon-sc0000059-1575043694:691954..692108 | TCONS_00005744-exon-sc0000059-1575043694:691954..692108 | Clytia hemisphaerica | exon |
TCONS_00005744-exon-sc0000059-1491911889:692425..692615 | TCONS_00005744-exon-sc0000059-1491911889:692425..692615 | Clytia hemisphaerica | exon |
TCONS_00005744-exon-sc0000059-1510915933:692425..692615 | TCONS_00005744-exon-sc0000059-1510915933:692425..692615 | Clytia hemisphaerica | exon |
TCONS_00005744-exon-sc0000059-1575043694:692425..692615 | TCONS_00005744-exon-sc0000059-1575043694:692425..692615 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000059 | supercontig | sc0000059:684643..692615 + |
Blast
BLAST of TCONS_00005744 vs. Swiss-Prot (Human)
Match: KIF17 (Kinesin-like protein KIF17 OS=Homo sapiens GN=KIF17 PE=2 SV=3) HSP 1 Score: 295.819 bits (756), Expect = 7.306e-91 Identity = 153/249 (61.45%), Postives = 185/249 (74.30%), Query Frame = 2
Query: 2 RSHSIFTIFVETCETGTDGEEHIRAGKLNLVDLAGSERQAKTGAEGSRLKEATKINLSLSALGNVISALVDGKSKHIPYRDSKLTRLLQDSLGGNTKTLMVACISPADNNYDETLSTLRYANRAKNIKNKPKINEDPKDALLRQYQDEITVLKQMLMGEIPMSPEMLLKLGLSGAQAQALSPTKSVGAVEPEEPTPQSTEASEKEAERIKAEYEEKLVQMQKKFEEEQGNKKRLEEEISKLQQERDLKL 748
RSHSIFTI +E G++H+RAGKLNLVDLAGSERQ+KTGA G RLKEATKINLSLSALGNVISALVDG+ KH+PYRDSKLTRLLQDSLGGNTKTLMVAC+SPADNNYDETLSTLRYANRAKNI+NKP+INEDPKDALLR+YQ+EI LK +L + +M + Q P V E P P E E + I+ EYEE+L +++ ++ EQ ++ RLEE+I+ ++ D++L
Sbjct: 209 RSHSIFTISIEMSAVDERGKDHLRAGKLNLVDLAGSERQSKTGATGERLKEATKINLSLSALGNVISALVDGRCKHVPYRDSKLTRLLQDSLGGNTKTLMVACLSPADNNYDETLSTLRYANRAKNIRNKPRINEDPKDALLREYQEEIKKLKAIL------TQQMSPSSLSALLSRQV--PPDPVQVEEKLLPQPVIQHDVEAEKQLIREEYEERLARLKADYKAEQESRARLEEDITAMRNSYDVRL 449
The following BLAST results are available for this feature:
|