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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005965 ID=TCONS_00005965|Name=TCONS_00005965|organism=Clytia hemisphaerica|type=transcript|length=1767bp
ttttgtttctttcttatttatattttgccaacagtttctccatcttattt
gcccgtcctttttttcaaagttttctcacatagcacacacatAACATCTA
AACTTCTCTTGaagatttccaaaactttttgtcagcttttccaaaaatat
tatcccacatgggaatagcttgctTTAccatatttttagattttgtaaat
gagttttgatgaacatagttgcatttttttggtattttatgtgtaaagaa
ggtaagtgtcaagagaaaagtttgctcgctgtttttgatgattttttgaa
atttcgacattaaaaaaaagtcagttttttgaaaataactttcgaactat
tttttcaaacctaatgtatgatcaaaattcaagttagagcatcctctata
cgatgAAAAAAGAATGAACGAAATATAAAAATTCTGAAGCTCAcgatatc
tcgacaaacctgtatactcttttttggtgcacccggtaaaatgaaaaatt
ttcatgaaagaACACGCAGAGAACCAAAGAAGAGCAGCTTTAAAGGATTA
AATTACGAAGTTGAAGGTTGAAGCCGATGTTGTTAATTATAGTGTAAGAG
AATTCAATTTTGACAAAACTTTAtgacaaaaattataaataaatgtatat
attttcataaaaatatctttttatacCTATctgtatttgataaaaaataa
tattaaaaaacaTAAGTATACACAACTCAAAATACAATGATTAAAAGCGT
GCCGTCGTCTTTTGTCAATTGGTAATCATTGATGCCATAAGCATATTCAA
TTTTCCCTTGACCTCTGCAAAGATTAAGTCCAAAGAGAATATATAATATG
TGTCCATGATAATATCAACCCAATGTGAATTTTGGTTGACATTAGTTCTC
AGAGCTGTAAAATATCTGAAGTTTAACGGAGGCGATGAAAATTGTCTTTC
AAAACCTGCACTTACATTCGCAGTTCTACCAATTATGTCAAAGATGAAAT
TCCTGCGTGGAAGAAAGTACCCTGTATTTAAAAATGTTCATTAAGTTATT
TCCTTCTATTTGGTATAGTAGTCTGCATCATGCATAATCTGACTTCTTTT
TCCATGTAGAATAAAGTTCTCCAAGCCATAAGGTTTTGGAGACTTTTAGA
GGAAGTAGTTCGGTTGTAAAATAGAGCTCCAAAACCCAAATGGCCCATTA
AACCACTCTGTATCAACACAAAATGACAATGGCATTCGACAAATAAGATT
AAGAATAGTCGCTCATAAAACCGGCTGCCGTGTTTGTGGCATTCCAGTTG
TCGTTGTGACGTCATAATAGTTTCCGAATTCGCTCGCAAAcattgtgacg
tcatcatacATGACATCATTTCTAACCAATGGGTGTCGCCTTAAACCCGC
CAGGGCGGCAACATCTTTTCGATCAACAAAAACGCTCGTGTTGGACGACA
ACAAATAAGTCGTGTAAACGTGGCGTAATGAAGCGGCGACAAAAATGCCG
AGTTGTATACCGAGGAGGAAAACGAGAATGAGCTCACGAGTCGTGAATGA
TCGGTTAGCGAAAGAATAGTGCGAttgttgtttcttcattatTAAGAAAA
AGGATGTCTATTCCTCAATTCTTTTTAAACGGATTTTGCAATGACTTTAA
GCAACGACCATAAAAAGTGGGGTGTTACAGGATGACAGTCGTTTTTTATA
TTCTTacctaaaatcataaaaagggGTTTGTTAGATTCAAAAGTTATTTC
AATCCAATAcaataaat Run BLAST on NCBI protein sequence of TCONS_00005965-protein >TCONS_00005965-protein ID=TCONS_00005965-protein|Name=TCONS_00005965-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MKKQQSHYSFANRSFTTRELILVFLLGIQLGIFVAASLRHVYTTYLLSSN
TSVFVDRKDVAALAGLRRHPLVRNDVMYDDVTMFASEFGNYYDVTTTTGM
PQTRQPVL Run BLAST on NCBI transcript from alignment at sc0000061:326753..328519 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005965 ID=TCONS_00005965|Name=TCONS_00005965|organism=Clytia hemisphaerica|type=transcript|length=1767bp|location=Sequence derived from alignment at sc0000061:326753..328519 (Clytia hemisphaerica)
atttattgTATTGGATTGAAATAACTTTTGAATCTAACAAACcccttttt
atgattttaggtAAGAATATAAAAAACGACTGTCATCCTGTAACACCCCA
CTTTTTATGGTCGTTGCTTAAAGTCATTGCAAAATCCGTTTAAAAAGAAT
TGAGGAATAGACATCCTTTTTCTTAataatgaagaaacaacaaTCGCACT
ATTCTTTCGCTAACCGATCATTCACGACTCGTGAGCTCATTCTCGTTTTC
CTCCTCGGTATACAACTCGGCATTTTTGTCGCCGCTTCATTACGCCACGT
TTACACGACTTATTTGTTGTCGTCCAACACGAGCGTTTTTGTTGATCGAA
AAGATGTTGCCGCCCTGGCGGGTTTAAGGCGACACCCATTGGTTAGAAAT
GATGTCATgtatgatgacgtcacaatgTTTGCGAGCGAATTCGGAAACTA
TTATGACGTCACAACGACAACTGGAATGCCACAAACACGGCAGCCGGTTT
TATGAGCGACTATTCTTAATCTTATTTGTCGAATGCCATTGTCATTTTGT
GTTGATACAGAGTGGTTTAATGGGCCATTTGGGTTTTGGAGCTCTATTTT
ACAACCGAACTACTTCCTCTAAAAGTCTCCAAAACCTTATGGCTTGGAGA
ACTTTATTCTACATGGAAAAAGAAGTCAGATTATGCATGATGCAGACTAC
TATACCAAATAGAAGGAAATAACTTAATGAACATTTTTAAATACAGGGTA
CTTTCTTCCACGCAGGAATTTCATCTTTGACATAATTGGTAGAACTGCGA
ATGTAAGTGCAGGTTTTGAAAGACAATTTTCATCGCCTCCGTTAAACTTC
AGATATTTTACAGCTCTGAGAACTAATGTCAACCAAAATTCACATTGGGT
TGATATTATCATGGACACATATTATATATTCTCTTTGGACTTAATCTTTG
CAGAGGTCAAGGGAAAATTGAATATGCTTATGGCATCAATGATTACCAAT
TGACAAAAGACGACGGCACGCTTTTAATCATTGTATTTTGAGTTGTGTAT
ACTTAtgttttttaatattattttttatcaaatacagATAGgtataaaaa
gatatttttatgaaaatatatacatttatttataatttttgtcaTAAAGT
TTTGTCAAAATTGAATTCTCTTACACTATAATTAACAACATCGGCTTCAA
CCTTCAACTTCGTAATTTAATCCTTTAAAGCTGCTCTTCTTTGGTTCTCT
GCGTGTtctttcatgaaaatttttcattttaccgggtgcaccaaaaaaga
gtatacaggtttgtcgagatatcgTGAGCTTCAGAATTTTTATATTTCGT
TCATTCTTTTTTcatcgtatagaggatgctctaacttgaattttgatcat
acattaggtttgaaaaaatagttcgaaagttattttcaaaaaactgactt
ttttttaatgtcgaaatttcaaaaaatcatcaaaaacagcgagcaaactt
ttctcttgacacttaccttctttacacataaaataccaaaaaaatgcaac
tatgttcatcaaaactcatttacaaaatctaaaaatatggTAAagcaagc
tattcccatgtgggataatatttttggaaaagctgacaaaaagttttgga
aatcttCAAGAGAAGTTTAGATGTTatgtgtgtgctatgtgagaaaactt
tgaaaaaaaggacgggcaaataagatggagaaactgttggcaaaatataa
ataagaaagaaacaaaa Coding sequence (CDS) from alignment at sc0000061:326753..328519 >TCONS_00005965 ID=TCONS_00005965|Name=TCONS_00005965|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at sc0000061:326753..328519 (Clytia hemisphaerica)
atgaagaaacaacaaTCGCACTATTCTTTCGCTAACCGATCATTCACGAC
TCGTGAGCTCATTCTCGTTTTCCTCCTCGGTATACAACTCGGCATTTTTG
TCGCCGCTTCATTACGCCACGTTTACACGACTTATTTGTTGTCGTCCAAC
ACGAGCGTTTTTGTTGATCGAAAAGATGTTGCCGCCCTGGCGGGTTTAAG
GCGACACCCATTGGTTAGAAATGATGTCATgtatgatgacgtcacaatgT
TTGCGAGCGAATTCGGAAACTATTATGACGTCACAACGACAACTGGAATG
CCACAAACACGGCAGCCGGTTTTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005965-exon-sc0000061-1491911889:326753..328519 | TCONS_00005965-exon-sc0000061-1491911889:326753..328519 | Clytia hemisphaerica | exon |
| TCONS_00005965-exon-sc0000061-1510915933:326753..328519 | TCONS_00005965-exon-sc0000061-1510915933:326753..328519 | Clytia hemisphaerica | exon |
| TCONS_00005965-exon-sc0000061-1575043694:326753..328519 | TCONS_00005965-exon-sc0000061-1575043694:326753..328519 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:326753..328519 . |
Blast
The following BLAST results are available for this feature:
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