TCONS_00005969 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005969
Unique NameTCONS_00005969
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2753

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005969 ID=TCONS_00005969|Name=TCONS_00005969|organism=Clytia hemisphaerica|type=transcript|length=2753bp
tggcgatagatcaatttcataaaatttggcgAAATGCTAATTTTGAGACA
CTTAAAAATTACTATAAAATACACTGAAaagttgttatttttatttttta
cataatattatttttgttaaatttggcgaatggtcggtttttgaaatttt
agcgtggatttaatttggcgaatgttGTTAAAATTCGCCAAagtaaatcc
ccgccaaatttaatccacttaaaAGGTAGTCTTTGCGTTTTCTGTTCTTT
TAAGTTACAGACACGCTCGCTGCAACTATCTATTCCGAAATACACTGTTC
ATTCAAAGACATTGCAGTAGTGGTGCGACTAATATTACTCTGCATCGATG
GATTCTTGTCACCAGTCTCTTTAGATTCGCttcgaatcaaaacaaatttc
ctCGCATAGATACAAAACATAATGACGTAACCAGATACCACACCAGTCAA
CGATGGTAAGAGAGATTTAACACCTTCATTGTTTACCAAGAAATAAGTGA
CCAATCCCAGGCTAGTTATAAAGCACGTGACATACATACTAATCCCAACG
TATTTTGATTCGTTGAAATTTTTAGGGAAATGGCGCGTCTTGAATGTATA
GAATGTTGTTCCGCACATTAAtacaagaacaaaagaaaagttcGCGATAA
ATAAAATACTGTCGTCATGACAATATAACTCAACATGGCTCCTGTCGCTA
GGATACAGATAACCAATAGAAATAACCGAATATCTGGGAACACATAAAAG
TAACTGTATGAAACAGAATGCCAACGATAATGCAACTTGAGATCCAGGGC
TTATCACCTTAGGGCGGACCGGGGTGCTCTTGGCGGCTTTGAATATGCGG
TATATTCGAttagttttcaaaaacaaagggcCGTAGACGAGGGAAAACCC
TTGATACATGACGGTCCGATTTAGAAAGCATAAAATCTTTGTAGGTCTTG
TCATATTGATCAGTGGTACCAAATTCCAAGCTAAAACACCGGTAAGGGTT
AAGATACTTAATTCTCTCGAGGACGCTTTTATAATATGATGGTCTTTAAA
ATATATGAATCCGTAGACAAAAGTAAGCGTTATTAGGCTACTGATGATGG
ATAGAAAATAAACAGTAACTTGTAGACCAAAAGGTATCGACGCCCCTGTC
AGAGGCAACGTCTCGCACACTGATTTCAACGGGTTTGGTCTCTCGTATTC
AATGCATAAAACGCAAGTATTATTCATCGCAACATGCTCTGCTGGACATT
TTTGGCAATTCCAGCATTCACGGGGACATTTAGTATATGGTGCCTTTATC
TCGTTAATCCCGCATTTCGGGCTACAATTAGAATCTAGTTTATGTCTATT
ACGCCATTGGATATGTTCTTTACTAACGGTAAGTTTGCCTGTCCTGAATC
GAGGAAAATTCGTTAGATTCAAAGGAGGTCTCGGTACCAAGTTTTTAGAT
TTCACCCAAGAGCCAATTTTACGATATTCAAAAACACCTTTTGTCGTTTC
TTGATAATTATAGATTGCAATGTTTGAATAAACACGGCGATTATTTTTGA
ACTCGAATACTTGTTTATTGAATAGACTTGGTGCTGTATAAGTTTTAAGT
TTATCAAGCTCGATAACCGTTTGATACCAACCATAATATGAAGTCAAATG
TCTTTCGTTATAACCTCTGTCTATCAAATTATTGAATACGGTTAAAAAAG
CATAGACTGAATTGGCTATCCCGTAAGCATTAGAATGTGTGATATTACCG
aacttattttcaaaaaatatctcaTCATTTTGACATTCTGTTGCGTTCCA
CTTGTGGTAAAGATCTGTATTACAATATCCGAGTTTATAGATTTTATAAA
GATCNGGTAAGGATCTGTATTACAATATCCGAGTTTATAGATTTTATAAA
GATTCGATTTGAAGATTTCTCTGTTATGGAAAAAGTTACTCAAGCTTGGT
AATTCTGCTGGGTAATATGGTTGGAATGTTATAACTCCTTTAGAGACTGC
CTCGTTTCCCTCAACCACTATTTTCTTGGTTCCCCAACTTGACATAGCTA
AAAAAGTAATATCATTTATGTGTTTACTCATTTTCAAACCATTCAAAAAT
TTGATCAATTCAGCTTCTTGTAACATCAGTATAAAGACTTTTAATAAAGG
TGTATTCTCAACTACAAAGTCTAGAAAGTTCTGATAAGTTTCTATGGTCG
TTCCAGTTTTAAATCGAATCATATCATGTACACATACTCCTCGCAACATA
GCGCTTGTTTTAATGCTATGTGCAGCCGACCACCCGTACTTATTTTCCTG
ATAAAAAATCCCGACGTAATTCCAATCCATTTCAGCGACAAAATCAATAA
CAGCATCTGCAGTGTCGACAATACTCGGTACGATCCAGTGTTGAACATCA
AACATGTGTCTCCGATCAATACTTAATCCAATCTCGTTAAGCGACAACAT
CGGTACATAATACAAACTCATAATGGGGACCACGAGCTGAGCGACTTGGA
AGTCTTCCGGCCCAATGATCCCAGCGATATGGTCAAAACGAGTGATCGCT
AAAATATCACGTTGTATCGATGATTCTCTACATAAATCAAATATGGCGTA
CCCCAAAgtcaaattctttttcaacaaataGTTAGAGTTGATTTCATCAA
TGGTTTGAGTCATGGTGATGATTGGGAGGATACCAAATACTGGTCGTGGA
ATACTACATTCTGGCTTTCTAGGGATGGAACCATTTCCTTTGAAGAGCCC
AAT
Run BLAST on NCBI

protein sequence of TCONS_00005969-protein

>TCONS_00005969-protein ID=TCONS_00005969-protein|Name=TCONS_00005969-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
IGLFKGNGSIPRKPECSIPRPVFGILPIITMTQTIDEINSNYLLKKNLTL
GYAIFDLCRESSIQRDILAITRFDHIAGIIGPEDFQVAQLVVPIMSLYYV
PMLSLNEIGLSIDRRHMFDVQHWIVPSIVDTADAVIDFVAEMDWNYVGIF
YQENKYGWSAAHSIKTSAMLRGVCVHDMIRFKTGTTIETYQNFLDFVVEN
TPLLKVFILMLQEAELIKFLNGLKMSKHINDITFLAMSSWGTKKIVVEGN
EAVSKGVITFQPYYPAELPSLSNFFHNREIFKSNLYKIYKLGYCNTDPYX
IFIKSINSDIVIQIFTTSGTQQNVKMMRYFLKISSVISHILMLTG
Run BLAST on NCBI

transcript from alignment at sc0000061:427712..430464

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005969 ID=TCONS_00005969|Name=TCONS_00005969|organism=Clytia hemisphaerica|type=transcript|length=2753bp|location=Sequence derived from alignment at sc0000061:427712..430464 (Clytia hemisphaerica)
ATTGGGCTCTTCAAAGGAAATGGTTCCATCCCTAGAAAGCCAGAATGTAG
TATTCCACGACCAGTATTTGGTATCCTCCCAATCATCACCATGACTCAAA
CCATTGATGAAATCAACTCTAACtatttgttgaaaaagaatttgacTTTG
GGGTACGCCATATTTGATTTATGTAGAGAATCATCGATACAACGTGATAT
TTTAGCGATCACTCGTTTTGACCATATCGCTGGGATCATTGGGCCGGAAG
ACTTCCAAGTCGCTCAGCTCGTGGTCCCCATTATGAGTTTGTATTATGTA
CCGATGTTGTCGCTTAACGAGATTGGATTAAGTATTGATCGGAGACACAT
GTTTGATGTTCAACACTGGATCGTACCGAGTATTGTCGACACTGCAGATG
CTGTTATTGATTTTGTCGCTGAAATGGATTGGAATTACGTCGGGATTTTT
TATCAGGAAAATAAGTACGGGTGGTCGGCTGCACATAGCATTAAAACAAG
CGCTATGTTGCGAGGAGTATGTGTACATGATATGATTCGATTTAAAACTG
GAACGACCATAGAAACTTATCAGAACTTTCTAGACTTTGTAGTTGAGAAT
ACACCTTTATTAAAAGTCTTTATACTGATGTTACAAGAAGCTGAATTGAT
CAAATTTTTGAATGGTTTGAAAATGAGTAAACACATAAATGATATTACTT
TTTTAGCTATGTCAAGTTGGGGAACCAAGAAAATAGTGGTTGAGGGAAAC
GAGGCAGTCTCTAAAGGAGTTATAACATTCCAACCATATTACCCAGCAGA
ATTACCAAGCTTGAGTAACTTTTTCCATAACAGAGAAATCTTCAAATCGA
ATCTTTATAAAATCTATAAACTCGGATATTGTAATACAGATCCTTACCNG
ATCTTTATAAAATCTATAAACTCGGATATTGTAATACAGATCTTTACCAC
AAGTGGAACGCAACAGAATGTCAAAATGAtgagatattttttgaaaataa
gttCGGTAATATCACACATTCTAATGCTTACGGGATAGCCAATTCAGTCT
ATGCTTTTTTAACCGTATTCAATAATTTGATAGACAGAGGTTATAACGAA
AGACATTTGACTTCATATTATGGTTGGTATCAAACGGTTATCGAGCTTGA
TAAACTTAAAACTTATACAGCACCAAGTCTATTCAATAAACAAGTATTCG
AGTTCAAAAATAATCGCCGTGTTTATTCAAACATTGCAATCTATAATTAT
CAAGAAACGACAAAAGGTGTTTTTGAATATCGTAAAATTGGCTCTTGGGT
GAAATCTAAAAACTTGGTACCGAGACCTCCTTTGAATCTAACGAATTTTC
CTCGATTCAGGACAGGCAAACTTACCGTTAGTAAAGAACATATCCAATGG
CGTAATAGACATAAACTAGATTCTAATTGTAGCCCGAAATGCGGGATTAA
CGAGATAAAGGCACCATATACTAAATGTCCCCGTGAATGCTGGAATTGCC
AAAAATGTCCAGCAGAGCATGTTGCGATGAATAATACTTGCGTTTTATGC
ATTGAATACGAGAGACCAAACCCGTTGAAATCAGTGTGCGAGACGTTGCC
TCTGACAGGGGCGTCGATACCTTTTGGTCTACAAGTTACTGTTTATTTTC
TATCCATCATCAGTAGCCTAATAACGCTTACTTTTGTCTACGGATTCATA
TATTTTAAAGACCATCATATTATAAAAGCGTCCTCGAGAGAATTAAGTAT
CTTAACCCTTACCGGTGTTTTAGCTTGGAATTTGGTACCACTGATCAATA
TGACAAGACCTACAAAGATTTTATGCTTTCTAAATCGGACCGTCATGTAT
CAAGGGTTTTCCCTCGTCTACGgccctttgtttttgaaaactaaTCGAAT
ATACCGCATATTCAAAGCCGCCAAGAGCACCCCGGTCCGCCCTAAGGTGA
TAAGCCCTGGATCTCAAGTTGCATTATCGTTGGCATTCTGTTTCATACAG
TTACTTTTATGTGTTCCCAGATATTCGGTTATTTCTATTGGTTATCTGTA
TCCTAGCGACAGGAGCCATGTTGAGTTATATTGTCATGACGACAGTATTT
TATTTATCGCgaacttttcttttgttcttgtaTTAATGTGCGGAACAACA
TTCTATACATTCAAGACGCGCCATTTCCCTAAAAATTTCAACGAATCAAA
ATACGTTGGGATTAGTATGTATGTCACGTGCTTTATAACTAGCCTGGGAT
TGGTCACTTATTTCTTGGTAAACAATGAAGGTGTTAAATCTCTCTTACCA
TCGTTGACTGGTGTGGTATCTGGTTACGTCATTATGTTTTGTATCTATGC
GaggaaatttgttttgattcgaaGCGAATCTAAAGAGACTGGTGACAAGA
ATCCATCGATGCAGAGTAATATTAGTCGCACCACTACTGCAATGTCTTTG
AATGAACAGTGTATTTCGGAATAGATAGTTGCAGCGAGCGTGTCTGTAAC
TTAAAAGAACAGAAAACGCAAAGACTACCTtttaagtggattaaatttgg
cggggatttactTTGGCGAATTTTAACaacattcgccaaattaaatccac
gctaaaatttcaaaaaccgaccattcgccaaatttaacaaaaataatatt
atgtaaaaaataaaaataacaacttTTCAGTGTATTTTATAGTAATTTTT
AAGTGTCTCAAAATTAGCATTTcgccaaattttatgaaattgatctatcg
cca

Coding sequence (CDS) from alignment at sc0000061:427712..430464

>TCONS_00005969 ID=TCONS_00005969|Name=TCONS_00005969|organism=Clytia hemisphaerica|type=CDS|length=1038bp|location=Sequence derived from alignment at sc0000061:427712..430464 (Clytia hemisphaerica)
ATTGGGCTCTTCAAAGGAAATGGTTCCATCCCTAGAAAGCCAGAATGTAG
TATTCCACGACCAGTATTTGGTATCCTCCCAATCATCACCATGACTCAAA
CCATTGATGAAATCAACTCTAACtatttgttgaaaaagaatttgacTTTG
GGGTACGCCATATTTGATTTATGTAGAGAATCATCGATACAACGTGATAT
TTTAGCGATCACTCGTTTTGACCATATCGCTGGGATCATTGGGCCGGAAG
ACTTCCAAGTCGCTCAGCTCGTGGTCCCCATTATGAGTTTGTATTATGTA
CCGATGTTGTCGCTTAACGAGATTGGATTAAGTATTGATCGGAGACACAT
GTTTGATGTTCAACACTGGATCGTACCGAGTATTGTCGACACTGCAGATG
CTGTTATTGATTTTGTCGCTGAAATGGATTGGAATTACGTCGGGATTTTT
TATCAGGAAAATAAGTACGGGTGGTCGGCTGCACATAGCATTAAAACAAG
CGCTATGTTGCGAGGAGTATGTGTACATGATATGATTCGATTTAAAACTG
GAACGACCATAGAAACTTATCAGAACTTTCTAGACTTTGTAGTTGAGAAT
ACACCTTTATTAAAAGTCTTTATACTGATGTTACAAGAAGCTGAATTGAT
CAAATTTTTGAATGGTTTGAAAATGAGTAAACACATAAATGATATTACTT
TTTTAGCTATGTCAAGTTGGGGAACCAAGAAAATAGTGGTTGAGGGAAAC
GAGGCAGTCTCTAAAGGAGTTATAACATTCCAACCATATTACCCAGCAGA
ATTACCAAGCTTGAGTAACTTTTTCCATAACAGAGAAATCTTCAAATCGA
ATCTTTATAAAATCTATAAACTCGGATATTGTAATACAGATCCTTACCNG
ATCTTTATAAAATCTATAAACTCGGATATTGTAATACAGATCTTTACCAC
AAGTGGAACGCAACAGAATGTCAAAATGAtgagatattttttgaaaataa
gttCGGTAATATCACACATTCTAATGCTTACGGGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003402XLOC_003402Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005969-exon-sc0000061-1491911889:427712..430464TCONS_00005969-exon-sc0000061-1491911889:427712..430464Clytia hemisphaericaexon
TCONS_00005969-exon-sc0000061-1510915933:427712..430464TCONS_00005969-exon-sc0000061-1510915933:427712..430464Clytia hemisphaericaexon
TCONS_00005969-exon-sc0000061-1575043694:427712..430464TCONS_00005969-exon-sc0000061-1575043694:427712..430464Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005969-proteinTCONS_00005969-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:427712..430464 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.167348	0.299183	0.22106	0.139032	0.037613	0.0148611	0.143435	0.218208	0.0705104	0.145564	0.211932	0.232193	0.816184	0.423807	0.324671	0.246445	0.167503	0.429213	2.38675	2.07872	0.471921	0.591908	0.87944	1.03213	1.16788	1.46992	0.133856	0.0816312	0.185743	0.331175
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000337GPCR_3
IPR001828ANF_lig-bd_rcpt
IPR028082Peripla_BP_I
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
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BLAST of TCONS_00005969 vs. Swiss-Prot (Human)
Match: GRM8 (Metabotropic glutamate receptor 8 OS=Homo sapiens GN=GRM8 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 1.693e-38
Identity = 109/384 (28.39%), Postives = 170/384 (44.27%), Query Frame = -3 
Query:  433 FKNNRRVYSNIAIYNYQETTKGVFEYRKIGSWVKSKNLVPRPPLNLTNFPRFRTGKLTVSKEHIQWRNRHKLD--SNCSPKCGINEIKAPYTKCPRECWNCQKCPAEHVAMNN-TCVLCIEYERPNPLKSVCETLPLTGASIPFGLQVTVYFLSIISSLITLTFVYGFIYFKDHHIIKASSRELSILTLTGVLAWNLVPLINMTRPTKILCFLNRTVMYQGFSLVYGPLFLKTNRIYRIFKAAKSTPVRPKVISPGSQVALSLAFCFIQLL------LCVPRYSVISIGYLYPSD--RSHVELYCHDDSILFIANFSFVLVLMCGTTFYTFKTRHFPKNFNESKYVGISMYVTCFITSLGLVTYFLVNNEGVKSLLPSLTGVVS 1551
            F  N        I+ YQ T K   EY+ IG W                     T +L +  E +QW +R      S CS  C   E K      P  CW+C++C   +  ++  +C LC   +RPN  ++ C+ +P+          V   F++I+  + T   +  F+ + D  I++AS RELS + LTG+     +  + +  P  I+C   R  +  G    Y  L  KTNRI+RIF+  K +   PK ISP SQ+ ++ +   +QLL      +  P + +I  G     D  ++   L C    +  I +  + ++LM   T Y  KTR  P+ FNE+K +G +MY TC I    +  +F       K  + + T  VS
Sbjct:  461 FNENGDAPGRYDIFQYQITNKST-EYKVIGHW---------------------TNQLHLKVEDMQWAHREHTHPASVCSLPCKPGERKKTVKGVPC-CWHCERCEGYNYQVDELSCELCPLDQRPNMNRTGCQLIPIIKLEWHSPWAVVPVFVAILGIIATTFVIVTFVRYNDTPIVRASGRELSYVLLTGIFLCYSITFLMIAAPDTIICSFRRVFLGLGMCFSYAALLTKTNRIHRIFEQGKKSVTAPKFISPASQLVITFSLISVQLLGVFVWFVVDPPHIIIDYGEQRTLDPEKARGVLKCDISDLSLICSLGYSILLMVTCTVYAIKTRGVPETFNEAKPIGFTMYTTCIIWLAFIPIFFGTAQSAEKMYIQTTTLTVS 821

HSP 2 Score: 93.9745 bits (232), Expect = 1.883e-19
Identity = 72/303 (23.76%), Postives = 123/303 (40.59%), Query Frame = -1 
Query: 1914 GLFKGNGSIPRKPECSIPRPVFGILPIITMTQTIDEINSNYLLKKNLTLGYAIFDLCRESS-------------IQRDILAI----------TRFDHIAGIIGPEDFQVAQLVVPIMSLYYVPMLSLNEIGLSIDRRHMFDVQHWIVPSIVDTADAVIDFVAEMDWNYVGIFYQENKYGWSAAHSI-KTSAMLRGVCVHDMIRFKTGTTIETYQNFLDFVVENTPLLKVFILMLQEAELIKFLNGLKMSKHINDITFLAMSSWGTKKIVVEGNEAVSKGVITFQPYYPAELPSLSNFFHNREI 2750
            GLF  +    R   C   +   GI  +  M   ID+IN +  L  N+TLG  I D C   +             I++D   +          T+ D I+G+IG     V+ +V  I+ L+ +P +S       +     +D    +VP     A A++D V  + WNYV     E  YG S   +  + S  + GVC+    +         ++  +  ++E TP  +  I+   E ++ + L   K         ++   SWG+K   V   E +++G +T  P   A +     +F +R +
Sbjct:   50 GLFPVHAKGERGVPCGELKKEKGIHRLEAMLYAIDQINKDPDLLSNITLGVRILDTCSRDTYALEQSLTFVQALIEKDASDVKCANGDPPIFTKPDKISGVIGAAASSVSIMVANILRLFKIPQISYASTAPELSDNTRYDFFSRVVPPDSYQAQAMVDIVTALGWNYVSTLASEGNYGESGVEAFTQISREIGGVCIAQSQKIPREPRPGEFEKIIKRLLE-TPNARAVIMFANEDDIRRILEAAKKLNQSGHFLWIGSDSWGSKIAPVYQQEEIAEGAVTILPKR-ASIDGFDRYFRSRTL 350
The following BLAST results are available for this feature:
BLAST of TCONS_00005969 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GRM81.693e-3828.39Metabotropic glutamate receptor 8 OS=Homo sapiens ... [more]
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