TCONS_00006070 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006070
Unique NameTCONS_00006070
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1509

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006070 ID=TCONS_00006070|Name=TCONS_00006070|organism=Clytia hemisphaerica|type=transcript|length=1509bp
CAAACACCGGAAATGAATGTGGAACTACCCGATACTGCGGATACACCGGA
CTCCAGAACAAACATTCCGCAAAGTCACGGCAAGACAATCGCCAATAAAC
GAAAACATATCCaCCACAAACCAGAAGCCACCAAAAATGCAGAAGCAGCG
AAAAAACAAGATATGTCATTCAATGATGAGATGCCAGGACAAGAAATGAA
CGAGGGACCAGTTGGTAAAGTCCAAAATGCTGCTGGCGTCGAAGGTTTGG
GCGGTGAGATGAATGGTATCCCAACCGGTATGGGCGCAGGGGCGGAACCA
TTGGGCgcatttgaaaatgaagacacACCACCTGGAACAGAAACACAACC
TCAAAGTTTGGGCGAAGACCAACCCAATGGACTTTCGGAATCAAACCTTG
GTGAACAAGGAGGAGCTGGAGAAATGACGAACGAagcttcagtgaaaatg
aaagcacCCGCAATTTCTATGTCTCACTCATTAGACGATCTCGATAATTC
AGTCAATATCCAAGGCGATGGAGAAATCGGAAAATATGTTCGTAACTCCC
GACAAGGAGGTATGGGAACAGGTAGCGAGAGTATGATTGGTTTGGAAGCG
AAAGACCCTCCTTTCACAGGACATGGCCCTGAGGATGGTGAAGGAAGACG
AGACTCCATCAAGAAGACATCTAGTTAAACAAAAGCCCAAACGCAAGAAG
AATTCCtggaaaaaaccttttaaacAATTACAAAAGAAACAACAATAAGA
CACGTTTTACACCAAGGGTTTTTATAACCTCAACAGTAAACTTATATTCA
ATTTTAGCTGACTAATTTCGCTTGTATAATGCAATAGatctttaactttt
tgttaattttttgtctgaAAGATAACACATTTCTTCCTATGGAGGAACTA
TTACACACCGTAAATTTATATAATGTCGAAAACTCCTACCAGTTCCGTCA
CTCTTCCTTGGACTTGGAGAGTTTATTTTTTGATTCTGCTTCACACATTA
TCTTCATTCCTTCTCAAAGTGATACTTCGGCAAGTTGAAATGTTAGAAGC
TGTGTTTCGATCTTTTGTTCCACCTTTAAAAAGCCTCCAGACTTTCTTGT
TGCATAGATACAAAATGCAAACGAAAATTCCCTTTAAGCTTCTCACCAAG
ACAAacagaaatgaaaaaatcaaattcactgTCATCAATTCTTTACCTGG
TATTTGTACATAGCCAATGATATCAATCAAACCCAACCCAATAATCAACT
TTAAAGCAATTCTCACTAAGTCAGCATTGGCTTGATCGGACTGtaaagtt
tttcttgtttttttcttaGCCAAGTGTATTTTGAGCAGAGTTTTGGCTAA
GGCCAGAATGGATATCAAATGCATGACAACCATTGGAGTGATAACAGACC
ACACCCTTGTGGGGGTATGTGTGACCCAGCACATTTTATCATAACCAACG
TTGACATTGCCAGCCTCGTTCAAAATGACTGCAGGGAGTACGAAAAACAA
AGGTAAAAT
Run BLAST on NCBI

transcript from alignment at sc0000062:430112..436231-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006070 ID=TCONS_00006070|Name=TCONS_00006070|organism=Clytia hemisphaerica|type=transcript|length=6120bp|location=Sequence derived from alignment at sc0000062:430112..436231- (Clytia hemisphaerica)
CAAACACCGGAAATGAATGTGGAACTACCCGATACTGCGGATACACCGGA
CTCCAGAACAAACATTCCGCAAAGTAAGATTCAGACTTTATTCCTGAAAC
AGAAAAATGTGAACAATAGACTGCAAACACATGTAACTGAGAACAATAAT
AAACGAACAGAAATCTTCAAAAGAATGCGAACACCCGATACCGTAGATAC
ACCGACCATGGACGTTGATACCCCGAACACACCGGACACTCCCGAATTCG
ACGTAAATGTAAACTCGACAAAGAATACTCCAGACAGTACCGGATTTCAA
TTTTCCGGTGATGATGACCCAAGTTATACGGAAGTTGATAACGGAAAATT
AAGACCAATCCATTTTATAGCGAACCCGTTTTCTAACGTAACTGAAACGA
CAGGAGCGGTTTCCGTGCGCTGGAAACCGTACAATAAGAACACGTCGCGT
ATCACTATTCATGGTGCACGGATGCACGATGAAATTGAAGCCAAAACACA
AGAAGAAGATGCCGAGAATAAAAATATGATAGGAGAAGAAACTCAAATCT
CCCTTGATAAAGAAAATGCTAAACTTTTCAAAAACTCTACTTTTGATAAT
ACAATGTTGGATTATTTTTTCAACCAATATAACAAAAAGTCCTTTTTACC
TAAGCTTCTCTCAAAGAACAAATCTACTACTTCTAAATCTACGCTATTTT
TGAATATGAAGTTTTAATATTTCTAACAAAATATCAATATATCTTTTTGG
TAAGCTTTTTAAATTTTTAAATTTTATCGGACATAAGCTCTCTGCTACGT
CGACCAGTTATAGATACTTCGGCCTTGATTTACTACAGTATTAACAAGTT
TACGTAACATCTTTACTTTAACATTGATTTAATATTTAGGAGTTCACGTA
ACACATACAAAGATACGTTAAAATACCTTAAAATGCGCGTTATTCAAATC
TTTAAAATCATTTTGATCCCATTATTAATTAGACTAGCAAACTAGTCTGT
TAATTAATCATGTCAGAGGGTGGGAACATAAAGGCGGCGGGCGTTTGCTA
GAATAGGAGCTGCGTAGGAGAGCGAACAAAAGTTGGTGAGAGGCTGCTGA
TTAAGCTTTCAGCCCTTGCCGCCGACAAAATTTCTTCTTACGCTTACCTA
ACTCCTACGCTCACTTTTCCCACGTGATACCGTTCCAGCCCGACTGGCGT
GCCAGTCTAATTATTAATATGCTGGTCCACTCTCTTTTTTCAGGTCACGG
CAAGACAATCGCCAATAAACGAAAACATATCCGTAAGTTAGTACCCATTC
CCAATTTTTCACCATTTGAAAACATTTTGGTATTTCACAACCATTCAGGA
TATCAATTTTTCTGATTCTTTAAAAAAATAAAAGTAAATTTTCCCACTAT
TTCACTTTATCTTGAGTTATAAAGCAAAAAAGTTTTGTTTTTTACCAAAG
CTGAGGCTACAGGCTGGTGTTTTTAGGCGATTTGAACTGATTTTTTTGAA
GCCACTTTTGTAATTTTTTAAGCGACATTTTTCTAGCGTTATAGTGTACT
TACTGATAGCAGAAAAATTTGACGTGCTACATTTTACAATTTTTCATGCG
TTTTTACAACGCAATGTGAATGGCATTGCAGCCTGTAAAATCGTATAAGT
GTAGTCTTATTCTTATAGTATCCTTATCATTTTATTTTGTAGACCACAAA
CCAGAAGCCACCAAAAATGCAGAAGCAGCGAAAAAACAAGGTACACTAAA
TTCTTATGTTGTTAATGTTAATATACTCAACCTCTTTATAATGAATTGCT
TTAAGATTTATATCTGTTGGTGCTTTTAAGACTTATCTGTTCTTCATCTG
TTGGGAGTATTTTTTAATTTCAAGAAATATTCGATTCCCAACTATCTTTC
CTTTGTATCCATGAATTTCTATTACTGTAAGCTTCCCTATTCTTAACAGT
CAAGATTACGTCATTCACAAACAGGATGAACTGTTTTAGGGAACATAAGC
TTCCATCCAAATTCTTTCCAAACACTGTTTCAAATAGGATAAATGTCTTG
TGACTTATGTATATCATGATATAATTTTTCTTGTGGTAATGATTATCTGT
TTATTACTTTCTCTAGATATGTCATTCAATGATGAGATGCCAGGACAAGA
AATGAACGAGGGACCAGTTGGTGAGTTAGTGAAGATTATATATAACAATG
ATGCTGGCTCGTTTTGGACCTTCTATTACATTACTACACTCATTGAGTTT
AAAGGGGTAGAAAGTCTTTCACAAGCGAGAAAAAGTGAAGTCTTAAGATC
AACGCTGCATTTAGAATGAGGGATTGAATCTAGTGCTTTTTTGTTTTCAT
TCAAGCACGCATTTTTTGAAATTTGGCGATAAATCCGGCATTTCTGTCAT
CCAAGAGTTTCGCATCCATTGCGGCTTAAAACTCAATTACGCCTGAGAAT
GTTTTATTAAGGTTGACATGTTTTGGACATGTTTTTCCATTCTTAATTTA
AGTTATCATATAGATTTTTGATTAATTACTTTCTAGGTAAAGTCCAAAAT
GCTGCTGGCGTCGAAGGTTTGGGCGGTGAGATGAATGGTATCCCAACCGG
TATGGGCGCAGGGGCGGAACCATTGGGCGCATTTGAAAATGAAGACACAC
CACCTGGAACAGAAACACAACCTCAAAGTTTGGGCGAAGACCAACGTACG
TTATTTTATTTAACCTTGATAAGATATACTTTCTAACTCTATGGCATGGG
GAACAGGGGGGTCGATAGTAAAATCTCAGACATAATGACGTTTACTACGG
TGGTGGTGTGACGAGAAATAGAAAAAAACTTTTACTACCCAGGGTAGTTA
AATACTAAAATGGGTGGTATCTATGGGTTAAATGTTGAAAAAATTTACTA
CCTGGGTAGTTAAAACTGGTAAAATTAGCAAATTTTAGCTATTTTTGTAA
TTCTTTTAATTTTTTGGATGGCTTTACTGAAAAAATCTTCTGTTGGAAAG
TTGTTTGCTGCAAACCAAAAATTCTCGAAATTTTTTGTCAATATAAAAAA
GACTTTAATTCTATGGGCAAAACATTAATTTTTGCATTAAGTGAAAAATG
TGTCACAGAATCATTTTTTAGCTTTTTTTGTAAAATCAAGCCGAAAAGCA
ACCGAAAAATAGGTGGTCTCCATGACAAATTGTCCCGAAAACTTTTACTA
CCAGGGTAGTAAAATACCTCTTCCAAGAGTCTGGGTGGTGGTATGTAAAA
ATTCATAAAAATCCTTTTACTACTCATATATGTCTGAGATTTTACTATCG
ACCACCCCCCCTGTGAGGGATATTATTGAAATTGAAAAGTCAAAACAAAG
AAAAGCCAAGGTAGAGTTTAAAATTTATAACAGAGTGTGTTTCTTTGAGC
CATAACCTTATAAGGAAATGAATTTTTGCCCCCCCCCCCCTACGCCTCTT
AAGATCCACCATTTCAATAATTCACGGTAAAGAGATGAAATAAAAATAGA
TTTTCACCTTCAATTCGCCCGATAGTCACTATAGTCATTTGTAGAATTAT
CCTTATTGTGAATCACACTCTCATTTTATATTCAGCCAATGGACTTTCGG
AATCAAACCTTGGTGAACAAGGAGGAGCTGGAGAAATGACGAACGAAGCT
TCAGTGAAAATGAAAGCACCCGCAATTTCTATGTCTCACTCATTAGACGA
TCTCGATAATTCAGTCAATATCCAAGGCGATGGAGAAATCGGTGAGTACT
TGCTGCCATTGACTTTTGATCTGTACAAACCAACATACCCTCTTATTGGG
ATGATGAAATGATCAAGGGAAAAGCTTTATAAGATTACAAGCAAGTGGAA
TAATTTTCTGTTTTGAACACTATAAATTTAAACAATGTTCACTAGTTTCC
AAACTTGTTAAGACCTAGGTAATCTTGATATCCAGGCTGTATACTTTTTT
TTACTTTTTTTAATGTTTCTAGTTTACCGCCTCGTCTTCCTTAAAGCAAG
CTATATTCCAATCAGAAGGTTATGCATAAATTAAAAATCAGCCTACACTG
TGTTCGCCAGCATCTAGGAAACATTTAAGTAAGAAAATAAACTACAGCTT
TGATAACCAGGCTAGGATCTCAGGAATAAAATCTATTTACTCTGAATATA
CGAATTAATATTTCCTTTCTTTCCCTTTAGGAAAATATGTTCGTAACTCC
CGACAAGGAGGTATGGGAACAGGTAGCGAGAGTATGATTGGTTTGGAAGC
GAAAGACCCTCCTTTCACAGGACATGGCCCTGAGGATGGTGAGTAAGTAA
CCTCTCTTTGTTTTTGTTTATCATAGTTTGGTAAATCAATTTTGAACGTC
AACATCGATGGCAAAATTGCTTAAATTCCTTATTTTGTCCACATGACACC
GAAATACCGTCATTTTTTCTTCAAACGCCGAACCGCCGACAGAAGAAAGG
GCCAATACCGTCACATCGTAAAACCTGTACAAAGTCAATGTCCCCTTCAT
AAGCTCTTTTTATACCCTTTTGATAAACCCGCTGGCAGCTAAATTAAGCA
ACTAGAAGTTCGAATTTAATATTTTTGCAGATGCTGAGCCTGACCTTTCA
TGTCAAAAAAGTCTCGAAAACACTGAAAACACTTTGTCCGAAACACTTTT
TCTGAACCTTTCATGCTTTTTTGGGGTGTTGTTGGCAAAAATCATTTCCC
AGAAACACCTTACCTCTCGAGGTGGTGTGTTTTCAGCATTTCCTGTGTTC
CTGGGATTTTCATAAATCAACTCTCAATTTTCTCCATAAAATCCAAGCCA
AANTCTCGAGGTGGTGTGTTTTCAGCATTTCCTGTGTTCCTGGGATTTTC
CTAAATCAACTCTCAATTTTCTCTATAAAATCCAAGCCAAAATGCATTAC
CTGAAACACCGGCAAGTTTCTGAACCATTCAGTGTTTCTCTGGTGTTCAA
GGTGTTTTTCAAGACGATTTTGAAGCTCTTGCCGTGTCCTTTCGGGACCA
ATCAGATAAAAATCGGGTTTAAAATCGGGTTAGAAATCGGGAAAAAATCG
GGGAAAATAGCCAGTTGGGACTTTTTTTAACAGTCGGCTTCAACAGGACA
TTCGGTGTTTCTAAAAACTTTTAAGACTGAACCATTCGTGTTCAAAAGTG
TTTTCTGCAAACCGGGTAAGCAGTGTTTTTTTAAAGACATGAAAGGTTCA
GGCTCGCTATAATATAATATTTTCTAAATTTCTTTCAATATTTCCTTCTC
AGAGGAAGACGAGACTCCATCAAGAAGACATCTAGTTAAACAAAAGCCCA
AACGCAAGAAGAATTCCTGGAAAAAACCTTTTAAACAATTACAAAAGAAA
CAACAATAAGACACGTTTTACACCAAGGGTTTTTATAACCTCAACAGTAA
ACTTATATTCAATTTTAGCTGACTAATTTCGCTTGTATAATGCAATAGAT
CTTTAACTTTTTGTTAATTTTTTGTCTGAAAGATAACACATTTCTTCCTA
TGGAGGAACTATTACACACCGTAAATTTATATAATGTCGAAAACTCCTAC
CAGTTCCGTCACTCTTCCTTGGACTTGGAGAGTTTATTTTTTGATTCTGC
TTCACACATTATCTTCATTCCTTCTCAAAGTGATACTTCGGCAAGTTGAA
ATGTTAGAAGCTGTGTTTCGATCTTTTGTTCCACCTTTAAAAAGCCTCCA
GACTTTCTTGTTGCATAGATACAAAATGCAAACGAAAATTCCCTTTAAGC
TTCTCACCAAGACAAACAGAAATGAAAAAATCAAATTCACTGTCATCAAT
TCTTTACCTGGTATTTGTACATAGCCAATGATATCAATCAAACCCAACCC
AATAATCAACTTTAAAGCAATTCTCACTAAGTCAGCATTGGCTTGATCGG
ACTGTAAAGTTTTTCTTGTTTTTTTCTTAGCCAAGTGTATTTTGAGCAGA
GTTTTGGCTAAGGCCAGAATGGATATCAAATGCATGACAACCATTGGAGT
GATAACAGACCACACCCTTGTGGGGGTATGTGTGACCCAGCACATTTTAT
CATAACCAACGTTGACATTGCCAGCCTCGTTCAAAATGACTGCAGGGAGT
ACGAAAAACAAAGGTAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003453XLOC_003453Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006070-exon-sc0000062-1575043694:436159..436231TCONS_00006070-exon-sc0000062-1575043694:436159..436231Clytia hemisphaericaexon
TCONS_00006070-exon-sc0000062-1575043694:434950..434988TCONS_00006070-exon-sc0000062-1575043694:434950..434988Clytia hemisphaericaexon
TCONS_00006070-exon-sc0000062-1575043694:434492..434539TCONS_00006070-exon-sc0000062-1575043694:434492..434539Clytia hemisphaericaexon
TCONS_00006070-exon-sc0000062-1575043694:434062..434115TCONS_00006070-exon-sc0000062-1575043694:434062..434115Clytia hemisphaericaexon
TCONS_00006070-exon-sc0000062-1575043694:433537..433695TCONS_00006070-exon-sc0000062-1575043694:433537..433695Clytia hemisphaericaexon
TCONS_00006070-exon-sc0000062-1575043694:432491..432646TCONS_00006070-exon-sc0000062-1575043694:432491..432646Clytia hemisphaericaexon
TCONS_00006070-exon-sc0000062-1575043694:431940..432051TCONS_00006070-exon-sc0000062-1575043694:431940..432051Clytia hemisphaericaexon
TCONS_00006070-exon-sc0000062-1575043694:430112..430979TCONS_00006070-exon-sc0000062-1575043694:430112..430979Clytia hemisphaericaexon
TCONS_00006070-exon-sc0000062-1510915933:436159..436231TCONS_00006070-exon-sc0000062-1510915933:436159..436231Clytia hemisphaericaexon
TCONS_00006070-exon-sc0000062-1510915933:434950..434988TCONS_00006070-exon-sc0000062-1510915933:434950..434988Clytia hemisphaericaexon
TCONS_00006070-exon-sc0000062-1510915933:434492..434539TCONS_00006070-exon-sc0000062-1510915933:434492..434539Clytia hemisphaericaexon
TCONS_00006070-exon-sc0000062-1510915933:434062..434115TCONS_00006070-exon-sc0000062-1510915933:434062..434115Clytia hemisphaericaexon
TCONS_00006070-exon-sc0000062-1510915933:433537..433695TCONS_00006070-exon-sc0000062-1510915933:433537..433695Clytia hemisphaericaexon
TCONS_00006070-exon-sc0000062-1510915933:432491..432646TCONS_00006070-exon-sc0000062-1510915933:432491..432646Clytia hemisphaericaexon
TCONS_00006070-exon-sc0000062-1510915933:431940..432051TCONS_00006070-exon-sc0000062-1510915933:431940..432051Clytia hemisphaericaexon
TCONS_00006070-exon-sc0000062-1510915933:430112..430979TCONS_00006070-exon-sc0000062-1510915933:430112..430979Clytia hemisphaericaexon
TCONS_00006070-exon-sc0000062-1491911889:436159..436231TCONS_00006070-exon-sc0000062-1491911889:436159..436231Clytia hemisphaericaexon
TCONS_00006070-exon-sc0000062-1491911889:434950..434988TCONS_00006070-exon-sc0000062-1491911889:434950..434988Clytia hemisphaericaexon
TCONS_00006070-exon-sc0000062-1491911889:434492..434539TCONS_00006070-exon-sc0000062-1491911889:434492..434539Clytia hemisphaericaexon
TCONS_00006070-exon-sc0000062-1491911889:434062..434115TCONS_00006070-exon-sc0000062-1491911889:434062..434115Clytia hemisphaericaexon
TCONS_00006070-exon-sc0000062-1491911889:433537..433695TCONS_00006070-exon-sc0000062-1491911889:433537..433695Clytia hemisphaericaexon
TCONS_00006070-exon-sc0000062-1491911889:432491..432646TCONS_00006070-exon-sc0000062-1491911889:432491..432646Clytia hemisphaericaexon
TCONS_00006070-exon-sc0000062-1491911889:431940..432051TCONS_00006070-exon-sc0000062-1491911889:431940..432051Clytia hemisphaericaexon
TCONS_00006070-exon-sc0000062-1491911889:430112..430979TCONS_00006070-exon-sc0000062-1491911889:430112..430979Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:430112..436231 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.109162	0	0	0	0.226039	0.436232	0	0	0	0.198538	0	0	0	0	0	0	0	0	0	0.715777	0	5.52061e-08	0	0	0	0	4.27132e-07	0	0	0.204744
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006070 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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