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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006277 ID=TCONS_00006277|Name=TCONS_00006277|organism=Clytia hemisphaerica|type=transcript|length=1702bp
GCCACctaacttaaaaaataaaatctagaGGGAAACCTCTAGTTgggaaa
gtaaaaaaataacgaaaagacGAAATGACATGAAGGAGAAGAGTCAACTT
GACTAAGATTTCGTTGCAGAAAATGACAATAATTGTGTATATAATTAAAG
TGTAATTTGTCTTTTTAATTAATTCTTTTTCCAATATCTTGAAATAAAGT
CTTCGTTAATTTGCTCAGATTCTTGAAATTTGGGCGGtatatttttttcc
tttgttGAAGACATGACCTCATCTTTTTCCTCTGGTAGCGAGGGAGAGTT
CGGGTCATAAACGGTAGAAACGTTCGATTCATTTAAAGTCTTTTGTGGGG
AAGGGGCTGCAGCTCCAACGGTGGATTGCTTTATAGCTGGATAAACATTT
TCCTTCTTTTTACATGGAAGGGACTTCATTAAGGTCCTGTTAACATCAAG
ACCAGTGTCACTTTCATTGTCAGATGGAAATAAGTTTCTTGAATAAAAGT
TTCTTTGGTTAGGTTTTTTGAAGGATCCAGTCTTGGCTTTCTTCTTGCGA
TTGTTTATTGTAGAGGAGTCTTGAGGAACATTGGAAACAGTTTTTTGATC
AGCATCTAACGTAAATTTTACCTTATTCTGCTGCATGACATTCTCCTGTA
AAATCATCTGTTGTGTCGTTTTGTTTTCTGACGTCAGTCCTGAGTTTGAG
CCCTCTCCATGTGCACCATCTACGATGAAGTACATTGCTTTCAATTCTTC
TCCAACATTCTCCATTGCATTGTTTGTTTGTGACTGGCTTCCTCCTGGGG
GATTAGTCTTTAGTAAAATTTGCTGTAAAATATCTGCAGGGATATTGGAA
TAATCTAATTCTACGTAATTACAGCCAGGCGGTATGTACATAGAGGCTGA
AGATTCGGCCCCTGAAACACTAACATTTTCAGAGATTTGTGTATTATTAG
TAACAATGTTAGGTTGGaccttttcaatgttttttggaCAAACTAGTTCT
GTGATAACATTATCGTTACTTTCAGATTCATCCACATCTGAAATCCCTTT
GCCTACACAGACGTTGCCTGTATCAACACTTTCTTCGAAATTGTCTACTT
TACCAGGAGAGATTCTACAATCAATATCCATTTTAGTTGAAATCTTTGAT
ATTGTTGATATTTCGGaattagttttaatttttttggcaaCAGTTGTGGA
ATATATCTCTTCTTTAGCTAGTCGTTTTTTAGTCGTTTTCATACATTGCT
GGGTATTATTTGGTCTTAAAGTACCAAAACAATATTGTGTACTTATACTA
AATACAGAGGGTTCCACTTGAACTGCTATTTCAGCATATTCAACTACTTT
TTCAACTGCTGTATGTGTTTGAATGGAAAAATGTCTAACGTCAGGTTCAG
ATTGACAAGCAACTTCCCTTGTaaaaatttcttcttcatttagaAACAAT
TGTTCTTCACTGGGGCTATCACTACTAGATATAAACTGTTGTCCAAATTC
AACCTTCATTGGCTTTGCTTGTTTGACTGTTTCTAACCCTTGATTGCTTT
GTTCAGTGATGCTAGTATATGTGGAGTCATGCTGCTGAATCGGTATGACA
ttcctttgttttgattgggttTGTATATTAGAAGGTTTGCTAGTTGTTGT
GTTAATTAAGTCACATTGAATTGTATTATTGTTGAATCGCACATCTTCTG
AG Run BLAST on NCBI transcript from alignment at sc0000066:605757..607819+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006277 ID=TCONS_00006277|Name=TCONS_00006277|organism=Clytia hemisphaerica|type=transcript|length=2063bp|location=Sequence derived from alignment at sc0000066:605757..607819+ (Clytia hemisphaerica)
GCCACctaacttaaaaaataaaatctagaGGGAAACCTCTAGTTgggaaa
gtaaaaaaataacgaaaagacGAAATGACATGAAGGAGAAGAGTCAACTT
GACTAAGATTTCGTTGCAGAAAATGACAATAATTGTGTATATAATTAAAG
TGTAATTTGTCTTTTTAATTAATTCTTTTTCCAATATCTTGAAATAAAGT
CTTCGTTAATTTGCTCAGATTCTTGAAATTTGGGCGGtatatttttttcc
tttgttGAAGACATGACCTCATCTTTTTCCTCTGGTAGCGAGGGAGAGTT
CGGGTCATAAACGGTAGAAACGTTCGATTCATTTAAAGTCTTTTGTGGGG
AAGGGGCTGCAGCTCCAACGGTGGATTGCTTTATAGCTGGATAAACATTT
TCCTTCTTTTTACATGGAAGGGACTTCATTAAGGTCCTGTTAACATCAAG
ACCAGTGTCACTTTCATTGTCAGATGGAAATAAGTTTCTTGAATAAAAGT
TTCTTTGGTTAGGTTTTTTGAAGGATCCAGTCTTGGCTTTCTTCTTGCGA
TTGTTTATTGTAGAGGAGTCTTGAGGAACATTGGAAACAGTTTTTTGATC
AGCATCTAACGTAAATTTGacctaaaattaaaaattttacaaaacgaATC
TTACTTCAGTTCCCTTTTCTGCCTATTGAAATGATGGGAATGTCCCATCG
GAGTTTGTGTATGCACCCTTTTCAGGACGACAGTGTGACTCAAACAACCT
GCAGTTTAACCCGCAAAATGACATTCTCAATCAGTCAAGATCTAGACAAT
CTAGATGAAAAAATGACCGTCTACGTCACAGAAGTTGTTCCAtatataaa
ctcgctaatgttacacatctttgtgcaataaatcagaaaaattcAACGCG
AAGAAGTTAAATAACGGACTTACAAACTATAAGGAATGTCTACTGCTTGT
GACATTACATGCTATTTGAAACAACATTTTACCTTATTCTGCTGCATGAC
ATTCTCCTGTAAAATCATCTGTTGTGTCGTTTTGTTTTCTGACGTCAGTC
CTGAGTTTGAGCCCTCTCCATGTGCACCATCTACGATGAAGTACATTGCT
TTCAATTCTTCTCCAACATTCTCCATTGCATTGTTTGTTTGTGACTGGCT
TCCTCCTGGGGGATTAGTCTTTAGTAAAATTTGCTGTAAAATATCTGCAG
GGATATTGGAATAATCTAATTCTACGTAATTACAGCCAGGCGGTATGTAC
ATAGAGGCTGAAGATTCGGCCCCTGAAACACTAACATTTTCAGAGATTTG
TGTATTATTAGTAACAATGTTAGGTTGGaccttttcaatgttttttggaC
AAACTAGTTCTGTGATAACATTATCGTTACTTTCAGATTCATCCACATCT
GAAATCCCTTTGCCTACACAGACGTTGCCTGTATCAACACTTTCTTCGAA
ATTGTCTACTTTACCAGGAGAGATTCTACAATCAATATCCATTTTAGTTG
AAATCTTTGATATTGTTGATATTTCGGaattagttttaatttttttggca
aCAGTTGTGGAATATATCTCTTCTTTAGCTAGTCGTTTTTTAGTCGTTTT
CATACATTGCTGGGTATTATTTGGTCTTAAAGTACCAAAACAATATTGTG
TACTTATACTAAATACAGAGGGTTCCACTTGAACTGCTATTTCAGCATAT
TCAACTACTTTTTCAACTGCTGTATGTGTTTGAATGGAAAAATGTCTAAC
GTCAGGTTCAGATTGACAAGCAACTTCCCTTGTaaaaatttcttcttcat
ttagaAACAATTGTTCTTCACTGGGGCTATCACTACTAGATATAAACTGT
TGTCCAAATTCAACCTTCATTGGCTTTGCTTGTTTGACTGTTTCTAACCC
TTGATTGCTTTGTTCAGTGATGCTAGTATATGTGGAGTCATGCTGCTGAA
TCGGTATGACAttcctttgttttgattgggttTGTATATTAGAAGGTTTG
CTAGTTGTTGTGTTAATTAAGTCACATTGAATTGTATTATTGTTGAATCG
CACATCTTCTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006277-exon-sc0000066-1491911889:605757..606370 | TCONS_00006277-exon-sc0000066-1491911889:605757..606370 | Clytia hemisphaerica | exon |
| TCONS_00006277-exon-sc0000066-1510915933:605757..606370 | TCONS_00006277-exon-sc0000066-1510915933:605757..606370 | Clytia hemisphaerica | exon |
| TCONS_00006277-exon-sc0000066-1575043694:605757..606370 | TCONS_00006277-exon-sc0000066-1575043694:605757..606370 | Clytia hemisphaerica | exon |
| TCONS_00006277-exon-sc0000066-1491911889:606732..607819 | TCONS_00006277-exon-sc0000066-1491911889:606732..607819 | Clytia hemisphaerica | exon |
| TCONS_00006277-exon-sc0000066-1510915933:606732..607819 | TCONS_00006277-exon-sc0000066-1510915933:606732..607819 | Clytia hemisphaerica | exon |
| TCONS_00006277-exon-sc0000066-1575043694:606732..607819 | TCONS_00006277-exon-sc0000066-1575043694:606732..607819 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000066 | supercontig | sc0000066:605757..607819 + |
Blast
The following BLAST results are available for this feature:
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