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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006298 ID=TCONS_00006298|Name=TCONS_00006298|organism=Clytia hemisphaerica|type=transcript|length=1248bpRun BLAST on NCBI protein sequence of TCONS_00006298-protein >TCONS_00006298-protein ID=TCONS_00006298-protein|Name=TCONS_00006298-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp MAAEQRQCRLAYESCPWLAPYLGVIDQNWKPVSLTHVVYPEDDLVGKILARun BLAST on NCBI transcript from alignment at sc0000066:210804..247221- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006298 ID=TCONS_00006298|Name=TCONS_00006298|organism=Clytia hemisphaerica|type=transcript|length=36418bp|location=Sequence derived from alignment at sc0000066:210804..247221- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000066:210804..247221- >TCONS_00006298 ID=TCONS_00006298|Name=TCONS_00006298|organism=Clytia hemisphaerica|type=CDS|length=6144bp|location=Sequence derived from alignment at sc0000066:210804..247221- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00006298 vs. Swiss-Prot (Human)
Match: DOPP1 (Dolichyldiphosphatase 1 OS=Homo sapiens GN=DOLPP1 PE=2 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 2.779e-64 Identity = 108/231 (46.75%), Postives = 151/231 (65.37%), Query Frame = 2
Query: 245 IDQNWKPVSLTHVVYPEDDLVGKILAWSSLVPIFIIVSFLTLIIFRRELHTMAWFLGILLNEVVNMVLKRMLKQPRPCSALDQKKLYNKYGMPSSHAQFMGXXXXXXXXXXXCRLRVHVYEKFMDNIRQHFIAFSSAGVALIVCYSRVYLHYHTVEQVLIGLCTGLFIGTFWFYIVDTVFTPYFQSIANTKIAEYFFIRDSTNIPDILWFEYTASRTEARQRLRRTTQKSQ 937
+ +W+PV+LTHV YP DL G +LA+ SL P+F+IV F+TLIIF+RELHT+++ G+ LNE VN ++K ++++PRPC + KYGMPSSH+QFM FF++Y+ F Y R+ +F+D + +H ++ VA +V YSRVYL YHT QVL G G + WF V TP F IA ++E+F IRD++ IP++LWFEYT +R EAR R R+ K Q
Sbjct: 9 LPASWRPVTLTHVEYPAGDLSGHLLAYLSLSPVFVIVGFVTLIIFKRELHTISFLGGLALNEGVNWLIKNVIQEPRPCGG-PHTAVGTKYGMPSSHSQFMWFFSVYSFLFLYLRMHQTNNARFLDLLWRHVLSLGLLAVAFLVSYSRVYLLYHTWSQVLYGGIAGGLMAIAWFIFTQEVLTPLFPRIAAWPVSEFFLIRDTSLIPNVLWFEYTVTRAEARNRQRKLGTKLQ 238 The following BLAST results are available for this feature:
BLAST of TCONS_00006298 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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