TCONS_00006366 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006366
Unique NameTCONS_00006366
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006366 ID=TCONS_00006366|Name=TCONS_00006366|organism=Clytia hemisphaerica|type=transcript|length=338bp
CAACTTTGGACAAGTCTTACTGGAAAGAAATTTGTTTGAATCAACCAATG
GATTACTCGAAGAAAGAGACAGCCAAGCACACGTTCAAGAAGCCAAAGAG
ACGTCAAGAAGAACAGATCCTGGTGAGAATTTAGGGAGGCCTGGAACGAA
CCAGATTCacgatttgaaagaaaaagatgtGGAAGAAGAAAgtgatgatg
aagaagaaattgCACCGAGAATGAGACGTTCTGATTCTAGTATTCGACAA
CGGTACACAAATGTCGACaagaatgaaaagaaaacatttcgaGCCGGTTT
TGAATACGGTTTTGTTCGTGCTATAGCGGGATTTATTA
Run BLAST on NCBI

protein sequence of TCONS_00006366-protein

>TCONS_00006366-protein ID=TCONS_00006366-protein|Name=TCONS_00006366-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
NFGQVLLERNLFESTNGLLEERDSQAHVQEAKETSRRTDPGENLGRPGTN
QIHDLKEKDVEEESDDEEEIAPRMRRSDSSIRQRYTNVDKNEKKTFRAGF
EYGFVRAIAGFI
Run BLAST on NCBI

transcript from alignment at sc0000066:501426..501763

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006366 ID=TCONS_00006366|Name=TCONS_00006366|organism=Clytia hemisphaerica|type=transcript|length=338bp|location=Sequence derived from alignment at sc0000066:501426..501763 (Clytia hemisphaerica)
TAATAAATCCCGCTATAGCACGAACAAAACCGTATTCAAAACCGGCtcga
aatgttttcttttcattcttGTCGACATTTGTGTACCGTTGTCGAATACT
AGAATCAGAACGTCTCATTCTCGGTGcaatttcttcttcatcatcacTTT
CTTCTTCCacatctttttctttcaaatcgtGAATCTGGTTCGTTCCAGGC
CTCCCTAAATTCTCACCAGGATCTGTTCTTCTTGACGTCTCTTTGGCTTC
TTGAACGTGTGCTTGGCTGTCTCTTTCTTCGAGTAATCCATTGGTTGATT
CAAACAAATTTCTTTCCAGTAAGACTTGTCCAAAGTTG

Coding sequence (CDS) from alignment at sc0000066:501426..501763

>TCONS_00006366 ID=TCONS_00006366|Name=TCONS_00006366|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0000066:501426..501763 (Clytia hemisphaerica)
AATAAATCCCGCTATAGCACGAACAAAACCGTATTCAAAACCGGCtcgaa
atgttttcttttcattcttGTCGACATTTGTGTACCGTTGTCGAATACTA
GAATCAGAACGTCTCATTCTCGGTGcaatttcttcttcatcatcacTTTC
TTCTTCCacatctttttctttcaaatcgtGAATCTGGTTCGTTCCAGGCC
TCCCTAAATTCTCACCAGGATCTGTTCTTCTTGACGTCTCTTTGGCTTCT
TGAACGTGTGCTTGGCTGTCTCTTTCTTCGAGTAATCCATTGGTTGATTC
AAACAAATTTCTTTCCAGTAAGACTTGTCCAAAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003639XLOC_003639Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006366-proteinTCONS_00006366-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006366-exon-sc0000066-1491911889:501426..501763TCONS_00006366-exon-sc0000066-1491911889:501426..501763Clytia hemisphaericaexon
TCONS_00006366-exon-sc0000066-1510915933:501426..501763TCONS_00006366-exon-sc0000066-1510915933:501426..501763Clytia hemisphaericaexon
TCONS_00006366-exon-sc0000066-1575043694:501426..501763TCONS_00006366-exon-sc0000066-1575043694:501426..501763Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:501426..501763 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.67532	7.24103	7.16197	5.78829	5.56317	4.68916	5.65728	4.63424	2.78103	1.72238	2.78631	2.01477	1.09744	0.7598	1.09315	1.34071	2.27101	2.1161	5.84702	20.8028	1.06361	0.778191	16.0819	13.1874	59.6456	61.6651	2.26263	1.20737	1.221	1.555
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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