TCONS_00006367 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006367
Unique NameTCONS_00006367
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length360

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006367 ID=TCONS_00006367|Name=TCONS_00006367|organism=Clytia hemisphaerica|type=transcript|length=360bp
AACAAATGATAACCAAAACTCCCACAGCTATTCCAAATCCCACTCCAATC
TTGTACTCAGTTGTTTCATCACCACTATCTTCATTGTCATTGTTTCGCCT
CACCCTTGATGCAATCAACTCCTCTTCATCATTTTCGTTTGAATCTTTAA
TCTCCTCTTCTAATTGGTTTAAATTTCTCTGGCGTCCGATTCTTCTTAAT
GGCTCAATGTTTGTTTGGATGTCTTCTTTGATTGGTTCATTTGATATCGA
ATGCTCCGAAACTTTCCTGGTCAAAACGACttgccaaaagttgaaaacac
ttattgcaataaaaatgctcaaGAAAAGTCTCGACATTTTCTGAGCTGTT
TCCCCTCCGT
Run BLAST on NCBI

protein sequence of TCONS_00006367-protein

>TCONS_00006367-protein ID=TCONS_00006367-protein|Name=TCONS_00006367-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
GGETAQKMSRLFLSIFIAISVFNFWQVVLTRKVSEHSISNEPIKEDIQTN
IEPLRRIGRQRNLNQLEEEIKDSNENDEEELIASRVRRNNDNEDSGDETT
EYKIGVGFGIAVGVLVIIC
Run BLAST on NCBI

transcript from alignment at sc0000066:502287..502646

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006367 ID=TCONS_00006367|Name=TCONS_00006367|organism=Clytia hemisphaerica|type=transcript|length=360bp|location=Sequence derived from alignment at sc0000066:502287..502646 (Clytia hemisphaerica)
ACGGAGGGGAAACAGCTCAGAAAATGTCGAGACTTTTCttgagcattttt
attgcaataagtgttttcaacttttggcaaGTCGTTTTGACCAGGAAAGT
TTCGGAGCATTCGATATCAAATGAACCAATCAAAGAAGACATCCAAACAA
ACATTGAGCCATTAAGAAGAATCGGACGCCAGAGAAATTTAAACCAATTA
GAAGAGGAGATTAAAGATTCAAACGAAAATGATGAAGAGGAGTTGATTGC
ATCAAGGGTGAGGCGAAACAATGACAATGAAGATAGTGGTGATGAAACAA
CTGAGTACAAGATTGGAGTGGGATTTGGAATAGCTGTGGGAGTTTTGGTT
ATCATTTGTT

Coding sequence (CDS) from alignment at sc0000066:502287..502646

>TCONS_00006367 ID=TCONS_00006367|Name=TCONS_00006367|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at sc0000066:502287..502646 (Clytia hemisphaerica)
GGAGGGGAAACAGCTCAGAAAATGTCGAGACTTTTCttgagcatttttat
tgcaataagtgttttcaacttttggcaaGTCGTTTTGACCAGGAAAGTTT
CGGAGCATTCGATATCAAATGAACCAATCAAAGAAGACATCCAAACAAAC
ATTGAGCCATTAAGAAGAATCGGACGCCAGAGAAATTTAAACCAATTAGA
AGAGGAGATTAAAGATTCAAACGAAAATGATGAAGAGGAGTTGATTGCAT
CAAGGGTGAGGCGAAACAATGACAATGAAGATAGTGGTGATGAAACAACT
GAGTACAAGATTGGAGTGGGATTTGGAATAGCTGTGGGAGTTTTGGTTAT
CATTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003640XLOC_003640Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006367-proteinTCONS_00006367-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006367-exon-sc0000066-1491911889:502287..502646TCONS_00006367-exon-sc0000066-1491911889:502287..502646Clytia hemisphaericaexon
TCONS_00006367-exon-sc0000066-1510915933:502287..502646TCONS_00006367-exon-sc0000066-1510915933:502287..502646Clytia hemisphaericaexon
TCONS_00006367-exon-sc0000066-1575043694:502287..502646TCONS_00006367-exon-sc0000066-1575043694:502287..502646Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:502287..502646 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.64466	0.45823	2.1282	0.260263	0.633691	0	1.51034	0.565584	0	0.245242	0.714113	0.312953	0.625036	0.48683	0	0.143173	0	0	9.24108	25.0901	0.681494	0.664818	12.1226	12.9805	60.5418	79.2471	2.57733	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006367 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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