TCONS_00006373 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006373
Unique NameTCONS_00006373
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006373 ID=TCONS_00006373|Name=TCONS_00006373|organism=Clytia hemisphaerica|type=transcript|length=400bp
GCCGAATAGCAgttgttttgtatatttttatgttaATTTGATCGTCAGTG
TATTGTCTATTTATTTGTTAATTAGTACGTAATTATGTGACACGTATTCC
CTTAGGCTTGCTCTCCTTCGTGTGTTTCTCTTTGTCTAGCGTCTGTCCCA
CGGAACTTCGTGTGCCTTTTTCTGTGCACTGTTTCTGCTTTTGCGTTCAG
ATGAACAAAGATCACTGTAGAGTGAATACAGAGTTACATTGTCGAAACAG
AAAACCAGAATTGTAAAACTTATAGTCTGAAGAGACGCCCAGAAGAATAA
TAAAGAATATTACTATATATCTCACTGCATTAGAGCTTATGGGACCAACG
TGTTTAGTAAGTAGTATTTCCTTTATCTTAATGTTGTTCTTTTATATTGT
Run BLAST on NCBI

transcript from alignment at sc0000066:628114..628513

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006373 ID=TCONS_00006373|Name=TCONS_00006373|organism=Clytia hemisphaerica|type=transcript|length=400bp|location=Sequence derived from alignment at sc0000066:628114..628513 (Clytia hemisphaerica)
ACAATATAAAAGAACAACATTAAGATAAAGGAAATACTACTTACTAAACA
CGTTGGTCCCATAAGCTCTAATGCAGTGAGATATATAGTAATATTCTTTA
TTATTCTTCTGGGCGTCTCTTCAGACTATAAGTTTTACAATTCTGGTTTT
CTGTTTCGACAATGTAACTCTGTATTCACTCTACAGTGATCTTTGTTCAT
CTGAACGCAAAAGCAGAAACAGTGCACAGAAAAAGGCACACGAAGTTCCG
TGGGACAGACGCTAGACAAAGAGAAACACACGAAGGAGAGCAAGCCTAAG
GGAATACGTGTCACATAATTACGTACTAATTAACAAATAAATAGACAATA
CACTGACGATCAAATtaacataaaaatatacaaaacaacTGCTATTCGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003646XLOC_003646Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006373-exon-sc0000066-1491911889:628114..628513TCONS_00006373-exon-sc0000066-1491911889:628114..628513Clytia hemisphaericaexon
TCONS_00006373-exon-sc0000066-1510915933:628114..628513TCONS_00006373-exon-sc0000066-1510915933:628114..628513Clytia hemisphaericaexon
TCONS_00006373-exon-sc0000066-1575043694:628114..628513TCONS_00006373-exon-sc0000066-1575043694:628114..628513Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:628114..628513 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.85747	1.99246	1.47219	2.4691	1.25245	0.593823	1.19404	0.447137	1.09568	1.16329	2.44643	1.73189	2.8413	0.769752	0.421894	0.905514	0.836639	0.714607	0.394907	0.619863	0	1.05118	0.851897	1.93625	2.19372	2.66978	3.56575	1.90273	3.71097	3.15074
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006373 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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