TCONS_00046076 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046076
Unique NameTCONS_00046076
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length405

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046076 ID=TCONS_00046076|Name=TCONS_00046076|organism=Clytia hemisphaerica|type=transcript|length=405bp
TTCAAGTGTTCGACTCACACGCAGGGGAGCTTCCCAAGTCTCTCTTCATT
TCATTCATCCTACCCTGTCTGAAAAAGATAGGTGAAGATGTCAAAGAGAA
GCTCGGTCCAAACCTCTCAGTACCCATGATTCTATTTGCCAAAGGAGCGC
ATTACGCATTCAACGAAATAAACGAGACAAACTATGACGTCATCGCACTC
GACTGGACAATGGATGTCGAAAAAGCAAGAGAATGCTTCCCGAACAAAAC
GTTGATGGGAAATCTGGACCCGTGCGCTCTTTATGCTGATAAGGAGAAAA
TTGATGAATTAGCAAAGGACTTGGTTGAGAAATTCGGAACTCGCCGATGG
ATCGCAAATCTCGGACACGAGGCCCATACAAGTACCTGATCACGCTCATC
ACGCC
Run BLAST on NCBI

transcript from alignment at scaffold_105:693350..695031-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046076 ID=TCONS_00046076|Name=TCONS_00046076|organism=Clytia hemisphaerica|type=transcript|length=1682bp|location=Sequence derived from alignment at scaffold_105:693350..695031- (Clytia hemisphaerica)
TTCAAGTGTTCGACTCACACGCAGGGGAGCTTCCCAAGTCTCTCTTCATT
TCATTCATCCTACCCTGTCTGAAAAAGATAGGTGAAGATGTCAAAGAGAA
GCTCGGTCCAAACCTCTCAGTACCCATGGTAACTCATGCTTTTAGCTTTA
GATAGTTTATCCTTGGATAATGCTCCTAATCTACAAACTTTGCCCTTCGT
TTCAAGTCTAAAAGAGATGTATAGCCTGTATATTGTTTATTTTTGATAAT
ATCTCTCTTTCAAAAGTTCAGAAGCTTCGTGTTATTATCGGATCCTAGTC
TAACATTCGTGGGTATCAATTCAAATCCATTGACCATTTCTCAATTCTTC
TTCAGATTCTATTTGCCAAAGGAGCGCATTACGCATTCAACGAAATAAAC
GAGACAAACTATGACGTCATCGCACTCGACTGGACAATGGATGTCGAAAA
AGCAAGGTTGGATTACGTCTTCTTAGGGGATAATGTTTACTGTTTGAACG
AAAATCCTGAGACTCAAATTATGTCTCTTAAAATGAGGACGCGTTGTATT
TTCTTTTGAGGACATACATTTGTGTTGATTGTTGAAGGGTAACAAATAAC
AAAATCCTTGTTTATCTTTTACTTTGTAGAGAATGCTTCCCGAACAAAAC
GTTGATGGGAAATCTGGACCCGTGCGCTCTTTATGCTGATAAGGTACGTT
CTATTTCTCTTGACGTTCTCTGACTTACAGTAACTTGGTTAGCTCTACTC
CAGGGGACATATTATCGACAGTTCAGTTTGATCTTTGTTTGAACCACTTT
GTTAGTGGAACTTCTTTTTCAAATTCTTTCGATTAGAAGCTCAGCTCTCT
CATTCCCAAAAGTTTATTCAAAATACGACATTCCATTGGTTCTTTTTACA
GGAGAAAATTGATGAATTAGCAAAGGACTTGGTTGAGAAATTCGGAACTC
GCCGATGGATCGCAAATCTCGGACACGGTATGTACCCGGACATGTCGCCT
GACCATTTGGAAGCTCTTGTAAATTCTGTTCACAAACATTCGCAAAAAGA
TCTGACGTCATGACAAATTAAAAGAATGTCATGGTTTTATAGAAATTTTA
TAGTTTTGGAGGTGATAGCGTGCCTTCACAGACCAAATATGAACGACGGC
TGTTCCGGATACTGTACCACTGGGAAAATATCGTTGTGTTTGGTCACTCC
GTTTAAGATGAAGCTGTATCGTTTAATTAAACTTTGTCGGTCTTTAGATA
CCTTTCTCATCCACCAAGATATAANAGCTGTATCGTTTAATTAAACTTTG
GCGGTCTTTACATATCTTTCTCATCCACCAAGATCTATTTACGCTAACTG
AATAAAGGTTGTTTTTTCGTTTGAACCCATTTAGTAAATATTTGAATTAT
TTTTTTAGCAATCAATATTTTTATTTATATTTGTTAGGTTGAACGTTTTT
TTAGAAATAAAAAAAACTCGAATCTGGAAATATTTTAACGGGGACTCCTT
ATGAAGCCTTATAATGTTTCTAAATCTTTCTATACATTATGAAGGTATTG
CACTTGTCTCAGTAACCTGGTACTATTGCCAGTAAAGGATATTGTCTGTT
CCAGACCCGATATCTACAGAAATTTCAAAATCCATTGCCTTTCTAGAGGC
CCATACAAGTACCTGATCACGCTCATCACGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029425XLOC_029425Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046076-exon-scaffold_105-1575043694:694904..695031TCONS_00046076-exon-scaffold_105-1575043694:694904..695031Clytia hemisphaericaexon
TCONS_00046076-exon-scaffold_105-1575043694:694576..694676TCONS_00046076-exon-scaffold_105-1575043694:694576..694676Clytia hemisphaericaexon
TCONS_00046076-exon-scaffold_105-1575043694:694339..694402TCONS_00046076-exon-scaffold_105-1575043694:694339..694402Clytia hemisphaericaexon
TCONS_00046076-exon-scaffold_105-1575043694:694055..694130TCONS_00046076-exon-scaffold_105-1575043694:694055..694130Clytia hemisphaericaexon
TCONS_00046076-exon-scaffold_105-1575043694:693350..693385TCONS_00046076-exon-scaffold_105-1575043694:693350..693385Clytia hemisphaericaexon
TCONS_00046076-exon-scaffold_105-1510915933:694904..695031TCONS_00046076-exon-scaffold_105-1510915933:694904..695031Clytia hemisphaericaexon
TCONS_00046076-exon-scaffold_105-1510915933:694576..694676TCONS_00046076-exon-scaffold_105-1510915933:694576..694676Clytia hemisphaericaexon
TCONS_00046076-exon-scaffold_105-1510915933:694339..694402TCONS_00046076-exon-scaffold_105-1510915933:694339..694402Clytia hemisphaericaexon
TCONS_00046076-exon-scaffold_105-1510915933:694055..694130TCONS_00046076-exon-scaffold_105-1510915933:694055..694130Clytia hemisphaericaexon
TCONS_00046076-exon-scaffold_105-1510915933:693350..693385TCONS_00046076-exon-scaffold_105-1510915933:693350..693385Clytia hemisphaericaexon
TCONS_00046076-exon-scaffold_105-1491911889:694904..695031TCONS_00046076-exon-scaffold_105-1491911889:694904..695031Clytia hemisphaericaexon
TCONS_00046076-exon-scaffold_105-1491911889:694576..694676TCONS_00046076-exon-scaffold_105-1491911889:694576..694676Clytia hemisphaericaexon
TCONS_00046076-exon-scaffold_105-1491911889:694339..694402TCONS_00046076-exon-scaffold_105-1491911889:694339..694402Clytia hemisphaericaexon
TCONS_00046076-exon-scaffold_105-1491911889:694055..694130TCONS_00046076-exon-scaffold_105-1491911889:694055..694130Clytia hemisphaericaexon
TCONS_00046076-exon-scaffold_105-1491911889:693350..693385TCONS_00046076-exon-scaffold_105-1491911889:693350..693385Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:693350..695031 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
80.6593	68.1822	138.474	108.316	22.12	13.408	20.6321	13.4263	36.5998	64.3167	26.7576	26.9959	19.749	19.3087	22.9481	22.9784	46.1664	43.1146	4.6268	17.99	13.1076	11.6771	44.0312	42.9352	2.35879	7.1951	27.2349	12.6443	29.4557	23.9267
Blast
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BLAST of TCONS_00046076 vs. Swiss-Prot (Human)
Match: DCUP (Uroporphyrinogen decarboxylase OS=Homo sapiens GN=UROD PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 4.972e-35
Identity = 61/125 (48.80%), Postives = 83/125 (66.40%), Query Frame = 3 
Query:    3 QVFDSHAGELPKSLFISFILPCLKKIGEDVKEKLGPN--LSVPMILFAKGAHYAFNEINETNYDVIALDWTMDVEKARECFPNK-TLMGNLDPCALYADKEKIDELAKDLVEKFGTRRWIANLGH 368
            Q+F+SHAG L   LF  F LP ++ + + VK +L       VPMI+FAK  H+A  E+ +  Y+V+ LDWT+  +KAREC     TL GNLDPCALYA +E+I +L K +++ FG  R+IANLGH
Sbjct:  215 QLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEIGQLVKQMLDDFGPHRYIANLGH 339
The following BLAST results are available for this feature:
BLAST of TCONS_00046076 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCUP4.972e-3548.80Uroporphyrinogen decarboxylase OS=Homo sapiens GN=... [more]
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