TCONS_00046078 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046078
Unique NameTCONS_00046078
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length690

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046078 ID=TCONS_00046078|Name=TCONS_00046078|organism=Clytia hemisphaerica|type=transcript|length=690bp
GCAATGTTAGCAAAGAAAAAGAACAGTAAAGAACCTGTGGGGAGATAGGA
AAACTAATAAACAATGAATGAAATAGACCAGAAATTTCCACCattgaaaa
atgatttgttATTGAAAGCAGCTCGAGGTGAAGAGGTCTCAAGAATTCCA
ATATGGGTAATGAGACAAGCTGGAAGGTATCTGCCAGaatttcgaGAAGT
ACGTTTAGAACatgaatttttcaaagtttgccgAACACGAGAACTGGCTT
GTGAAGTGACCATGCAGCCATTACGTCGATTTGATTTGGATGGTTCCATC
ATTTTCAGCGACATTCTTGTTGTTCCCCAGgcaCTGGGCATGACAGTGGA
AATGGTTAAAGGAAAGGGTCCTGTTCTTCCAGAACCATTGGTCACACCAG
ACGATCTGAAGCGCTTGAACCGTGAAGCAGACGTGAAAGAAGAGTTGAAA
TACGTTTACGAAGCCATCACGTTAACGCGGAAGACCATCGACGGGAAGGT
TCCTCTCATCGGATTTGCAGGGGCTCCAtGGACTTTGATGGTTTACATGA
TAGAAGGTGGAGGTTCCAAAACATACTCCAAAGCCAAATCATGGTTGTAT
AAATATCCAGAGGAGAGTCGTGATTTGTTGAACTTGTTGTCAACTTTCAT
TGTCGATTACTTGGTGGAGCAAGTCAAAGCTGGTGCACAG
Run BLAST on NCBI

protein sequence of TCONS_00046078-protein

>TCONS_00046078-protein ID=TCONS_00046078-protein|Name=TCONS_00046078-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MNEIDQKFPPLKNDLLLKAARGEEVSRIPIWVMRQAGRYLPEFREVRLEH
EFFKVCRTRELACEVTMQPLRRFDLDGSIIFSDILVVPQALGMTVEMVKG
KGPVLPEPLVTPDDLKRLNREADVKEELKYVYEAITLTRKTIDGKVPLIG
FAGAPWTLMVYMIEGGGSKTYSKAKSWLYKYPEESRDLLNLLSTFIVDYL
VEQVKAGAQ
Run BLAST on NCBI

transcript from alignment at scaffold_105:695406..699475-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046078 ID=TCONS_00046078|Name=TCONS_00046078|organism=Clytia hemisphaerica|type=transcript|length=4070bp|location=Sequence derived from alignment at scaffold_105:695406..699475- (Clytia hemisphaerica)
GCAATGTTAGCAAAGAAAAAGAACAGTAAAGAACCTGTGGGGAGATAGGT
AATTTCAGGCTATTAAAAGTATATACTTTTCAGCCATTGATTGGGAAAGG
GGGAAGGGGGTCAGAGTCTTAACAGGATCCATTTTTTGAAATTTTTGAAA
TTTTTGAACTTCAGCTAAACATCCCTGTCATCATGGTAAAAAAAGTCAAA
GAAATTGGCAGTTTTCAAATTCACAAAAAGCCTCATAAATTGCCTCATAT
TCTCCTTCAAATTTATTAAAGTTCTCTGGGTGGGTATAAGGGGAGTGGTG
TCAAATATTTTGAAAATTTTTCTGTACATACTATGTGGATGACGTTGGAG
AGTAACCACCTATCAACAAACTCCTTTCATTTAATAACCTAAACAAAAAA
TCTTAACTCGAAAAATATAACCCATATTGCAATGTATCATGTGACTTTTA
CTTATTTTTAGGAAAACTAATAAACAATGAATGAAATAGACCAGAAATTT
CCACCATTGAAAAATGATTTGTTATTGAAAGCAGCTCGAGGTGAAGAGGT
CTCAAGAATTCCAATATGGGTAATGAGACAAGCTGGAAGGTATCTGCCAG
GTCTGTTTCTATCTTTTCCTCAAACCCATCATTGTCAAATATCAACTTTA
TTCTATTCTGACTAACGTTTTCTTCTGGTTCTGTTCTGACTACATTAAAG
GAAGAAATTTTGGTGGGAAGAAAATTTGGCTGATAAAATTTAAGTTGCTC
CATTCATTCCCCCAAATGTGTGCTATTTCAGGCTTTAAAACAGGTTTTTC
CTTTTTTTAATGGTATTTTTCGGACAAAAATGTCCTTCGTTTGCCAAATT
AAATTTTTCAAGTTCACCGCCAAATTGAATTCCCTCTGAAAAAACTTTTT
CAGCCATCTGCCAAATTAAATTTCCGCCAAAAGTTCTTCCTTTAATGTAT
TTGTATTGCAATTCCTCACTTTTTGATTTGTTAGCCGTCTTATGTTTTCA
ATGCTCATTTTTCATTTTTAGAATTTCGAGAAGTACGTTTAGAACATGAA
TTTTTCAAAGTTTGCCGAACACGAGAACTGGCTTGTGAAGTGACCATGCA
GGTGATTTTTTTTCGATATTTTGTTCTTATTCTTTTGACATTATCATCCC
CAATACTTTTCTATCCTTCTTTTTTTGTCAAACAGATTTGACAAAAGGTT
GTTAGATCTAACTTCTAGTAAAATTGAAAGACAAACCAATTTTTCAGCAA
TTTTATTATATATGATATGACTTTTTTGTCCTTTCAGCCATTACGTCGAT
TTGATTTGGATGGTTCCATCATTTTCAGCGACATTCTTGTTGTTCCCCAG
GTTTGCTTTCTCTCATTTCAAATCTATAAGCAAGTGCCTAAACATAATGG
GCTGAAAATGACACTATTAATAATAGGTAGCCTAAAGTATGGACAACATT
CTAGTATAGAACTATAGTACAGTAAAGTCTGGGTAAGAGTTGATAAAAAT
CAGAATTAAAGGGAGCCTATATTAGGCACCTGAGAGTTTCTATAGTAAAA
TCAATGCCTTGTGAACTTTACAAATTTTCTTTCTTTATTTCTTGATATAT
TTTAAAATGTTACTGTAAACACATCTTTGAAAATTCAGTTTCAAATTTTT
ACCAGCTTGTATAATGAAATCTGTGTCCATGCGAGTTTTTCCAAATCAGA
TGTATATTTGCTAATTTTTGCGTTTCTGGTGCCACTTTGGCCAAAAAAAA
AGTAGTTTTGTTTCCGGAAATGCGGGTGACGAAAAAAAATCTCACCCGGG
CGGCCGGAAAATATTTTTTTTTTTCAATTTTCCTAGAAAATCTCTAATTG
ACGTGTACGAAAAAATAATCCAGGTTCGATGTCTCTTTACTTGAAAAAAC
GAAATTTTAAGACGAAGCTGTACTCTAAGGTAATTCTATTCACAACAACA
TAAAACAGGAAAGTAGAAAACATTTGTGACAGAAGATTTTCTTTTTCAAA
ACACAAGTGACATACGTAAATCTTTGAATACGATCTCGTTAAATGGATCG
TAAAATCGTAAAATGGAAAATAAACTCTTTATAAATCTTTGAATACAATC
GTTAAATGGATCGTAAAATCGTAAAATGGAAAATAAACTCTTTATAAATC
TTTGAATACAATCGTTAAATGGATCGTAAAATCGTAAAATGGAAAATAAA
CTCTTTATAAATCTTTGAATACAATCGTTAAATGGATCGTAAAATCGTAA
AATGGAAAATAAACTCTTTATGTATATTTTTTATTGCGACGAGCTTCTAT
TTGCGGCCGGGTGAGATATATTTTTTCCAAAAAAAAGTTCACCCGGCCGA
TTTCCGGAAACAAGACTACTTTTTTTTTTGGCCTTTCAACTAATTTTTAA
TTGATTTGAAAAATAAATCCATGCAAGATGTCTCTTAACGCCAATTGCCA
AAGTAAATATTGCCAAAATTCATCCGAATAAAGCAATTGATACAGAAATT
TATTACAAGTTTTTCAGGAACACCCAACTACTACTTGTCATTTCACATGA
AATTTCAAATCATAATTGGACACTTTGCGAGAAGCCCAAAGAATGTTTTA
TTTTTTATCACACATCTTCACACTTTAAATTACTTTCATTTTCAGGCACT
GGGCATGACAGTGGAAATGGTTAAAGGAAAGGTCGGTTTTCTCTTTCTCA
CTTACTAGTCGGGGTATGTTTTTACATTTAATAATATTCGATGCAGTGCA
TTGAATGGAATTGAAGGCTCCCAACATTCAACGTGTTCTTTCAGAATGTC
TTCAAACCCTGAAATGGGGTTGTGCTCTTTTTTTTCTTCCTCTATATAGG
TTAGATTTAGGTTAAAAATAATTCACCTACAATCAGTGACTAAATACTTA
GCACGAAAGGGAAATTCCCCACGAAATTTTATAACCACAAACAATTTGGA
AGGGTAGAGTTTTAACGCTAGACTTAAGACAGGAGCTTAGGATCTGAGGA
TCCAAAAGTTCAAAAATGGTACAGTAGGGCTTGAAATATGGCCTAGAAAC
CAATAAATTCCTCCCAAGTTGAAATAATTGATGAAATCATCTGGCTCGAA
CTTCAATTTTCGAAAAATGGTAAAATTGCCAAAATTGCCAATATGTTATG
GCACTGATTGTAGATTTATCATGTTAGATCACTTTTTTAGGGTCCTGTTC
TTCCAGAACCATTGGTCACACCAGACGATCTGAAGGTTTGTGATTATTTT
TTTAACCCTCTTTTTAAATATTATAAAACAAAAATTTTTAACGTTTTTGT
TTGCATTCAGTTGGATTGCTAGATATTGAATATACATAAGATATTATTAA
ATTGCTTTTGGAAAGAAACTCAATGCTTGAGAAAGCGATAATTCTAATGT
ACCTTTCAATACTTTATATAATGGGTCTGGATTAGAGGCTACCAGGCAGG
ATTGGCATTGAATGTCTGGAGTGCAATAGTAAACTCTAACTCTCTCATCT
TTGGGCTTACAAAGCCTTTTGTCATTTGTTTTGAAGCCATGCCAATAACC
TTGTATTATATTCTCCTTTCTTCCAGCGCTTGAACCGTGAAGCAGACGTG
AAAGAAGAGTTGAAATACGTTTACGAAGCCATCACGTTAACGCGGAAGAC
CATCGACGGGAAGGTTCCTCTCATCGGATTTGCAGGGGCTCCAGTAAGTC
TGATTGAAAATTATTAACCTTAGTGTGATAAGTCAGCATGGCTAGTTTTC
TTTAAGAATTGAAAATATTTTTATGATAATACAGCCGGATGAACGGTAAG
AAATCTGAAAGGTCTTCTCTGAGTCTTTGACATGTAAATTGTTTGGTAAG
AATGGAAACGAATGGAAAACAGCACACAGCTTCAATTTTCCTTTTTCTTT
CTTTCTAGTGGACTTTGATGGTTTACATGATAGAAGGTGGAGGTTCCAAA
ACATACTCCAAAGCCAAATCATGGTTGTATAAATATCCAGAGGAGAGTCG
TGATTTGTTGAACTTGTTGTCAACTTTCATTGTCGATTACTTGGTGGAGC
AAGTCAAAGCTGGTGCACAG

Coding sequence (CDS) from alignment at scaffold_105:695406..699475-

>TCONS_00046078 ID=TCONS_00046078|Name=TCONS_00046078|organism=Clytia hemisphaerica|type=CDS|length=4389bp|location=Sequence derived from alignment at scaffold_105:695406..699475- (Clytia hemisphaerica)
TGGACTTTGATGGTTTACATGATAGAAGGTGGAGGTTCCAAAACATACTC
CAAAGCCAAATCATGGTTGTATAAATATCCAGAGGAGAGTCGTGATTTGT
TGAACTTGTTGTCAACTTTCATTGTCGATTACTTGGTGGAGCAAGTCAAA
GCTGGTGCACAGCGCTTGAACCGTGAAGCAGACGTGAAAGAAGAGTTGAA
ATACGTTTACGAAGCCATCACGTTAACGCGGAAGACCATCGACGGGAAGG
TTCCTCTCATCGGATTTGCAGGGGCTCCAGGTCCTGTTCTTCCAGAACCA
TTGGTCACACCAGACGATCTGAAGGCACTGGGCATGACAGTGGAAATGGT
TAAAGGAAAGCCATTACGTCGATTTGATTTGGATGGTTCCATCATTTTCA
GCGACATTCTTGTTGTTCCCCAGAATTTCGAGAAGTACGTTTAGAACATG
AATTTTTCAAAGTTTGCCGAACACGAGAACTGGCTTGTGAAGTGACCATG
CAGATGAATGAAATAGACCAGAAATTTCCACCATTGAAAAATGATTTGTT
ATTGAAAGCAGCTCGAGGTGAAGAGGTCTCAAGAATTCCAATATGGGTAA
TGAGACAAGCTGGAAGGTATCTGCCAGTGGACTTTGATGGTTTACATGAT
AGAAGGTGGAGGTTCCAAAACATACTCCAAAGCCAAATCATGGTTGTATA
AATATCCAGAGGAGAGTCGTGATTTGTTGAACTTGTTGTCAACTTTCATT
GTCGATTACTTGGTGGAGCAAGTCAAAGCTGGTGCACAGCGCTTGAACCG
TGAAGCAGACGTGAAAGAAGAGTTGAAATACGTTTACGAAGCCATCACGT
TAACGCGGAAGACCATCGACGGGAAGGTTCCTCTCATCGGATTTGCAGGG
GCTCCAGGTCCTGTTCTTCCAGAACCATTGGTCACACCAGACGATCTGAA
GGCACTGGGCATGACAGTGGAAATGGTTAAAGGAAAGCCATTACGTCGAT
TTGATTTGGATGGTTCCATCATTTTCAGCGACATTCTTGTTGTTCCCCAG
AATTTCGAGAAGTACGTTTAGAACATGAATTTTTCAAAGTTTGCCGAACA
CGAGAACTGGCTTGTGAAGTGACCATGCAGATGAATGAAATAGACCAGAA
ATTTCCACCATTGAAAAATGATTTGTTATTGAAAGCAGCTCGAGGTGAAG
AGGTCTCAAGAATTCCAATATGGGTAATGAGACAAGCTGGAAGGTATCTG
CCAGTGGACTTTGATGGTTTACATGATAGAAGGTGGAGGTTCCAAAACAT
ACTCCAAAGCCAAATCATGGTTGTATAAATATCCAGAGGAGAGTCGTGAT
TTGTTGAACTTGTTGTCAACTTTCATTGTCGATTACTTGGTGGAGCAAGT
CAAAGCTGGTGCACAGCGCTTGAACCGTGAAGCAGACGTGAAAGAAGAGT
TGAAATACGTTTACGAAGCCATCACGTTAACGCGGAAGACCATCGACGGG
AAGGTTCCTCTCATCGGATTTGCAGGGGCTCCAGGTCCTGTTCTTCCAGA
ACCATTGGTCACACCAGACGATCTGAAGGCACTGGGCATGACAGTGGAAA
TGGTTAAAGGAAAGCCATTACGTCGATTTGATTTGGATGGTTCCATCATT
TTCAGCGACATTCTTGTTGTTCCCCAGAATTTCGAGAAGTACGTTTAGAA
CATGAATTTTTCAAAGTTTGCCGAACACGAGAACTGGCTTGTGAAGTGAC
CATGCAGATGAATGAAATAGACCAGAAATTTCCACCATTGAAAAATGATT
TGTTATTGAAAGCAGCTCGAGGTGAAGAGGTCTCAAGAATTCCAATATGG
GTAATGAGACAAGCTGGAAGGTATCTGCCAGTGGACTTTGATGGTTTACA
TGATAGAAGGTGGAGGTTCCAAAACATACTCCAAAGCCAAATCATGGTTG
TATAAATATCCAGAGGAGAGTCGTGATTTGTTGAACTTGTTGTCAACTTT
CATTGTCGATTACTTGGTGGAGCAAGTCAAAGCTGGTGCACAGCGCTTGA
ACCGTGAAGCAGACGTGAAAGAAGAGTTGAAATACGTTTACGAAGCCATC
ACGTTAACGCGGAAGACCATCGACGGGAAGGTTCCTCTCATCGGATTTGC
AGGGGCTCCAGGTCCTGTTCTTCCAGAACCATTGGTCACACCAGACGATC
TGAAGGCACTGGGCATGACAGTGGAAATGGTTAAAGGAAAGCCATTACGT
CGATTTGATTTGGATGGTTCCATCATTTTCAGCGACATTCTTGTTGTTCC
CCAGAATTTCGAGAAGTACGTTTAGAACATGAATTTTTCAAAGTTTGCCG
AACACGAGAACTGGCTTGTGAAGTGACCATGCAGATGAATGAAATAGACC
AGAAATTTCCACCATTGAAAAATGATTTGTTATTGAAAGCAGCTCGAGGT
GAAGAGGTCTCAAGAATTCCAATATGGGTAATGAGACAAGCTGGAAGGTA
TCTGCCAGTGGACTTTGATGGTTTACATGATAGAAGGTGGAGGTTCCAAA
ACATACTCCAAAGCCAAATCATGGTTGTATAAATATCCAGAGGAGAGTCG
TGATTTGTTGAACTTGTTGTCAACTTTCATTGTCGATTACTTGGTGGAGC
AAGTCAAAGCTGGTGCACAGCGCTTGAACCGTGAAGCAGACGTGAAAGAA
GAGTTGAAATACGTTTACGAAGCCATCACGTTAACGCGGAAGACCATCGA
CGGGAAGGTTCCTCTCATCGGATTTGCAGGGGCTCCAGGTCCTGTTCTTC
CAGAACCATTGGTCACACCAGACGATCTGAAGGCACTGGGCATGACAGTG
GAAATGGTTAAAGGAAAGCCATTACGTCGATTTGATTTGGATGGTTCCAT
CATTTTCAGCGACATTCTTGTTGTTCCCCAGAATTTCGAGAAGTACGTTT
AGAACATGAATTTTTCAAAGTTTGCCGAACACGAGAACTGGCTTGTGAAG
TGACCATGCAGATGAATGAAATAGACCAGAAATTTCCACCATTGAAAAAT
GATTTGTTATTGAAAGCAGCTCGAGGTGAAGAGGTCTCAAGAATTCCAAT
ATGGGTAATGAGACAAGCTGGAAGGTATCTGCCAGTGGACTTTGATGGTT
TACATGATAGAAGGTGGAGGTTCCAAAACATACTCCAAAGCCAAATCATG
GTTGTATAAATATCCAGAGGAGAGTCGTGATTTGTTGAACTTGTTGTCAA
CTTTCATTGTCGATTACTTGGTGGAGCAAGTCAAAGCTGGTGCACAGCGC
TTGAACCGTGAAGCAGACGTGAAAGAAGAGTTGAAATACGTTTACGAAGC
CATCACGTTAACGCGGAAGACCATCGACGGGAAGGTTCCTCTCATCGGAT
TTGCAGGGGCTCCAGGTCCTGTTCTTCCAGAACCATTGGTCACACCAGAC
GATCTGAAGGCACTGGGCATGACAGTGGAAATGGTTAAAGGAAAGCCATT
ACGTCGATTTGATTTGGATGGTTCCATCATTTTCAGCGACATTCTTGTTG
TTCCCCAGAATTTCGAGAAGTACGTTTAGAACATGAATTTTTCAAAGTTT
GCCGAACACGAGAACTGGCTTGTGAAGTGACCATGCAGATGAATGAAATA
GACCAGAAATTTCCACCATTGAAAAATGATTTGTTATTGAAAGCAGCTCG
AGGTGAAGAGGTCTCAAGAATTCCAATATGGGTAATGAGACAAGCTGGAA
GGTATCTGCCAGTGGACTTTGATGGTTTACATGATAGAAGGTGGAGGTTC
CAAAACATACTCCAAAGCCAAATCATGGTTGTATAAATATCCAGAGGAGA
GTCGTGATTTGTTGAACTTGTTGTCAACTTTCATTGTCGATTACTTGGTG
GAGCAAGTCAAAGCTGGTGCACAGCGCTTGAACCGTGAAGCAGACGTGAA
AGAAGAGTTGAAATACGTTTACGAAGCCATCACGTTAACGCGGAAGACCA
TCGACGGGAAGGTTCCTCTCATCGGATTTGCAGGGGCTCCAGGTCCTGTT
CTTCCAGAACCATTGGTCACACCAGACGATCTGAAGGCACTGGGCATGAC
AGTGGAAATGGTTAAAGGAAAGCCATTACGTCGATTTGATTTGGATGGTT
CCATCATTTTCAGCGACATTCTTGTTGTTCCCCAGAATTTCGAGAAGTAC
GTTTAGAACATGAATTTTTCAAAGTTTGCCGAACACGAGAACTGGCTTGT
GAAGTGACCATGCAGATGAATGAAATAGACCAGAAATTTCCACCATTGAA
AAATGATTTGTTATTGAAAGCAGCTCGAGGTGAAGAGGTCTCAAGAATTC
CAATATGGGTAATGAGACAAGCTGGAAGGTATCTGCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029426XLOC_029426Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046078-exon-scaffold_105-1575043694:699428..699475TCONS_00046078-exon-scaffold_105-1575043694:699428..699475Clytia hemisphaericaexon
TCONS_00046078-exon-scaffold_105-1575043694:698876..699014TCONS_00046078-exon-scaffold_105-1575043694:698876..699014Clytia hemisphaericaexon
TCONS_00046078-exon-scaffold_105-1575043694:698375..698454TCONS_00046078-exon-scaffold_105-1575043694:698375..698454Clytia hemisphaericaexon
TCONS_00046078-exon-scaffold_105-1575043694:698126..698188TCONS_00046078-exon-scaffold_105-1575043694:698126..698188Clytia hemisphaericaexon
TCONS_00046078-exon-scaffold_105-1575043694:696795..696830TCONS_00046078-exon-scaffold_105-1575043694:696795..696830Clytia hemisphaericaexon
TCONS_00046078-exon-scaffold_105-1575043694:696241..696285TCONS_00046078-exon-scaffold_105-1575043694:696241..696285Clytia hemisphaericaexon
TCONS_00046078-exon-scaffold_105-1575043694:695783..695899TCONS_00046078-exon-scaffold_105-1575043694:695783..695899Clytia hemisphaericaexon
TCONS_00046078-exon-scaffold_105-1575043694:695406..695567TCONS_00046078-exon-scaffold_105-1575043694:695406..695567Clytia hemisphaericaexon
TCONS_00046078-exon-scaffold_105-1510915933:699428..699475TCONS_00046078-exon-scaffold_105-1510915933:699428..699475Clytia hemisphaericaexon
TCONS_00046078-exon-scaffold_105-1510915933:698876..699014TCONS_00046078-exon-scaffold_105-1510915933:698876..699014Clytia hemisphaericaexon
TCONS_00046078-exon-scaffold_105-1510915933:698375..698454TCONS_00046078-exon-scaffold_105-1510915933:698375..698454Clytia hemisphaericaexon
TCONS_00046078-exon-scaffold_105-1510915933:698126..698188TCONS_00046078-exon-scaffold_105-1510915933:698126..698188Clytia hemisphaericaexon
TCONS_00046078-exon-scaffold_105-1510915933:696795..696830TCONS_00046078-exon-scaffold_105-1510915933:696795..696830Clytia hemisphaericaexon
TCONS_00046078-exon-scaffold_105-1510915933:696241..696285TCONS_00046078-exon-scaffold_105-1510915933:696241..696285Clytia hemisphaericaexon
TCONS_00046078-exon-scaffold_105-1510915933:695783..695899TCONS_00046078-exon-scaffold_105-1510915933:695783..695899Clytia hemisphaericaexon
TCONS_00046078-exon-scaffold_105-1510915933:695406..695567TCONS_00046078-exon-scaffold_105-1510915933:695406..695567Clytia hemisphaericaexon
TCONS_00046078-exon-scaffold_105-1491911889:699428..699475TCONS_00046078-exon-scaffold_105-1491911889:699428..699475Clytia hemisphaericaexon
TCONS_00046078-exon-scaffold_105-1491911889:698876..699014TCONS_00046078-exon-scaffold_105-1491911889:698876..699014Clytia hemisphaericaexon
TCONS_00046078-exon-scaffold_105-1491911889:698375..698454TCONS_00046078-exon-scaffold_105-1491911889:698375..698454Clytia hemisphaericaexon
TCONS_00046078-exon-scaffold_105-1491911889:698126..698188TCONS_00046078-exon-scaffold_105-1491911889:698126..698188Clytia hemisphaericaexon
TCONS_00046078-exon-scaffold_105-1491911889:696795..696830TCONS_00046078-exon-scaffold_105-1491911889:696795..696830Clytia hemisphaericaexon
TCONS_00046078-exon-scaffold_105-1491911889:696241..696285TCONS_00046078-exon-scaffold_105-1491911889:696241..696285Clytia hemisphaericaexon
TCONS_00046078-exon-scaffold_105-1491911889:695783..695899TCONS_00046078-exon-scaffold_105-1491911889:695783..695899Clytia hemisphaericaexon
TCONS_00046078-exon-scaffold_105-1491911889:695406..695567TCONS_00046078-exon-scaffold_105-1491911889:695406..695567Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046078-proteinTCONS_00046078-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:695406..699475 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
166.915	161.042	256.218	265.948	87.0338	65.8671	101.371	108.752	78.3771	114.559	78.9118	47.5998	45.7186	36.0679	43.0551	49.7105	97.2852	77.07	18.3472	29.0446	33.8027	37.0453	83.2167	71.9655	60.8979	63.1844	53.6028	38.4254	57.4699	53.298
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000257Uroporphyrinogen_deCOase
Vocabulary: Biological Process
TermDefinition
GO:0006779porphyrin-containing compound biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0004853uroporphyrinogen decarboxylase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006779 porphyrin-containing compound biosynthetic process
molecular_function GO:0004853 uroporphyrinogen decarboxylase activity
Blast
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BLAST of TCONS_00046078 vs. Swiss-Prot (Human)
Match: DCUP (Uroporphyrinogen decarboxylase OS=Homo sapiens GN=UROD PE=1 SV=2)

HSP 1 Score: 268.085 bits (684), Expect = 6.866e-88
Identity = 129/204 (63.24%), Postives = 150/204 (73.53%), Query Frame = 1 
Query:   79 QKFPPLKNDLLLKAARGEEVSRIPIWVMRQAGRYLPEFREVRLEHEFFKVCRTRELACEVTMQPLRRFDLDGSIIFSDILVVPQALGMTVEMVKGKGPVLPEPLVTPDDLKRLNREADVKEELKYVYEAITLTRKTIDGKVPLIGFAGAPWTLMVYMIEGGGSKTYSKAKSWLYKYPEESRDLLNLLSTFIVDYLVEQVKAGAQ 690
            Q FP LKND  L+AA GEE    P+W MRQAGRYLPEFRE R   +FF  CR+ E  CE+T+QPLRRF LD +IIFSDILVVPQALGM V MV GKGP  PEPL    DL+RL     V  EL YV++AITLTR+ + G+VPLIGFAGAPWTLM YM+EGGGS T ++AK WLY+ P+ S  LL +L+  +V YLV QV AGAQ
Sbjct:    9 QGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAGAQ 212
The following BLAST results are available for this feature:
BLAST of TCONS_00046078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCUP6.866e-8863.24Uroporphyrinogen decarboxylase OS=Homo sapiens GN=... [more]
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