TCONS_00046079 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046079
Unique NameTCONS_00046079
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3077

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046079 ID=TCONS_00046079|Name=TCONS_00046079|organism=Clytia hemisphaerica|type=transcript|length=3077bp
CCAAGGGAAACCCATGAAAGGAAGAAACAAACAACAAGCAGCAGATACTT
CACAAGGAACGCATGAAGTCCGGGAAATTATGACTaccttagtcggccct
aagtgactaaactttggcttggtgactaaaattagggccgactaataNAT
TGTTAAATACAATTTCTCGttggttggaataaaaatgtcctgggcagaaa
attttcgaaaaggaggctaacacaactttccaaatattttttcaaaaaat
caataagcgggggggggagttggaataagaatgtcctgatggaaattttt
tgaaaaattaattagcgccccccggctattaggtacccgagagtaaagaC
ATAATCAGTACAAAAGAATTTCATCACatcacgctaattatgcagatttt
tttaatcaaaaacaaaagaaatccattaaccaaaacaaactcccttaagg
gtAAAGGACCTGACATGTGACGAGCCGTATTCTCATTGTTTTTcgagaag
ctgtttttccatctctaaATTATTCTATGATATTGCAGGGACCAGAATTA
CCTTGGGTTGGAGTCTTGAAGACTTGAGCTTTTCGaaataaaatcgaaat
ttaaacgTACATTTAGATCAATAATCTAGAGTCGAATCGCCCATATATGA
ATTAAAGCCacctatttccaaaaaaaagttgcGCGGCCCATATACCAGAT
TTAAAGGTAGTTATTATCGCGACAGACATTAGAGAATAAGTTATTTCATT
GTTCGTTTTAGAATTCCCTTTTTATCATACGCACAGAAAAATATTATTCT
TATTGAGGACCTCCTTAAGATTGACCTTTCCAAATtgtcttttttacgtt
tttagtgTCAGATTTCTAGCGAAACGCTCAGATTTCGGTTAAAGCTAAAC
AAAAAACTGTCAGTTTTCCCTAATACTGTTTTCTGATTGGCTATGTAATC
TCATGACGTCACTctgaaccaatcaaaatgtTTGTATAAGGACATCAAAT
AGAGAGCTCTTTACCCCTAAAATCTCCGTATAAATGAGGAAGAAAATCAG
agagactaaaaaggagaagTTCAAAATTTAACGAATAAAGCAAAAAGTCG
ATCGATTCTAAAATGGAGAAGTTGACATGGTTTTTAGTCGTTGGATTTGG
ATGTCTTTCAGTGTTGAATTTTGTACAGTATCAAGAGATCAATTCTCGTT
TTGTGGAATTACAACAAAATTCTCAAGGTGAGAAAACCAGGACTCGGAGG
GATGTTGCAAACGATGAAAAGGAGGAGTGGTCTTCGTTCTTTGATCAACA
AAAACTCATCAATTTCATACAGAAGCAATCCAATCAAACAATTTACAAAG
AAGTCAACCAAATCTTGAAACATTTCACATCGAACTTTCCTGCAGAAAAG
TTATGTAAAGATTTATTCAAATGTGAGAAAGAAAAGTGTGAAGATGAAAG
GAGAACAGTGGTTACTGAAGACAAAACTGGCAATGGAAAATCAAGGTGTC
TTCAAGGACCACCAGGGCCTCCGGGTCCACCAGGCCCAGCAGGACCAGGC
CTCGAAGAGCCGAAGCTTGTATCAAGCACATTGAGCCATGGTCAAGTTAA
CATCACAAAAACTAAAGTGTTCGAGTGCAAATTTTATGGTAATCCAATTC
CAGACATTGAATGGAAAGTTCCAGCAAAGAGCTTCGAGGTAGATTCCACA
GTTGACAAAAAAAGATTCGAGATCACGAGTCATTTGACGATACATAACGT
GACTTGGGGTGAACAAGGACGTGTTGAATGCAGTGCTAAAAGTTTGCTTG
GTGAAGCTTATGAATCTGGCAATTTAActgttttaaCAAAGCCACAAATT
CTCAGTAGAGAGACTTTAGTGTTTGCACCTGAAGgaatcactttcgattt
cccaaAATGTGACGTTCAAGCAAATCCACCAGCAAAAATCACATGGAAAA
GAATCTTTTGGCCATTACCAGCCGGTCGTTTCACAGTTCAAGGTGACAAT
CTGAAGATCTCGAATATCCAGTTCAAAGATGAGGGATTTTATGTTTGTGA
AGCTGAAAACTTCCTTGGGAAAACAAAAGCGAATATCCAACTCAAAGTTA
AGGCGATGGAAATCGAAAAATCGTCACCAGCCTTTCTTAAACAAGAAGGA
GGTCAAGTTGCAGAGATCCACTGTTCAGCATACGGAAATAGCCAACGTAT
GTCTGGTAAAATTACCCGAGTAGGATCCAGTGAACTTATTCAAGAAGAGA
CAACTAGAACACCGAACTTGATTTCGGTCAAAGCTTCTGTTCGAGGAGAG
GGAACTTATCGCTGCACGATTAGAAACAACAAGAGCGGAAAACAGGTTGA
AGCTGTTACTCGAGTTGAGAAGGAATGTGGTAGTGGCTGGACCGAGTATT
CAGGGGATTGCTATGCGTACATAAATCAAAAGAAGACATGGTATAATGCA
GAGTTATATTGCATTTCAAAAGGAGGTCACTTGGCAAGTATTAAGAGCAA
GCAGGAGAATGATTTTGTGTATGGATTGACACCTGGCGGACGCAATAATT
ACTGGATAGGTTTGTCTGATAAACAGGTAGAAGGCTCATTCACTCGGTGG
AGTGACGGAAAAACTGCAACATACACGAATTTTGAAAACGGACAGCCAAA
CAATTCTGGAAATCAAGACTGTGTATCATTTTTCGAGGACGCTGCTGAAA
AATGGAATGATTGGGGGTGCAGTAAATCCTTTACTTTCGTATGCAAAATT
TCACAATAAAAATTCTCTGAAGAAACTAAATTGTACATCAGTTAAAATCT
CGCTCCTATTTTACTTAAAGACCAGTTAGATTATTATCagtatttttgga
ttttttcaatttataatTTTACATTTCTTGTTGAAGATAAACAAACTCGA
ACGCAGCTTCTTTACTCCCTTTTTTATGATTCAGAGAGCACTCACGAAAA
AAGAAGGAGATTTTAccacgtccatcagtaaaatcaaataGTGGTGCAGa
tgctctgggtacgagattagAGCAGGGCCCACGCCACGTGGGGGGGTGTC
ATTTGGCAGGGGGCCATGACCCCCCAC
Run BLAST on NCBI

transcript from alignment at scaffold_105:747787..754878-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046079 ID=TCONS_00046079|Name=TCONS_00046079|organism=Clytia hemisphaerica|type=transcript|length=7092bp|location=Sequence derived from alignment at scaffold_105:747787..754878- (Clytia hemisphaerica)
CCAAGGGAAACCCATGAAAGGAAGAAACAAACAACAAGCAGCAGATACTT
CACAAGGAACGCATGAAGTCCGGGAAATTATGACTACCTTAGTCGGCCCT
AAGTGACTAAACTTTGGCTTGGTGACTAAAATTAGGGCCGACTAATANAT
TGTTAAATACAATTTCTCGTTGGTTGGAATAAAAATGTCCTGGGCAGAAA
ATTTTCGAAAAGGAGGCTAACACAACTTTCCAAATATTTTTTCAAAAAAT
CAATAAGCGGGGGGGGGAGTTGGAATAAGAATGTCCTGATGGAAATTTTT
TGAAAAATTAATTAGCGCCCCCCGGCTATTAGGTACCCGAGAGTAAAGAC
ATAATCAGTACAAAAGAATTTCATCACATCACGCTAATTATGCAGATTTT
TTTAATCAAAAACAAAAGAAATCCATTAACCAAAACAAACTCCCTTAAGG
GTAAAGGACCTGACATGTGACGAGCCGTATTCTCATTGTTTTTCGAGAAG
CTGTTTTTCCATCTCTAAATTATTCTATGATATTGCAGGGACCAGAATTA
CCTTGGGTTGGAGTCTTGAAGACTTGAGCTTTTCGAAATAAAATCGAAAT
TTAAACGTACATTTAGATCAATAATCTAGAGTCGAATCGCCCATATATGA
ATTAAAGCCACCTATTTCCAAAAAAAAGTTGCGCGGCCCATATACCAGAT
TTAAAGGTAGTTATTATCGCGACAGACATTAGAGAATAAGTTATTTCATT
GTTCGTTTTAGAATTCCCTTTTTATCATACGCACAGAAAAATATTATTCT
TATTGAGGACCTCCTTAAGATTGACCTTTCCAAATTGTCTTTTTTACGTT
TTTAGTGTCAGATTTCTAGCGAAACGCTCAGATTTCGGTTAAAGCTAAAC
AAAAAACTGTCAGTTTTCCCTAATACTGTTTTCTGATTGGCTATGTAATC
TCATGACGTCACTCTGAACCAATCAAAATGTTTGTATAAGGACATCAAAT
AGAGAGCTCTTTACCCCTAAAATCTCCGTATAAATGAGGAAGAAAATCAG
AGAGACTAAAAAGGAGAAGTTCAAAATTTAACGAATAAAGCAAAAAGTCG
ATCGATTCTAAAATGGAGAAGTTGACATGGTTTTTAGTCGTTGGATTTGG
ATGTCTTTCAGTGTTGAATTTTGTACAGTATCAAGAGATCAATTCTCGTT
TTGTGGAATTACAACAAAATTCTCAAGGTAAATTTGCCTTTTTGAAACTT
TTTTCTTTATTCATAAGATCATTGCAACTAAAGTCTATCTCAAAATGATT
TGCAGCTGAGAAAAAAATGGCTGTAACTTTTGTCTCAGCCATTTTTGTCT
CAGCTGCAAATTATTTTGAGACAGACTTTAGACCAAAATTGCTGTCGAAT
ATGTGCAAGCGAGGGTTTATTAGACATCCTGTATAAAACAGGGTGATGCA
GAAATGTCTAGTCTGGATCACAGACCTCTACAAAACAAACAGCAGTATAG
GAGCACGGATCCGTTTCAAAAAGCTTCAGTTATAAGTGAGCATTTTTGTA
CGGCAGGTGAGAAAACCAGGACTCGGAGGGATGTTGCAAACGATGAAAAT
GAGGATTNTTCGAAAAATACATTTTCAGGTGAGAAAACCAGGACTCGGAG
GGATGTTGCAAACGATGAAAAGGAGGAGTGGTCTTCGTTCTTTGATCAAC
AAAAACTCATCAATTTCATACAGAAGCAATCCAATCAAACAATTTACAAA
GAAGTCAACCAAATCTTGAAACATTTCACATCGAACTTTCCTGCAGAAAA
GTTATGTAAAGATTTATTCAAATGTGAGAAAGGTAAAATGTTTTATCGAT
CTAAACTTATTGAATATCGATCTCTTCCCAATATATGTAAGTTCTCTATA
GACAATTTCTCGTAGACCCGGTAAGACCCCATCTCACTGACAAAATTGGC
AAAAGTACGGGCCCCAGAGGAAAATATTTGTCCTCACTGAAAATAATCAA
ATAAATAAACCCTCTCTGCAAAGTATTGTGCTTTTTTTCCATTCCAGTCA
GTTTTCTGACTTGAAAACAATGGAATTCAAATCCCCAGCAATGAATAAAA
CATGGCATATCAATAAACTCAATCGAGTTATTTTTACCCCCATTGGCTGA
AAAAATCCTACCAGGTCTATGATAAGGAACTGTCTATAATATTTAAATTC
TGAAGATGTTAGTTAATTTCTCTAGAAAAGTGTGAAGATGAAAGGAGAAC
AGTGGTTACTGAAGACAAAACTGGCAATGGAAAATCAAGGTGTCTTCAAG
GACCACCAGGGCCTCCGGTAAGATATCTCTACAAGAGAGAAGGGGCGAAA
ATAAAAAAGATTTTTCTTTGATGAATAATTTTAAAGTTGAATTATTAAAG
TGGGAGAGTGGAGCTTCTACAAAAGAGCTTCTGGGTAGAGATTAAAGGTT
GATTCCTGTGCAGATTTAGAAAGGTATTAGGGTAAATTCAAATTGCATTA
TAATGTTGACTTTTTAAGTAAGTTTGAATAAGTTTTGACACTCATTCACA
CACCTCGTACAGTGCTAACCAAATTATAACCAAATTACAATCAAAGAAAA
ATCACTAAAACTATCATATTCAAATTTATTTATGCGAAAAAATTTTTATC
GAATATAAATCGAATCATTTACATATTTAAAACTAAACCCTTTTTCTAAA
CNGAATATAAATCGAATCATTTACATATTTACATATTTAAAACTAAACCC
CTTTAAAAATCGCTCGTAGAATCTAGACGAACAGGATATTGGATTTAGAC
CTGTAACATTCTTGATACCTTTATTTATATTCATTGACCAAATATTTCAT
AAATCTCAAAACCATTCCTCATTTATTTAATGTTTTTGTTGTTCTGCTCT
GAAGGGTCCACCAGGCCCAGCAGGACCAGGCCTCGAAGAGCCGAAGCTTG
TATCAAGCACATTGAGCCATGGTCAAGTTAACATCACAAAAACTAAAGTG
TTCGAGTGCAAATTTTATGGTAATCCAATTCCAGACATTGAATGGAAAGT
TCCAGCAAAGAGCTTCGAGGTAGATTCCACAGTTGACAAAAAAAGATTCG
AGATCACGAGTCATTTGACGATACATAACGTGACTTGGGGTGAACAAGGA
CGTGTTGAATGCAGTGCTAAAAGTTTGCTTGGTGAAGCTTATGAATCTGG
CAATTTAACTGTTTTAAGTAAAAAACTATAGAGAAATGTCAAGGGATTTT
TAGGGAGTATATGTTGAAAATTTCCANGTTATAGGGATATTATAGAGAAA
TTTCAAGGGATTTTTAGGGAGTATATGTTGAAAATTTCATATGAAAATAA
GTTCATGTCCAAGTGCAAGCAAAAATAAGCACCTCTGAGTTTAAATCTCT
ATATAATTATCGGTGGAATCAATTTTTATGATCATGTCAAATGATCTAAA
AAACTTTATTTGACTAGAATTGGTCCCTGGCAAGATTAGGATTTACATTG
TATTATATTGGGACGAGATGGAGTTTTTACAAGCTCTTATTTGATTTGGT
TGGTTATTAACCAGTAATAAAACAATCTAACAAATCTAATCAACAAACTA
ACACGTCATTTTTATTACTTCAAATGACCAATTATTAAAGTATCTTATAA
AAACTCCATCTCATCTGATCATATTTTTCTGTATACTTTTTTAGCAAAGC
CACAAATTCTCAGTAGAGAGACTTTAGTGTTTGCACCTGAAGGAATCACT
TTCGATTTCCCAAAATGTGACGTTCAAGCAAATCCACCAGCAAAAATCAC
ATGGAAAAGAATCTTTTGGCCATTACCAGCCGGTCGTTTCACAGTTCAAG
GTGACAATCTGAAGATCTCGAATATCCAGTTCAAAGATGAGGGATTTTAT
GTTTGTGAAGCTGAAAACTTCCTTGGTAAGATACAACGGTGAAATTCTCG
TCATCTTAAATTAGATGAACAAACATTTTTCGTTTTGCTCACTTTTTACA
CCCTTAGAGTGCACTTTCACTCATCTTCACTCATCTTCATTTCGTTCCTT
GTAGTCTATTTTTTCTGATTGTGAAAAACATACCCTTAAGGGCCGCACGT
ACGGTAGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCCTCCTTCTGGAGAAATA
AAGGACATAAAATGCTGAAATTTGAGTGAGTCCGTGTGGGGATACCTAAT
CTTGATAATACATAACATTGGATATTCTTATACAATTCATTATTGATTAA
ATTTCAGGGAAAACAAAAGCGAATATCCAACTCAAAGTTAAGGCGATGGA
AATCGAAAAATCGTCACCAGCCTTTCTTAAACAAGAAGGAGGTCAAGTTG
CAGAGATCCACTGTTCAGCATACGGAAATAGCCAACGTATGTCTGGTAAA
ATTACCCGAGTAGGATCCAGTGAACTTATTCAAGAAGAGACAACTAGAAC
ACCGAACTTGATTTCGGTCAAAGCTTCTGTTCGAGGAGAGGGAACTTATC
GCTGCACGATTAGAAACAACAAGAGCGGAAAACAGGTTGAAGCTGTTACT
CGAGTTGAGAGTGAGTAGAAAACTTTTTAGGTGATTTTACTTAGAAAATG
GACCTGTTCAGATCCATTTGTCATGTAAATAGTATAAAATGTCAAAGCTT
TGAAATATTCAATTAAATTGATATGATTTCACACACATAGATATAGTCAT
AAAGTATAAACTAGGTCAAATATGCATCAAAATACTTTTGATTTCTACTT
TTTTTAAAACAGAGGAATGTGGTAGTGGCTGGACCGAGTATTCAGGGGAT
TGCTATGCGTACATAAATCAAAAGAAGACATGGTATAATGCAGAGTTATA
TTGCATTTCAAAAGGAGGTCACTTGGCAAGTATTAAGAGCAAGCAGGAGA
ATGATTTTGTGTATGGATTGACACCTGGCGGACGCAATAATTACTGGATA
GGTAAGTTTAACTAACAAGAGATGATAGGTTGAAAGTTTATTCAGAATTC
AACGAGTATNGGATAGGTAAGTTTAGCTAACAAGAGATGATAGGTTGAAA
GTTTATTCAGAATTCAACGAGTATAAAATAGAAAGTTTTCAGAGTGGCAT
CACCTTCCCGCAGCAGACCCAATGGATAAAATAGCCANGAAATAGAAAGC
TTTCAGAGTGACATCACCTTCCCGCAGCAGACCCAATGGATAAAATAGCC
AAAATATCGTCCCCCAGCCGAAAATCATCCTCACTGCAAAATAATGCGTG
CCATTTTTTCCATCCCCACAAATTATGTTTAAAAATGGAAATTCAAACCC
CCCCTTCGAGTTTCAGTTAGTTATTATCCTTGCTGGTTGAAAAAATCCTA
CCGGGTCTGTAAAAAGGGGTTGTATAGTGTAAAATTTCAATGCTGGACCT
GGAGCCGGGACCTGGAAGCATTCTTATTCTACATATCTTTTAAGGCTTAT
TATAGGAGATGCAGCAAGGAGCAAAGTCGGTGTTCGGTTAACTTTTGTGA
ACGAATCTTTGATATTCTTTTTAAATAATAACCCTTCAAGCAGAGAATCT
ACAGCAACTTTTATGTTCTTTTAGGTTTGTCTGATAAACAGGTAGAAGGC
TCATTCACTCGGTGGAGTGACGGAAAAACTGCAACATACACGAATTTTGA
AAACGGACAGCCAAACAATTCTGGAAATCAAGACTGTGTATCATTTTTCG
AGGACGCTGCTGAAAAATGGAATGATTGGGGGTGCAGTAAATCCTTTACT
TTCGTATGCAAAATTTCACAATAAAAATTCTCTGAAGAAACTAAATTGTA
CATCAGTTAAAATCTCGCTCCTATTTTACTTAAAGACCAGTTAGATTATT
ATCAGTATTTTTGGATTTTTTCAATTTATAATTTTACATTTCTTGTTGAA
GATAAACAAACTCGAACGCAGCTTCTTTACTCCCTTTTTTATGATTCAGA
GAGCACTCACGAAAAAAGAAGGAGATTTTACCACGTCCATCAGTAAAATC
AAATAGTGGTGCAGATGCTCTGGGTACGAGATTAGAGCAGGGCCCACGCC
ACGTGGGGGGGTGTCATTTGGCAGGGGGCCATGACCCCCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029427XLOC_029427Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046079-exon-scaffold_105-1575043694:753652..754878TCONS_00046079-exon-scaffold_105-1575043694:753652..754878Clytia hemisphaericaexon
TCONS_00046079-exon-scaffold_105-1575043694:753047..753250TCONS_00046079-exon-scaffold_105-1575043694:753047..753250Clytia hemisphaericaexon
TCONS_00046079-exon-scaffold_105-1575043694:752562..752653TCONS_00046079-exon-scaffold_105-1575043694:752562..752653Clytia hemisphaericaexon
TCONS_00046079-exon-scaffold_105-1575043694:751662..751974TCONS_00046079-exon-scaffold_105-1575043694:751662..751974Clytia hemisphaericaexon
TCONS_00046079-exon-scaffold_105-1575043694:750954..751184TCONS_00046079-exon-scaffold_105-1575043694:750954..751184Clytia hemisphaericaexon
TCONS_00046079-exon-scaffold_105-1575043694:749319..749621TCONS_00046079-exon-scaffold_105-1575043694:749319..749621Clytia hemisphaericaexon
TCONS_00046079-exon-scaffold_105-1575043694:748928..749116TCONS_00046079-exon-scaffold_105-1575043694:748928..749116Clytia hemisphaericaexon
TCONS_00046079-exon-scaffold_105-1575043694:747787..748304TCONS_00046079-exon-scaffold_105-1575043694:747787..748304Clytia hemisphaericaexon
TCONS_00046079-exon-scaffold_105-1510915933:753652..754878TCONS_00046079-exon-scaffold_105-1510915933:753652..754878Clytia hemisphaericaexon
TCONS_00046079-exon-scaffold_105-1510915933:753047..753250TCONS_00046079-exon-scaffold_105-1510915933:753047..753250Clytia hemisphaericaexon
TCONS_00046079-exon-scaffold_105-1510915933:752562..752653TCONS_00046079-exon-scaffold_105-1510915933:752562..752653Clytia hemisphaericaexon
TCONS_00046079-exon-scaffold_105-1510915933:751662..751974TCONS_00046079-exon-scaffold_105-1510915933:751662..751974Clytia hemisphaericaexon
TCONS_00046079-exon-scaffold_105-1510915933:750954..751184TCONS_00046079-exon-scaffold_105-1510915933:750954..751184Clytia hemisphaericaexon
TCONS_00046079-exon-scaffold_105-1510915933:749319..749621TCONS_00046079-exon-scaffold_105-1510915933:749319..749621Clytia hemisphaericaexon
TCONS_00046079-exon-scaffold_105-1510915933:748928..749116TCONS_00046079-exon-scaffold_105-1510915933:748928..749116Clytia hemisphaericaexon
TCONS_00046079-exon-scaffold_105-1510915933:747787..748304TCONS_00046079-exon-scaffold_105-1510915933:747787..748304Clytia hemisphaericaexon
TCONS_00046079-exon-scaffold_105-1491911889:753652..754878TCONS_00046079-exon-scaffold_105-1491911889:753652..754878Clytia hemisphaericaexon
TCONS_00046079-exon-scaffold_105-1491911889:753047..753250TCONS_00046079-exon-scaffold_105-1491911889:753047..753250Clytia hemisphaericaexon
TCONS_00046079-exon-scaffold_105-1491911889:752562..752653TCONS_00046079-exon-scaffold_105-1491911889:752562..752653Clytia hemisphaericaexon
TCONS_00046079-exon-scaffold_105-1491911889:751662..751974TCONS_00046079-exon-scaffold_105-1491911889:751662..751974Clytia hemisphaericaexon
TCONS_00046079-exon-scaffold_105-1491911889:750954..751184TCONS_00046079-exon-scaffold_105-1491911889:750954..751184Clytia hemisphaericaexon
TCONS_00046079-exon-scaffold_105-1491911889:749319..749621TCONS_00046079-exon-scaffold_105-1491911889:749319..749621Clytia hemisphaericaexon
TCONS_00046079-exon-scaffold_105-1491911889:748928..749116TCONS_00046079-exon-scaffold_105-1491911889:748928..749116Clytia hemisphaericaexon
TCONS_00046079-exon-scaffold_105-1491911889:747787..748304TCONS_00046079-exon-scaffold_105-1491911889:747787..748304Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:747787..754878 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.862867	0.877578	0.662822	0.466092	0.277829	0.804484	0.899883	1.21269	2.92154	2.56616	3.22812	2.83085	21.472	20.0409	30.93	35.6961	8.96495	11.9288	10.3607	14.6485	5.17765	5.24737	9.84232	10.4764	10.9903	4.67363	3.6435	5.72926	46.4097	46.5304
Blast
[Close]
BLAST of TCONS_00046079 vs. Swiss-Prot (Human)
Match: CSPG2 (Versican core protein OS=Homo sapiens GN=VCAN PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 6.266e-22
Identity = 58/155 (37.42%), Postives = 77/155 (49.68%), Query Frame = 3 
Query: 2289 VRGEGTYRCTIRNNKSGKQVEAVTRVEKECGSGWTEYSGDCYAYINQKKTWYNAELYCISKGGHLASIKSKQENDFVYGLTPGGRNNYWIGLSDKQVEGSFTRWSDGKTATYTNFENGQPNN--SGNQDCVSFFEDAAEKWNDWGCSKSFTFVCK 2747
            V G  T+RC    +  G   E  T     C  GW ++ G CY Y   ++TW  AE  C  +G HL SI S +E  FV  +   G +  WIGL+DK  E  F RW+DG T  Y N+   QP++  S  +DCV        +WND  C+   T+ CK
Sbjct: 3143 VDGFNTFRCLCLPSYVGALCEQDTET---CDYGWHKFQGQCYKYFAHRRTWDAAERECRLQGAHLTSILSHEEQMFVNRV---GHDYQWIGLNDKMFEHDF-RWTDGSTLQYENWRPNQPDSFFSAGEDCVVIIWHENGQWNDVPCNYHLTYTCK 3290
The following BLAST results are available for this feature:
BLAST of TCONS_00046079 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CSPG26.266e-2237.42Versican core protein OS=Homo sapiens GN=VCAN PE=1... [more]
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