TCONS_00046092 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046092
Unique NameTCONS_00046092
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046092 ID=TCONS_00046092|Name=TCONS_00046092|organism=Clytia hemisphaerica|type=transcript|length=367bp
attctacagacGTCCGTAGgattaagaaaatttatacatctacttatttt
gtagattttctagTGAGACTGGCCTGCAGGATCACATGCATTAGATATTT
TGTGCTGAATCGAACAGTTGACAACATCAGAAATTCCAACTACACATGCG
TGATTTTAAGGGATGTTATTTTACGTTTCCCACTACCTTGAAACAAAATG
ATTCCACCGTGTGATTTTCACTTTCTCAACCGTGtgatttgatgactttt
ttCCTGTGACAAGTAGTCAAATCTTGTCAAATGATTACTGGATGTATTTG
TTCAAATTTAgtaattgtttcattttcatccCATTCACTTTATTCGCCAT
TTACATAATCAGGACGA
Run BLAST on NCBI

transcript from alignment at scaffold_105:59386..59752

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046092 ID=TCONS_00046092|Name=TCONS_00046092|organism=Clytia hemisphaerica|type=transcript|length=367bp|location=Sequence derived from alignment at scaffold_105:59386..59752 (Clytia hemisphaerica)
TCGTCCTGATTATGTAAATGGCGAATAAAGTGAATGggatgaaaatgaaa
caattacTAAATTTGAACAAATACATCCAGTAATCATTTGACAAGATTTG
ACTACTTGTCACAGGaaaaaagtcatcaaatcaCACGGTTGAGAAAGTGA
AAATCACACGGTGGAATCATTTTGTTTCAAGGTAGTGGGAAACGTAAAAT
AACATCCCTTAAAATCACGCATGTGTAGTTGGAATTTCTGATGTTGTCAA
CTGTTCGATTCAGCACAAAATATCTAATGCATGTGATCCTGCAGGCCAGT
CTCActagaaaatctacaaaataagtagatgtataaattttcttaatcCT
ACGGACgtctgtagaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029436XLOC_029436Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046092-exon-scaffold_105-1491911889:59386..59752TCONS_00046092-exon-scaffold_105-1491911889:59386..59752Clytia hemisphaericaexon
TCONS_00046092-exon-scaffold_105-1510915933:59386..59752TCONS_00046092-exon-scaffold_105-1510915933:59386..59752Clytia hemisphaericaexon
TCONS_00046092-exon-scaffold_105-1575043694:59386..59752TCONS_00046092-exon-scaffold_105-1575043694:59386..59752Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:59386..59752 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.673628	0.218964	0.508477	0.248733	7.18089	4.46662	3.46422	4.05395	2.0814	2.81252	0.454984	1.49544	1.04535	0.310174	0.637514	0.54732	0.50569	1.38218	1.19347	0.249776	0.651302	1.01058	0	0.46813	0.723245	3.44255	0.307893	0.328591	0.249225	0.522146
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046092 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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