TCONS_00046105 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046105
Unique NameTCONS_00046105
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length307

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046105 ID=TCONS_00046105|Name=TCONS_00046105|organism=Clytia hemisphaerica|type=transcript|length=307bp
gagaaagaggaaaaactcgataacccaaatttatctggtcgccggtcgtg
gtcgctggtcgtggtcgccatttctggtcgatgtttagaaactccctggT
GTTTTCCTTTACACACAAAACATTTCATATTCGTTCGACATTGTTTTGAT
GAATGACCGATCTTGAAGCAACAAAAGCAACGTCTTTCCTTTATTATTAT
AGACTTTCTGATTTCTTTATTCTCTACTATATCACAATATTGTTCTTTGT
GATTTCGTTTACAAAAGATGCATTGTTTTCGCTCACTTGTCTTCGTAGAG
AGATTNN
Run BLAST on NCBI

protein sequence of TCONS_00046105-protein

>TCONS_00046105-protein ID=TCONS_00046105-protein|Name=TCONS_00046105-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
NLSTKTSERKQCIFCKRNHKEQYCDIVENKEIRKSIIIKERRCFCCFKIG
HSSKQCRTNMKCFVCKGKHQGVSKHRPEMATTTSDHDRRPDKFGLSSFSS
F
Run BLAST on NCBI

transcript from alignment at scaffold_105:353016..353322

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046105 ID=TCONS_00046105|Name=TCONS_00046105|organism=Clytia hemisphaerica|type=transcript|length=307bp|location=Sequence derived from alignment at scaffold_105:353016..353322 (Clytia hemisphaerica)
NNAATCTCTCTACGAAGACAAGTGAGCGAAAACAATGCATCTTTTGTAAA
CGAAATCACAAAGAACAATATTGTGATATAGTAGAGAATAAAGAAATCAG
AAAGTCTATAATAATAAAGGAAAGACGTTGCTTTTGTTGCTTCAAGATCG
GTCATTCATCAAAACAATGTCGAACGAATATGAAATGTTTTGTGTGTAAA
GGAAAACAccagggagtttctaaacatcgaccagaaatggcgaccacgac
cagcgaccacgaccggcgaccagataaatttgggttatcgagtttttcct
ctttctc

Coding sequence (CDS) from alignment at scaffold_105:353016..353322

>TCONS_00046105 ID=TCONS_00046105|Name=TCONS_00046105|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_105:353016..353322 (Clytia hemisphaerica)
AATCTCTCTACGAAGACAAGTGAGCGAAAACAATGCATCTTTTGTAAACG
AAATCACAAAGAACAATATTGTGATATAGTAGAGAATAAAGAAATCAGAA
AGTCTATAATAATAAAGGAAAGACGTTGCTTTTGTTGCTTCAAGATCGGT
CATTCATCAAAACAATGTCGAACGAATATGAAATGTTTTGTGTGTAAAGG
AAAACAccagggagtttctaaacatcgaccagaaatggcgaccacgacca
gcgaccacgaccggcgaccagataaatttgggttatcgagtttttcctct
ttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029449XLOC_029449Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046105-proteinTCONS_00046105-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046105-exon-scaffold_105-1491911889:353016..353322TCONS_00046105-exon-scaffold_105-1491911889:353016..353322Clytia hemisphaericaexon
TCONS_00046105-exon-scaffold_105-1510915933:353016..353322TCONS_00046105-exon-scaffold_105-1510915933:353016..353322Clytia hemisphaericaexon
TCONS_00046105-exon-scaffold_105-1575043694:353016..353322TCONS_00046105-exon-scaffold_105-1575043694:353016..353322Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:353016..353322 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.09957	5.13064	5.85062	5.92263	1.22109	1.48821	2.54804	3.27418	13.8869	14.4672	7.24722	3.22317	5.20806	3.75554	3.79505	6.53319	4.60885	5.72943	3.78793	3.05296	4.23063	6.95339	3.94588	2.24865	5.79562	6.42849	5.45006	8.80117	8.64043	7.26492
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046105 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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