TCONS_00046107 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046107
Unique NameTCONS_00046107
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length515

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046107 ID=TCONS_00046107|Name=TCONS_00046107|organism=Clytia hemisphaerica|type=transcript|length=515bp
GAGAGGAGAAGATAGCATGGTAGACGTTGATAAGGTTTGGAAGAGGGAGA
TAGTGACGGAGTTTAGAGATAGCCCCATTTGCACGACGAAGTTTGGCAGT
AACAACAGCAACATGTTGTTTCCAAGAGAGGTGTTCATCAAGATGGACAC
CTAGATATTTGATGATTTTACTTGGAGTTAAGCGCTTACCCAAGATTTCG
ATTTTCGGGATAGTATCAAGACGGCGCCTATTGGACCTAAAGATGATAAA
TTCGGTCTTGCTAGCGTTAAGCGATATTTTGTTAGCATTCAGCCAGCTAA
CAAGAACTCTGAGATCAGAGTTCACTCTCCCACACAGAGACCAGACAGTT
TGAGAGAGATTTAGTAGATGAGTGTCGTCGGCAAAGTGATAGGTTTCTGA
GGTTCTGATACAGTAATGGAGATCATTAATGTATACAAGAAATAATAGAG
GACCCAGGACAGAGCCCTGAGGTACACCGTGTTTAATtggtttatgtttt
gattttgttcccGAG
Run BLAST on NCBI

protein sequence of TCONS_00046107-protein

>TCONS_00046107-protein ID=TCONS_00046107-protein|Name=TCONS_00046107-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
SGTKSKHKPIKHGVPQGSVLGPLLFLVYINDLHYCIRTSETYHFADDTHL
LNLSQTVWSLCGRVNSDLRVLVSWLNANKISLNASKTEFIIFRSNRRRLD
TIPKIEILGKRLTPSKIIKYLGVHLDEHLSWKQHVAVVTAKLRRANGAIS
KLRHYLPLPNLINVYHAIFSS
Run BLAST on NCBI

transcript from alignment at scaffold_105:381485..381999

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046107 ID=TCONS_00046107|Name=TCONS_00046107|organism=Clytia hemisphaerica|type=transcript|length=515bp|location=Sequence derived from alignment at scaffold_105:381485..381999 (Clytia hemisphaerica)
CTCgggaacaaaatcaaaacataaaccaATTAAACACGGTGTACCTCAGG
GCTCTGTCCTGGGTCCTCTATTATTTCTTGTATACATTAATGATCTCCAT
TACTGTATCAGAACCTCAGAAACCTATCACTTTGCCGACGACACTCATCT
ACTAAATCTCTCTCAAACTGTCTGGTCTCTGTGTGGGAGAGTGAACTCTG
ATCTCAGAGTTCTTGTTAGCTGGCTGAATGCTAACAAAATATCGCTTAAC
GCTAGCAAGACCGAATTTATCATCTTTAGGTCCAATAGGCGCCGTCTTGA
TACTATCCCGAAAATCGAAATCTTGGGTAAGCGCTTAACTCCAAGTAAAA
TCATCAAATATCTAGGTGTCCATCTTGATGAACACCTCTCTTGGAAACAA
CATGTTGCTGTTGTTACTGCCAAACTTCGTCGTGCAAATGGGGCTATCTC
TAAACTCCGTCACTATCTCCCTCTTCCAAACCTTATCAACGTCTACCATG
CTATCTTCTCCTCTC

Coding sequence (CDS) from alignment at scaffold_105:381485..381999

>TCONS_00046107 ID=TCONS_00046107|Name=TCONS_00046107|organism=Clytia hemisphaerica|type=CDS|length=513bp|location=Sequence derived from alignment at scaffold_105:381485..381999 (Clytia hemisphaerica)
TCgggaacaaaatcaaaacataaaccaATTAAACACGGTGTACCTCAGGG
CTCTGTCCTGGGTCCTCTATTATTTCTTGTATACATTAATGATCTCCATT
ACTGTATCAGAACCTCAGAAACCTATCACTTTGCCGACGACACTCATCTA
CTAAATCTCTCTCAAACTGTCTGGTCTCTGTGTGGGAGAGTGAACTCTGA
TCTCAGAGTTCTTGTTAGCTGGCTGAATGCTAACAAAATATCGCTTAACG
CTAGCAAGACCGAATTTATCATCTTTAGGTCCAATAGGCGCCGTCTTGAT
ACTATCCCGAAAATCGAAATCTTGGGTAAGCGCTTAACTCCAAGTAAAAT
CATCAAATATCTAGGTGTCCATCTTGATGAACACCTCTCTTGGAAACAAC
ATGTTGCTGTTGTTACTGCCAAACTTCGTCGTGCAAATGGGGCTATCTCT
AAACTCCGTCACTATCTCCCTCTTCCAAACCTTATCAACGTCTACCATGC
TATCTTCTCCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029451XLOC_029451Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046107-proteinTCONS_00046107-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046107-exon-scaffold_105-1491911889:381485..381999TCONS_00046107-exon-scaffold_105-1491911889:381485..381999Clytia hemisphaericaexon
TCONS_00046107-exon-scaffold_105-1510915933:381485..381999TCONS_00046107-exon-scaffold_105-1510915933:381485..381999Clytia hemisphaericaexon
TCONS_00046107-exon-scaffold_105-1575043694:381485..381999TCONS_00046107-exon-scaffold_105-1575043694:381485..381999Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:381485..381999 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.11594	0.45224	0.586573	0.770584	4.06515	2.54326	1.19248	2.31167	0.488503	0.242036	2.29098	0.231647	0.154217	1.34406	0.699216	0.565206	1.34513	1.07051	1.43601	0.594988	1.20129	0.656128	0.132935	0.286947	0.835731	0.333286	1.12417	1.01799	0.567249	0.524438
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046107 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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