TCONS_00046113 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046113
Unique NameTCONS_00046113
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length435

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046113 ID=TCONS_00046113|Name=TCONS_00046113|organism=Clytia hemisphaerica|type=transcript|length=435bp
CGCTAAATTTGAATTCCCTAACTATAATGTCTATTAAGGGGACTTTTATT
ATAGGACTAAAGATTATGTTTACACAGGTTTACACTTGCTATATTCAACT
TTTATTGAATTGTCTTGGGATAAACTTCATCAAGGTAAccctcatccttg
ttgttgcaaaatACACCATATAGAATAGATGGCTGATATTGTTCCTGAAa
ccttgatttcctagtgtgactaactgacattCCTGCAAAACCAGTTAAAA
AACAAATATACTAGGGGTCAGTTCAGGGTTAAGGAATCTGTGGGAGGCTA
ACTCGTGACTGttaaatgtctttaaaacatgtttaaagccacTGCATCCT
GTTGCAAGTTGGGGACTCCAGACTTTTTTTTTGGGCTTTTGGGTAGTTCT
TAGTGTTTGTATTTTTGTGCTTTCTGTGTTTATGT
Run BLAST on NCBI

transcript from alignment at scaffold_105:496058..496492

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046113 ID=TCONS_00046113|Name=TCONS_00046113|organism=Clytia hemisphaerica|type=transcript|length=435bp|location=Sequence derived from alignment at scaffold_105:496058..496492 (Clytia hemisphaerica)
ACATAAACACAGAAAGCACAAAAATACAAACACTAAGAACTACCCAAAAG
CCCAAAAAAAAAGTCTGGAGTCCCCAACTTGCAACAGGATGCAgtggctt
taaacatgttttaaagacatttaaCAGTCACGAGTTAGCCTCCCACAGAT
TCCTTAACCCTGAACTGACCCCTAGTATATTTGTTTTTTAACTGGTTTTG
CAGGaatgtcagttagtcacactaggaaatcaaggtTTCAGGAACAATAT
CAGCCATCTATTCTATATGGTGTattttgcaacaacaaggatgagggTTA
CCTTGATGAAGTTTATCCCAAGACAATTCAATAAAAGTTGAATATAGCAA
GTGTAAACCTGTGTAAACATAATCTTTAGTCCTATAATAAAAGTCCCCTT
AATAGACATTATAGTTAGGGAATTCAAATTTAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029457XLOC_029457Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046113-exon-scaffold_105-1491911889:496058..496492TCONS_00046113-exon-scaffold_105-1491911889:496058..496492Clytia hemisphaericaexon
TCONS_00046113-exon-scaffold_105-1510915933:496058..496492TCONS_00046113-exon-scaffold_105-1510915933:496058..496492Clytia hemisphaericaexon
TCONS_00046113-exon-scaffold_105-1575043694:496058..496492TCONS_00046113-exon-scaffold_105-1575043694:496058..496492Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:496058..496492 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.313962	0.765407	1.06645	0.347786	0.635094	0.50186	0.605472	0.944726	0.52914	0.655425	1.1133	0.627291	0.626419	0.216848	0.0891391	0.28698	0.589226	0.362362	0	0.349244	0.303557	0.444193	0	0.327277	0.842719	2.25632	0.215252	0.229723	0.348474	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046113 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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