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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046116 ID=TCONS_00046116|Name=TCONS_00046116|organism=Clytia hemisphaerica|type=transcript|length=904bp
GTCACAATCCGGTGGATTCCGTTTCTACTTCTTTGCTGTTCCTCAATGTG
GAATTCTCATTCTGTGAAATGTTTGTCTGATTGATTCTGTAGATTGAAAG
GCGTTCCATCGAGCGCCTCAATCGGCCGCGCGTTGTCGGTTTAAGCGCGA
TGTAGATCAGTGCATCCACGATGACGTTAATATAGTAGAAGAGGAATAGA
AATTTGGGGAGAGATTGTTGAAAGAAAACGGAGACGAAATCTGGAATGCT
GATGAAGATGATGAACGTTGCTACAATGAGAAACGGGATGTAAATTCGAG
GTCGTTTTGTGATGTGACGTTCGCGTGTGTAACGGACCGCACGAAATTTG
TTGAAGATGTATGAATACACTAAAATGAACTCCAAAATGACAATGAATGT
TAAAATCATGGATAGGATTCTGCATCCTTGCTTAATTGTTGCTATGGAGA
CAGTTTTCTTGACGTAAAGGACGAGGAGAGGAATCGCGAAAACAACACCA
GTGAACCAAGTTGTCAcgcaaaacaaaaattgttttctcTGGAACCAGCA
CCGATAGTATCTCATATGAAAATAGACTTCCAAAAAACGTTGCATTGTCA
GCAAAAACATTCCAAAATAAAATGGTATCCCAATCGCGTATGTAATgata
tccataatggcggatcgAGATATGACGTCACCGATTTCAAAATGCTGGAG
AAAGCAACGAACAATGTTTTGCAGACTGAATAAAATGTCTGAGACACTGA
GGTTGATCAAGAGAAGGATTCCTTTTGAACGTTGCCAGTTCTTTCTGTGT
TCCGTCACCAAAAGAACGATTCCTGCGACGTGAACTAAAATTCCAATGAT
TGATAAACAAAGCGAAATGATTCGAAAATTATCCATTCTCTCCTCAAATT
AGTT Run BLAST on NCBI protein sequence of TCONS_00046116-protein >TCONS_00046116-protein ID=TCONS_00046116-protein|Name=TCONS_00046116-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
MDNFRIISLCLSIIGILVHVAGIVLLVTEHRKNWQRSKGILLLINLSVSD
ILFSLQNIVRCFLQHFEIGDVISRSAIMDIITYAIGIPFYFGMFLLTMQR
FLEVYFHMRYYRCWFQRKQFLFCVTTWFTGVVFAIPLLVLYVKKTVSIAT
IKQGCRILSMILTFIVILEFILVYSYIFNKFRAVRYTRERHITKRPRIYI
PFLIVATFIIFISIPDFVSVFFQQSLPKFLFLFYYINVIVDALIYIALKP
TTRGRLRRSMERLSIYRINQTNISQNENSTLRNSKEVETESTGL Run BLAST on NCBI transcript from alignment at scaffold_105:647388..648291 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046116 ID=TCONS_00046116|Name=TCONS_00046116|organism=Clytia hemisphaerica|type=transcript|length=904bp|location=Sequence derived from alignment at scaffold_105:647388..648291 (Clytia hemisphaerica)
AACTAATTTGAGGAGAGAATGGATAATTTTCGAATCATTTCGCTTTGTTT
ATCAATCATTGGAATTTTAGTTCACGTCGCAGGAATCGTTCTTTTGGTGA
CGGAACACAGAAAGAACTGGCAACGTTCAAAAGGAATCCTTCTCTTGATC
AACCTCAGTGTCTCAGACATTTTATTCAGTCTGCAAAACATTGTTCGTTG
CTTTCTCCAGCATTTTGAAATCGGTGACGTCATATCTcgatccgccatta
tggatatcATTACATACGCGATTGGGATACCATTTTATTTTGGAATGTTT
TTGCTGACAATGCAACGTTTTTTGGAAGTCTATTTTCATATGAGATACTA
TCGGTGCTGGTTCCAgagaaaacaatttttgttttgcgTGACAACTTGGT
TCACTGGTGTTGTTTTCGCGATTCCTCTCCTCGTCCTTTACGTCAAGAAA
ACTGTCTCCATAGCAACAATTAAGCAAGGATGCAGAATCCTATCCATGAT
TTTAACATTCATTGTCATTTTGGAGTTCATTTTAGTGTATTCATACATCT
TCAACAAATTTCGTGCGGTCCGTTACACACGCGAACGTCACATCACAAAA
CGACCTCGAATTTACATCCCGTTTCTCATTGTAGCAACGTTCATCATCTT
CATCAGCATTCCAGATTTCGTCTCCGTTTTCTTTCAACAATCTCTCCCCA
AATTTCTATTCCTCTTCTACTATATTAACGTCATCGTGGATGCACTGATC
TACATCGCGCTTAAACCGACAACGCGCGGCCGATTGAGGCGCTCGATGGA
ACGCCTTTCAATCTACAGAATCAATCAGACAAACATTTCACAGAATGAGA
ATTCCACATTGAGGAACAGCAAAGAAGTAGAAACGGAATCCACCGGATTG
TGAC Coding sequence (CDS) from alignment at scaffold_105:647388..648291 >TCONS_00046116 ID=TCONS_00046116|Name=TCONS_00046116|organism=Clytia hemisphaerica|type=CDS|length=885bp|location=Sequence derived from alignment at scaffold_105:647388..648291 (Clytia hemisphaerica)
ATGGATAATTTTCGAATCATTTCGCTTTGTTTATCAATCATTGGAATTTT
AGTTCACGTCGCAGGAATCGTTCTTTTGGTGACGGAACACAGAAAGAACT
GGCAACGTTCAAAAGGAATCCTTCTCTTGATCAACCTCAGTGTCTCAGAC
ATTTTATTCAGTCTGCAAAACATTGTTCGTTGCTTTCTCCAGCATTTTGA
AATCGGTGACGTCATATCTcgatccgccattatggatatcATTACATACG
CGATTGGGATACCATTTTATTTTGGAATGTTTTTGCTGACAATGCAACGT
TTTTTGGAAGTCTATTTTCATATGAGATACTATCGGTGCTGGTTCCAgag
aaaacaatttttgttttgcgTGACAACTTGGTTCACTGGTGTTGTTTTCG
CGATTCCTCTCCTCGTCCTTTACGTCAAGAAAACTGTCTCCATAGCAACA
ATTAAGCAAGGATGCAGAATCCTATCCATGATTTTAACATTCATTGTCAT
TTTGGAGTTCATTTTAGTGTATTCATACATCTTCAACAAATTTCGTGCGG
TCCGTTACACACGCGAACGTCACATCACAAAACGACCTCGAATTTACATC
CCGTTTCTCATTGTAGCAACGTTCATCATCTTCATCAGCATTCCAGATTT
CGTCTCCGTTTTCTTTCAACAATCTCTCCCCAAATTTCTATTCCTCTTCT
ACTATATTAACGTCATCGTGGATGCACTGATCTACATCGCGCTTAAACCG
ACAACGCGCGGCCGATTGAGGCGCTCGATGGAACGCCTTTCAATCTACAG
AATCAATCAGACAAACATTTCACAGAATGAGAATTCCACATTGAGGAACA
GCAAAGAAGTAGAAACGGAATCCACCGGATTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046116-exon-scaffold_105-1491911889:647388..648291 | TCONS_00046116-exon-scaffold_105-1491911889:647388..648291 | Clytia hemisphaerica | exon |
| TCONS_00046116-exon-scaffold_105-1510915933:647388..648291 | TCONS_00046116-exon-scaffold_105-1510915933:647388..648291 | Clytia hemisphaerica | exon |
| TCONS_00046116-exon-scaffold_105-1575043694:647388..648291 | TCONS_00046116-exon-scaffold_105-1575043694:647388..648291 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_105 | supercontig | scaffold_105:647388..648291 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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