TCONS_00046119 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046119
Unique NameTCONS_00046119
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length333

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046119 ID=TCONS_00046119|Name=TCONS_00046119|organism=Clytia hemisphaerica|type=transcript|length=333bp
aaattttgaacattttctaacACCCCATCGTTTATtcgaatttttgattt
tagaatttaGATTGATCAGATTAGCGGTTCTGtgcttgttggaaagataa
taaAGAGTGAATCGAAAAGAAATCTCCAGATATTAGTGAATGCAAATGAT
ACCCCGGTTTTGGAGTTTTTAGGTATAAAAGAGACTCAAACAAATTGCTT
GCTTTAtggataaaatattgaaattgtcaATATACGATAAGTTATATACA
AAGTATAGAGCGAAGTTCAATTACTTTCGCGATTTCTTCCACGAATTGTT
CTCGAGCATGACTGCAGCTGTCCGCCTCTTTCg
Run BLAST on NCBI

transcript from alignment at scaffold_105:755228..755560

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046119 ID=TCONS_00046119|Name=TCONS_00046119|organism=Clytia hemisphaerica|type=transcript|length=333bp|location=Sequence derived from alignment at scaffold_105:755228..755560 (Clytia hemisphaerica)
cGAAAGAGGCGGACAGCTGCAGTCATGCTCGAGAACAATTCGTGGAAGAA
ATCGCGAAAGTAATTGAACTTCGCTCTATACTTTGTATATAACTTATCGT
ATATtgacaatttcaatattttatccaTAAAGCAAGCAATTTGTTTGAGT
CTCTTTTATACCTAAAAACTCCAAAACCGGGGTATCATTTGCATTCACTA
ATATCTGGAGATTTCTTTTCGATTCACTCTttattatctttccaacaagc
aCAGAACCGCTAATCTGATCAATCtaaattctaaaatcaaaaattcgaAT
AAACGATGGGGTgttagaaaatgttcaaaattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029463XLOC_029463Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046119-exon-scaffold_105-1491911889:755228..755560TCONS_00046119-exon-scaffold_105-1491911889:755228..755560Clytia hemisphaericaexon
TCONS_00046119-exon-scaffold_105-1510915933:755228..755560TCONS_00046119-exon-scaffold_105-1510915933:755228..755560Clytia hemisphaericaexon
TCONS_00046119-exon-scaffold_105-1575043694:755228..755560TCONS_00046119-exon-scaffold_105-1575043694:755228..755560Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:755228..755560 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.336572	0	0	0.609774	1.1035	1.03308	0.750063	0.957806	0	0	1.15459	0.842137	0.945004	1.06703	0	0.70201	0	0	0.860022	0.882885	0.346415	0.329871	0.307178	0.274149	0.432627	0.48395	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046119 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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