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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046120 ID=TCONS_00046120|Name=TCONS_00046120|organism=Clytia hemisphaerica|type=transcript|length=874bp
CGCTCTCTAATTTTCCATACTGCGCAAGACGGTATCACTTTTCGTTCCCC
TTGTTGTAGATTATCATAAACCCAGAAAACAAACTGGCGATAGGCAGCAT
AACGAAATGCTTCGTTGGGAATCTTTTGAGGATTCTGGTCTTTATTTGGA
CcattattttgtttgtaatacTTTTTAGCGGTGATTGCTGCTTTTAGAGA
ATGTTTTGAAAGACAGACACTTTCAAAACCAATAGATTCTGAAATACATT
GATTCCCTTCAAAATAGTCATCCTTTATTTCGTTTGTGTCTAAACAGCAC
AAGCTTTCCACCTCTGTTTCCATGACTTTGCAGCTTCCGCAAAGACACCA
GTCTGTATTCCCTTTCCTTGGCTTTTGTTCGTCATTTGAATTATTACTAG
CGATACTTTCTTTTCCTGATATCTCGTCCTCGCTGCAAGACATTTCTTGA
GCACTACAGACAGGCTCAAAGTCAAAAGGTCTCAAACCATCGGGCATGGA
TTCGTCTGAACTTGACTCGTCTGATGACGAAGAGCTTTCTAGATCCGATT
GTTCTGTTTTCGATGTAGGTGAAGGTCCTGGTTCGTTAGGCGTGTTGTCT
GGTGTGTATTCGTCTTCACTTGACAGACATTTTTCTGATAAATCAGAAAT
AGAATACTCCAAGTCCGGACTGTCATTGAAATCGCCATCATCACTTAAAT
CTACAGAATACTGAAGTTGTTCAGTATCTTCTAAAACGTTTTTGACAGTA
CCTCTCTTGTTTCTTTTCATTTTCCAATACTTCTTTGCCAGTAGTAACTT
CACTGTATCTAATCTAATGTAATATATATCAAAATCTGAAGagttttgaa
tatcttttaaatgACTTattgaaa Run BLAST on NCBI protein sequence of TCONS_00046120-protein >TCONS_00046120-protein ID=TCONS_00046120-protein|Name=TCONS_00046120-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
SISHLKDIQNSSDFDIYYIRLDTVKLLLAKKYWKMKRNKRGTVKNVLEDT
EQLQYSVDLSDDGDFNDSPDLEYSISDLSEKCLSSEDEYTPDNTPNEPGP
SPTSKTEQSDLESSSSSDESSSDESMPDGLRPFDFEPVCSAQEMSCSEDE
ISGKESIASNNSNDEQKPRKGNTDWCLCGSCKVMETEVESLCCLDTNEIK
DDYFEGNQCISESIGFESVCLSKHSLKAAITAKKYYKQNNGPNKDQNPQK
IPNEAFRYAAYRQFVFWVYDNLQQGERKVIPSCAVWKIRE Run BLAST on NCBI transcript from alignment at scaffold_105:756362..757235 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046120 ID=TCONS_00046120|Name=TCONS_00046120|organism=Clytia hemisphaerica|type=transcript|length=874bp|location=Sequence derived from alignment at scaffold_105:756362..757235 (Clytia hemisphaerica)
tttcaatAAGTcatttaaaagatattcaaaactCTTCAGATTTTGATATA
TATTACATTAGATTAGATACAGTGAAGTTACTACTGGCAAAGAAGTATTG
GAAAATGAAAAGAAACAAGAGAGGTACTGTCAAAAACGTTTTAGAAGATA
CTGAACAACTTCAGTATTCTGTAGATTTAAGTGATGATGGCGATTTCAAT
GACAGTCCGGACTTGGAGTATTCTATTTCTGATTTATCAGAAAAATGTCT
GTCAAGTGAAGACGAATACACACCAGACAACACGCCTAACGAACCAGGAC
CTTCACCTACATCGAAAACAGAACAATCGGATCTAGAAAGCTCTTCGTCA
TCAGACGAGTCAAGTTCAGACGAATCCATGCCCGATGGTTTGAGACCTTT
TGACTTTGAGCCTGTCTGTAGTGCTCAAGAAATGTCTTGCAGCGAGGACG
AGATATCAGGAAAAGAAAGTATCGCTAGTAATAATTCAAATGACGAACAA
AAGCCAAGGAAAGGGAATACAGACTGGTGTCTTTGCGGAAGCTGCAAAGT
CATGGAAACAGAGGTGGAAAGCTTGTGCTGTTTAGACACAAACGAAATAA
AGGATGACTATTTTGAAGGGAATCAATGTATTTCAGAATCTATTGGTTTT
GAAAGTGTCTGTCTTTCAAAACATTCTCTAAAAGCAGCAATCACCGCTAA
AAAgtattacaaacaaaataatgGTCCAAATAAAGACCAGAATCCTCAAA
AGATTCCCAACGAAGCATTTCGTTATGCTGCCTATCGCCAGTTTGTTTTC
TGGGTTTATGATAATCTACAACAAGGGGAACGAAAAGTGATACCGTCTTG
CGCAGTATGGAAAATTAGAGAGCG Coding sequence (CDS) from alignment at scaffold_105:756362..757235 >TCONS_00046120 ID=TCONS_00046120|Name=TCONS_00046120|organism=Clytia hemisphaerica|type=CDS|length=870bp|location=Sequence derived from alignment at scaffold_105:756362..757235 (Clytia hemisphaerica)
tcaatAAGTcatttaaaagatattcaaaactCTTCAGATTTTGATATATA
TTACATTAGATTAGATACAGTGAAGTTACTACTGGCAAAGAAGTATTGGA
AAATGAAAAGAAACAAGAGAGGTACTGTCAAAAACGTTTTAGAAGATACT
GAACAACTTCAGTATTCTGTAGATTTAAGTGATGATGGCGATTTCAATGA
CAGTCCGGACTTGGAGTATTCTATTTCTGATTTATCAGAAAAATGTCTGT
CAAGTGAAGACGAATACACACCAGACAACACGCCTAACGAACCAGGACCT
TCACCTACATCGAAAACAGAACAATCGGATCTAGAAAGCTCTTCGTCATC
AGACGAGTCAAGTTCAGACGAATCCATGCCCGATGGTTTGAGACCTTTTG
ACTTTGAGCCTGTCTGTAGTGCTCAAGAAATGTCTTGCAGCGAGGACGAG
ATATCAGGAAAAGAAAGTATCGCTAGTAATAATTCAAATGACGAACAAAA
GCCAAGGAAAGGGAATACAGACTGGTGTCTTTGCGGAAGCTGCAAAGTCA
TGGAAACAGAGGTGGAAAGCTTGTGCTGTTTAGACACAAACGAAATAAAG
GATGACTATTTTGAAGGGAATCAATGTATTTCAGAATCTATTGGTTTTGA
AAGTGTCTGTCTTTCAAAACATTCTCTAAAAGCAGCAATCACCGCTAAAA
AgtattacaaacaaaataatgGTCCAAATAAAGACCAGAATCCTCAAAAG
ATTCCCAACGAAGCATTTCGTTATGCTGCCTATCGCCAGTTTGTTTTCTG
GGTTTATGATAATCTACAACAAGGGGAACGAAAAGTGATACCGTCTTGCG
CAGTATGGAAAATTAGAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046120-exon-scaffold_105-1491911889:756362..757235 | TCONS_00046120-exon-scaffold_105-1491911889:756362..757235 | Clytia hemisphaerica | exon |
| TCONS_00046120-exon-scaffold_105-1510915933:756362..757235 | TCONS_00046120-exon-scaffold_105-1510915933:756362..757235 | Clytia hemisphaerica | exon |
| TCONS_00046120-exon-scaffold_105-1575043694:756362..757235 | TCONS_00046120-exon-scaffold_105-1575043694:756362..757235 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_105 | supercontig | scaffold_105:756362..757235 . |
Blast
The following BLAST results are available for this feature:
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