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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046122 ID=TCONS_00046122|Name=TCONS_00046122|organism=Clytia hemisphaerica|type=transcript|length=1528bp
aatttccgaccgaaaaagtctagtttttcaacccgaggtattaaatttac
aaaaacatgtattttcacatcgatttttgaccttttatacaattcccaaa
ctgtttggaaaataaaaattttcccacccaaaaagtcatgttttccaacc
agccttggagaattgtcatttctacattggttttttttcacttgattttt
caagggcattggtttattctacaaaacctatgggtaatttacgttttcca
aatcagctcaAGGTAAttgctcaaatttccaaccttcaattctTGATTGC
AGCAGTCTTGAAGGAACGAGTTTTTCAAATGACCTTTTTCCGATTGTTTG
GTTGGCTCCGTTGCATTTGATTGACGGAGTGTGATAGCCTTTCGATTCCA
TCTGTCGATGAGAGGTGGTGGTAATTTGTCCAATAGCAGTCTGATGGTCT
CTGGTGAATCCAGGACGTTAGAGTGATCACAGTAGAAGGTCTGCCATTTG
GTCAAATGGTTCAGGAATTCGCGAAAACCTTTAGGGTTGCTGAATCGTAA
TGAttgcatattttttatttggttgcGATATGCCGATAAGATCAGATGTG
GATTTCCAAATCTCTTCTTGAGTATATCCAATGCGGAGGAGTAGCCATAT
GCAGACGGTAATTAGATGCAATATTTCATTGCTTCATGAGCTTCAGCTGT
GGTGTACTTCATCAGTCTTGTCAGCCTTTCTCTAGGATTTGGGATTTTTG
ATTCATCTGCTTCCTTGAAAACAGAGATGAAATAGGCATAGTTGAGTGGA
TCTCCATCGTACGATTCGACGTCCACACGTGGTGCCTCTTGTTTTTTCAG
TATGGCAAATAGCAGATCGTTCGTCGACAGCGGTTCAGGAGATGTCCTTT
TTGGTGACGTAAGTAGCGAATAAGTCTCCATGATATCATCCATCGATGAA
GCCTGAAGTGGTAAGCTTGAATGTTGAAACGGTTCGGTGTTAATTGATGT
CATGGAAGGACGTGGATGTGATATCGCAGTTGGGTTCTGCTTGGCTTGAT
GCATGCAAAACGATGAGTACAACTTTGTCTGTTTGGAACATTGAGATGCC
GCAGGTGGCTCCTGCATGGCTTGGGCATTGACGGGTGATTGGTACGTCAT
TAACTGACCAATGTTGAATGTCGCCTCCGGTGGCTCCTGTAAGGCTAGTT
TGATTGACGATAGGTGTCTCCTTGATGGATCGAAATTGATTGATGACGCA
GGTGGCTTCTGCATGGCTTGTCTAATGATTGAAGGTTGATGCGTCTTTGG
TTGATCAAAGCGTGACGCTGCAGGTGGCTCCTGCATGGCTTGTCTGCTGA
TTGGCGATAGAGTCTTTGATGGATCAATGATTGTTGGTGCCACAGGTGGC
TCAAGCTTGGCTTGACTTATGTCAGTTTGATCTTCATTCGAGGTTCTTGT
ACGAAGCACACCAATCCTTGCTGAAGATCAGGCTACCTGACGTTTTGGTT
TTAGTTTCTTTGTCCTTTGAGCATATGG Run BLAST on NCBI protein sequence of TCONS_00046122-protein >TCONS_00046122-protein ID=TCONS_00046122-protein|Name=TCONS_00046122-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
MQEPPAASRFDQPKTHQPSIIRQAMQKPPASSINFDPSRRHLSSIKLALQ
EPPEATFNIGQLMTYQSPVNAQAMQEPPAASQCSKQTKLYSSFCMHQAKQ
NPTAISHPRPSMTSINTEPFQHSSLPLQASSMDDIMETYSLLTSPKRTSP
EPLSTNDLLFAILKKQEAPRVDVESYDGDPLNYAYFISVFKEADESKIPN
PRERLTRLMKYTTAEAHEAMKYCI Run BLAST on NCBI transcript from alignment at scaffold_105:782291..783818 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046122 ID=TCONS_00046122|Name=TCONS_00046122|organism=Clytia hemisphaerica|type=transcript|length=1528bp|location=Sequence derived from alignment at scaffold_105:782291..783818 (Clytia hemisphaerica)
CCATATGCTCAAAGGACAAAGAAACTAAAACCAAAACGTCAGGTAGCCTG
ATCTTCAGCAAGGATTGGTGTGCTTCGTACAAGAACCTCGAATGAAGATC
AAACTGACATAAGTCAAGCCAAGCTTGAGCCACCTGTGGCACCAACAATC
ATTGATCCATCAAAGACTCTATCGCCAATCAGCAGACAAGCCATGCAGGA
GCCACCTGCAGCGTCACGCTTTGATCAACCAAAGACGCATCAACCTTCAA
TCATTAGACAAGCCATGCAGAAGCCACCTGCGTCATCAATCAATTTCGAT
CCATCAAGGAGACACCTATCGTCAATCAAACTAGCCTTACAGGAGCCACC
GGAGGCGACATTCAACATTGGTCAGTTAATGACGTACCAATCACCCGTCA
ATGCCCAAGCCATGCAGGAGCCACCTGCGGCATCTCAATGTTCCAAACAG
ACAAAGTTGTACTCATCGTTTTGCATGCATCAAGCCAAGCAGAACCCAAC
TGCGATATCACATCCACGTCCTTCCATGACATCAATTAACACCGAACCGT
TTCAACATTCAAGCTTACCACTTCAGGCTTCATCGATGGATGATATCATG
GAGACTTATTCGCTACTTACGTCACCAAAAAGGACATCTCCTGAACCGCT
GTCGACGAACGATCTGCTATTTGCCATACTGAAAAAACAAGAGGCACCAC
GTGTGGACGTCGAATCGTACGATGGAGATCCACTCAACTATGCCTATTTC
ATCTCTGTTTTCAAGGAAGCAGATGAATCAAAAATCCCAAATCCTAGAGA
AAGGCTGACAAGACTGATGAAGTACACCACAGCTGAAGCTCATGAAGCAA
TGAAATATTGCATCTAATTACCGTCTGCATATGGCTACTCCTCCGCATTG
GATATACTCAAGAAGAGATTTGGAAATCCACATCTGATCTTATCGGCATA
TCgcaaccaaataaaaaatatgcaaTCATTACGATTCAGCAACCCTAAAG
GTTTTCGCGAATTCCTGAACCATTTGACCAAATGGCAGACCTTCTACTGT
GATCACTCTAACGTCCTGGATTCACCAGAGACCATCAGACTGCTATTGGA
CAAATTACCACCACCTCTCATCGACAGATGGAATCGAAAGGCTATCACAC
TCCGTCAATCAAATGCAACGGAGCCAACCAAACAATCGGAAAAAGGTCAT
TTGAAAAACTCGTTCCTTCAAGACTGCTGCAATCAagaattgaaggttgg
aaatttgagcaaTTACCTtgagctgatttggaaaacgtaaattacccata
ggttttgtagaataaaccaatgcccttgaaaaatcaagtgaaaaaaaacc
aatgtagaaatgacaattctccaaggctggttggaaaacatgactttttg
ggtgggaaaatttttattttccaaacagtttgggaattgtataaaaggtc
aaaaatcgatgtgaaaatacatgtttttgtaaatttaatacctcgggttg
aaaaactagactttttcggtcggaaatt Coding sequence (CDS) from alignment at scaffold_105:782291..783818 >TCONS_00046122 ID=TCONS_00046122|Name=TCONS_00046122|organism=Clytia hemisphaerica|type=CDS|length=675bp|location=Sequence derived from alignment at scaffold_105:782291..783818 (Clytia hemisphaerica)
ATGCAGGAGCCACCTGCAGCGTCACGCTTTGATCAACCAAAGACGCATCA
ACCTTCAATCATTAGACAAGCCATGCAGAAGCCACCTGCGTCATCAATCA
ATTTCGATCCATCAAGGAGACACCTATCGTCAATCAAACTAGCCTTACAG
GAGCCACCGGAGGCGACATTCAACATTGGTCAGTTAATGACGTACCAATC
ACCCGTCAATGCCCAAGCCATGCAGGAGCCACCTGCGGCATCTCAATGTT
CCAAACAGACAAAGTTGTACTCATCGTTTTGCATGCATCAAGCCAAGCAG
AACCCAACTGCGATATCACATCCACGTCCTTCCATGACATCAATTAACAC
CGAACCGTTTCAACATTCAAGCTTACCACTTCAGGCTTCATCGATGGATG
ATATCATGGAGACTTATTCGCTACTTACGTCACCAAAAAGGACATCTCCT
GAACCGCTGTCGACGAACGATCTGCTATTTGCCATACTGAAAAAACAAGA
GGCACCACGTGTGGACGTCGAATCGTACGATGGAGATCCACTCAACTATG
CCTATTTCATCTCTGTTTTCAAGGAAGCAGATGAATCAAAAATCCCAAAT
CCTAGAGAAAGGCTGACAAGACTGATGAAGTACACCACAGCTGAAGCTCA
TGAAGCAATGAAATATTGCATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046122-exon-scaffold_105-1491911889:782291..783818 | TCONS_00046122-exon-scaffold_105-1491911889:782291..783818 | Clytia hemisphaerica | exon |
| TCONS_00046122-exon-scaffold_105-1510915933:782291..783818 | TCONS_00046122-exon-scaffold_105-1510915933:782291..783818 | Clytia hemisphaerica | exon |
| TCONS_00046122-exon-scaffold_105-1575043694:782291..783818 | TCONS_00046122-exon-scaffold_105-1575043694:782291..783818 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_105 | supercontig | scaffold_105:782291..783818 . |
Blast
The following BLAST results are available for this feature:
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