TCONS_00046206 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046206
Unique NameTCONS_00046206
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046206 ID=TCONS_00046206|Name=TCONS_00046206|organism=Clytia hemisphaerica|type=transcript|length=506bp
CACATAACCCTTCCTACAAGAATCACTGATAAATCTAGAACATTGataaa
caatattttcatttctccAACACCTTACTGCACTAGTAGTGGCAATTTCA
TTACTGGAATAGCTGATCACCTTttacaattttgtatttttaataatTCT
CAATTTGATAACTTATCTGATAAAACAAAAGGCTATTACaaagattggaa
aaattttaacCAACAAAATTTCAGTAATACTTTCAATGATTTCAACtggg
aagaaattttaaaaattgatcaaGATGAACCAAATATTTCATTTGATAAC
TTTTACAGCAAACTTACAGAATTGATTAATGAGAATGTAcccattaaaaa
aatttccaaaaagcaaagaaagaaaaaattaaagccATGGGTCACAAATG
GTATATCTACCTCAATGTCAGTCAGagataaacttttaaaaaaatccatC
AATGCTAAAGATCCAATCAATGAAGCTAACCTAcgtcaaaaatacaaatt
ttataG
Run BLAST on NCBI

protein sequence of TCONS_00046206-protein

>TCONS_00046206-protein ID=TCONS_00046206-protein|Name=TCONS_00046206-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
HITLPTRITDKSRTLINNIFISPTPYCTSSGNFITGIADHLLQFCIFNNS
QFDNLSDKTKGYYKDWKNFNQQNFSNTFNDFNWEEILKIDQDEPNISFDN
FYSKLTELINENVPIKKISKKQRKKKLKPWVTNGISTSMSVRDKLLKKSI
NAKDPINEANLRQKYKFY
Run BLAST on NCBI

transcript from alignment at scaffold_106:16938..17443

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046206 ID=TCONS_00046206|Name=TCONS_00046206|organism=Clytia hemisphaerica|type=transcript|length=506bp|location=Sequence derived from alignment at scaffold_106:16938..17443 (Clytia hemisphaerica)
CtataaaatttgtatttttgacgTAGGTTAGCTTCATTGATTGGATCTTT
AGCATTGatggatttttttaaaagtttatctCTGACTGACATTGAGGTAG
ATATACCATTTGTGACCCATggctttaattttttctttctttgctttttg
gaaatttttttaatgggTACATTCTCATTAATCAATTCTGTAAGTTTGCT
GTAAAAGTTATCAAATGAAATATTTGGTTCATCttgatcaatttttaaaa
tttcttcccaGTTGAAATCATTGAAAGTATTACTGAAATTTTGTTGgtta
aaatttttccaatctttGTAATAGCCTTTTGTTTTATCAGATAAGTTATC
AAATTGAGAattattaaaaatacaaaattgtaaAAGGTGATCAGCTATTC
CAGTAATGAAATTGCCACTACTAGTGCAGTAAGGTGTTggagaaatgaaa
atattgtttatCAATGTTCTAGATTTATCAGTGATTCTTGTAGGAAGGGT
TATGTG

Coding sequence (CDS) from alignment at scaffold_106:16938..17443

>TCONS_00046206 ID=TCONS_00046206|Name=TCONS_00046206|organism=Clytia hemisphaerica|type=CDS|length=504bp|location=Sequence derived from alignment at scaffold_106:16938..17443 (Clytia hemisphaerica)
ataaaatttgtatttttgacgTAGGTTAGCTTCATTGATTGGATCTTTAG
CATTGatggatttttttaaaagtttatctCTGACTGACATTGAGGTAGAT
ATACCATTTGTGACCCATggctttaattttttctttctttgctttttgga
aatttttttaatgggTACATTCTCATTAATCAATTCTGTAAGTTTGCTGT
AAAAGTTATCAAATGAAATATTTGGTTCATCttgatcaatttttaaaatt
tcttcccaGTTGAAATCATTGAAAGTATTACTGAAATTTTGTTGgttaaa
atttttccaatctttGTAATAGCCTTTTGTTTTATCAGATAAGTTATCAA
ATTGAGAattattaaaaatacaaaattgtaaAAGGTGATCAGCTATTCCA
GTAATGAAATTGCCACTACTAGTGCAGTAAGGTGTTggagaaatgaaaat
attgtttatCAATGTTCTAGATTTATCAGTGATTCTTGTAGGAAGGGTTA
TGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029505XLOC_029505Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046206-exon-scaffold_106-1491911889:16938..17443TCONS_00046206-exon-scaffold_106-1491911889:16938..17443Clytia hemisphaericaexon
TCONS_00046206-exon-scaffold_106-1510915933:16938..17443TCONS_00046206-exon-scaffold_106-1510915933:16938..17443Clytia hemisphaericaexon
TCONS_00046206-exon-scaffold_106-1575043694:16938..17443TCONS_00046206-exon-scaffold_106-1575043694:16938..17443Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046206-proteinTCONS_00046206-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_106supercontigscaffold_106:16938..17443 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.477815	0.465945	0.676258	0.52929	2.25526	0.381886	0.767883	1.15021	0.201323	0.374056	0	0.238666	0.635559	0	0.135659	0.43675	0.0896734	0.0919124	0	0.265755	0.692968	0.338005	0	0.249039	0	0.686772	1.31036	0.524418	0.132584	0.135082
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046206 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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