TCONS_00046217 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046217
Unique NameTCONS_00046217
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046217 ID=TCONS_00046217|Name=TCONS_00046217|organism=Clytia hemisphaerica|type=transcript|length=276bp
CAATTTGTGACTTTCTTTGTTGTATTTCACAAGAGTAAAATCTGAATGAA
ATTTTGATGGATTtcctttttcatcaaatttggaCATCTCCCCATTAGCG
TTTGGATAGGAAATGTTATGCAGTTTCTGAACAATATCAATTGGTTGGCA
ATTTGACTGTGCACCACAAGCATGATGCAATGCAGATCCTAACGCGTATA
CAGCATCAATAAGAAGATTACTATGAAATTTCAACGAATCGAATTCTTTG
ACCAAGCGTGTTAATGATATAGTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_106:172324..172599

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046217 ID=TCONS_00046217|Name=TCONS_00046217|organism=Clytia hemisphaerica|type=transcript|length=276bp|location=Sequence derived from alignment at scaffold_106:172324..172599 (Clytia hemisphaerica)
CAAACTATATCATTAACACGCTTGGTCAAAGAATTCGATTCGTTGAAATT
TCATAGTAATCTTCTTATTGATGCTGTATACGCGTTAGGATCTGCATTGC
ATCATGCTTGTGGTGCACAGTCAAATTGCCAACCAATTGATATTGTTCAG
AAACTGCATAACATTTCCTATCCAAACGCTAATGGGGAGATGtccaaatt
tgatgaaaaaggaAATCCATCAAAATTTCATTCAGATTTTACTCTTGTGA
AATACAACAAAGAAAGTCACAAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029516XLOC_029516Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046217-exon-scaffold_106-1491911889:172324..172599TCONS_00046217-exon-scaffold_106-1491911889:172324..172599Clytia hemisphaericaexon
TCONS_00046217-exon-scaffold_106-1510915933:172324..172599TCONS_00046217-exon-scaffold_106-1510915933:172324..172599Clytia hemisphaericaexon
TCONS_00046217-exon-scaffold_106-1575043694:172324..172599TCONS_00046217-exon-scaffold_106-1575043694:172324..172599Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_106supercontigscaffold_106:172324..172599 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	1.15521	0	0	0	0	0	0	0	0	5.54858	2.16084	0.888254	2.54195	1.56574	2.00604	1.66287	0	0.504147	0.737716	0	0	0.559835	1.99856	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046217 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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