TCONS_00046270 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046270
Unique NameTCONS_00046270
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length623

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046270 ID=TCONS_00046270|Name=TCONS_00046270|organism=Clytia hemisphaerica|type=transcript|length=623bp
ATCTGAAATTTCTTCTTCCAGGTTTTGATCTAAGTATTATGTATTTTGTA
CGGTTCTTTCTCCTTCCTTGACCGAGTATCACCAACATTTACATAAAATA
ACATTTCATTTCAAACAATTTATTCCTTCAGGTGTTGATCCCAGTATTCG
CGTTGGGTCGTGCTCAAGAGTTATGCATTCTCTTGGAGACGTTCTGGGAC
CGAATGAACATCAAAGTCCCTATCTACTTTTCGACCGGGTTAACCGAAAA
AGCGAACCATTACTACAAGCTATTCATCTCGTGGACAAACCAGAAAATCC
GAAACACATTCGTCCAAAGAAACTTATTCGATTTCAAACATATTAAAGCA
TTTGATCGAAGTTATATTGAAAACCCGGGGCCGATGGTTGTATTTGCGAC
CCCGGGTATGCTTCATGCTGGACTGTCATTACAGATTTTTAAGAAGTGGG
CGCCTGACGAAAATAATATGCTGATTATGCCTGGCTACTGTGTAGTTGGT
ACGGTCGGACATAAAGTTTTGACCGGACAGAAGAAAATTGAGCTAGACAA
GAAGACAGTTATTGATGTCAATATCTCAGTGGAATATTTATCCTTCAGTG
CACACGCAGATGCTTCAGgtaat
Run BLAST on NCBI

protein sequence of TCONS_00046270-protein

>TCONS_00046270-protein ID=TCONS_00046270-protein|Name=TCONS_00046270-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MNIKVPIYFSTGLTEKANHYYKLFISWTNQKIRNTFVQRNLFDFKHIKAF
DRSYIENPGPMVVFATPGMLHAGLSLQIFKKWAPDENNMLIMPGYCVVGT
VGHKVLTGQKKIELDKKTVIDVNISVEYLSFSAHADASGN
Run BLAST on NCBI

transcript from alignment at scaffold_108:3869..4583-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046270 ID=TCONS_00046270|Name=TCONS_00046270|organism=Clytia hemisphaerica|type=transcript|length=715bp|location=Sequence derived from alignment at scaffold_108:3869..4583- (Clytia hemisphaerica)
ATCTGAAATTTCTTCTTCCAGGTTTTGATCTAAGTATTATGTATTTTGTA
CGGTTCTTTCTCCTTCCTTGACCGAGTATCACCAACATTTACATAAAATA
ACATTTCATTTCAAACAATTTATTCCTTCAGGTGTTGATCCCAGTATTCG
CGTTGGGTCGTGCTCAAGAGTTATGCATTCTCTTGGAGACGTTCTGGGAC
CGAATGAACATCAAAGTCCCTATCTACTTTTCGACCGGGTTAACCGAAAA
AGCGAACCATTACTACAAGCTATTCATCTCGTGGACAAACCAGAAAATCC
GAAACACATTCGTCCAAAGAAACTTATTCGATTTCAAACATATTAAAGCA
TTTGATCGAAGTTATATTGAAAACCCGGGGCCGATGGTTGTATTTGCGAC
CCCGGGTATGCTTCNTTATTCGATTTCAAACATATTAAAGCATTTGATCG
AAGTTATATTGAAAACCCGGGGCCGATGGTTGTATTTGCGACCCCGGGTA
TGCTTCATGCTGGACTGTCATTACAGATTTTTAAGAAGTGGGCGCCTGAC
GAAAATAATATGCTGATTATGCCTGGCTACTGTGTAGTTGGTACGGTCGG
ACATAAAGTTTTGACCGGACAGAAGAAAATTGAGCTAGACAAGAAGACAG
TTATTGATGTCAATATCTCAGTGGAATATTTATCCTTCAGTGCACACGCA
GATGCTTCAGGTAAT

Coding sequence (CDS) from alignment at scaffold_108:3869..4583-

>TCONS_00046270 ID=TCONS_00046270|Name=TCONS_00046270|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_108:3869..4583- (Clytia hemisphaerica)
ATATTAAAGCATTTGATCGAAGTTATATTGAAAACCCGGGGCCGATGGTT
GTATTTGCGACCCCGGGTATGCTTCATGCTGGACTGTCATTACAGATTTT
TAAGAAGTGGGCGCCTGACGAAAATAATATGCTGATTATGCCTGGCTACT
GTGTAGTTGGTACGGTCGGACATAAAGTTTTGACCGGACAGAAGAAAATT
GAGCTAGACAAGAAGACAGTTATTGATGTCAATATCTCAGTGGAATATTT
ATCCTTCAGTGCACACGCAGATGCTTCAGGTAATATGAACATCAAAGTCC
CTATCTACTTTTCGACCGGGTTAACCGAAAAAGCGAACCATTACTACAAG
CTATTCATCTCGTGGACAAACCAGAAAATCCGAAACACATTCGTCCAAAG
AAACTTATTCGATTTCAAACATATTAAAGCATTTGATCGAAGTTATATTG
AAAACCCGGGGCCGATGGTTGTATTTGCGACCCCGGGTATGCTTCATGCT
GGACTGTCATTACAGATTTTTAAGAAGTGGGCGCCTGACGAAAATAATAT
GCTGATTATGCCTGGCTACTGTGTAGTTGGTACGGTCGGACATAAAGTTT
TGACCGGACAGAAGAAAATTGAGCTAGACAAGAAGACAGTTATTGATGTC
AATATCTCAGTGGAATATTTATCCTTCAGTGCACACGCAGATGCTTCAGG
TAATATGAACATCAAAGTCCCTATCTACTTTTCGACCGGGTTAACCGAAA
AAGCGAACCATTACTACAAGCTATTCATCTCGTGGACAAACCAGAAAATC
CGAAACACATTCGTCCAAAGAAACTTATTCGATTTCAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029548XLOC_029548Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046270-proteinTCONS_00046270-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046270-exon-scaffold_108-1575043694:4245..4583TCONS_00046270-exon-scaffold_108-1575043694:4245..4583Clytia hemisphaericaexon
TCONS_00046270-exon-scaffold_108-1575043694:3869..4152TCONS_00046270-exon-scaffold_108-1575043694:3869..4152Clytia hemisphaericaexon
TCONS_00046270-exon-scaffold_108-1510915933:4245..4583TCONS_00046270-exon-scaffold_108-1510915933:4245..4583Clytia hemisphaericaexon
TCONS_00046270-exon-scaffold_108-1510915933:3869..4152TCONS_00046270-exon-scaffold_108-1510915933:3869..4152Clytia hemisphaericaexon
TCONS_00046270-exon-scaffold_108-1491911889:4245..4583TCONS_00046270-exon-scaffold_108-1491911889:4245..4583Clytia hemisphaericaexon
TCONS_00046270-exon-scaffold_108-1491911889:3869..4152TCONS_00046270-exon-scaffold_108-1491911889:3869..4152Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:3869..4583 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
32.6498	36.2677	15.2334	13.6695	31.318	20.7298	38.4509	42.3922	25.4192	28.7129	20.2292	24.9977	13.2794	10.1803	12.7977	17.3371	21.1005	18.3965	5.01026	7.53068	11.434	12.9728	25.3501	21.975	24.7499	28.4936	6.11025	6.39562	17.0255	19.9628
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR022712Beta_Casp
IPR001279Metallo-B-lactamas
Blast
[Close]
BLAST of TCONS_00046270 vs. Swiss-Prot (Human)
Match: INT11 (Integrator complex subunit 11 OS=Homo sapiens GN=INTS11 PE=1 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 1.060e-95
Identity = 130/164 (79.27%), Postives = 152/164 (92.68%), Query Frame = 3 
Query:  129 QVLIPVFALGRAQELCILLETFWDRMNIKVPIYFSTGLTEKANHYYKLFISWTNQKIRNTFVQRNLFDFKHIKAFDRSYIENPGPMVVFATPGMLHAGLSLQIFKKWAPDENNMLIMPGYCVVGTVGHKVLTGQKKIELDKKTVIDVNISVEYLSFSAHADASG 620
            +VLIPVFALGRAQELCILLETFW+RMN+KVPIYFSTGLTEKANHYYKLFI WTNQKIR TFVQRN+F+FKHIKAFDR++ +NPGPMVVFATPGMLHAG SLQIF+KWA +E NM+IMPGYCV GTVGHK+L+GQ+K+E++ + V++V + VEY+SFSAHADA G
Sbjct:  234 KVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKG 397
The following BLAST results are available for this feature:
BLAST of TCONS_00046270 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
INT111.060e-9579.27Integrator complex subunit 11 OS=Homo sapiens GN=I... [more]
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