TCONS_00046301 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046301
Unique NameTCONS_00046301
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length812

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046301 ID=TCONS_00046301|Name=TCONS_00046301|organism=Clytia hemisphaerica|type=transcript|length=812bp
GTAATGAGAAGATAAAAAGAAtacttaaaatttgatatataaGTTTAAAT
ACAAACACAAATGGGTGATCCCGTCAGTTATGGTGCACATCAGTCCAATT
CAGAAGCTGGCCAATTGTTGGCAACCTACTGGCCACGTGTCATGGCTGAT
ATCCGGACCAAACCATTTTTGCAGAAAACTGGAAAGAAAGATGAACCAAT
TCAAGAACTTCCGCTTGCAAGAATCaagaaaataatgaaacaaGATGGTG
ATGTGAAGATGATAAGTGCTGAGGCTCCCATACTATTTGCCAAAGCTGCA
GAGATTTTTATCAGCGAATTATCTTTGCGTGCTTGGATTCATACAGAAGA
TAATAAGAGAAGAACTTTACAGAGAAATGATATAGCGATGGCAATAACAA
AATAtgatcaatttgattttttaattgataTTGTTCCAAGAGATGAACTG
AAACCTGCAAAGCGACAAGAAGAAGTTGTCCGTCAACCTCCGAACGTGAT
GGCACCAGAGCAAGTCCAATACTATTTCCATTTATCACAACTTCAATCAA
ATGCAGCAGCTGCAGCAGGGACTACCAACTCATCTGCAACTCCTGTTCAA
GCAACCGCCAACACGCCACAAATCACCCATTTACCACCAGGCGCACATGT
AATCCAACAGAACGGTCAATTCATTATTGCCACACCTCAACAATTAAGTG
GTCTACAATCAACCGGTGCAACTCCAGCACAAACTGCCAACGTAAGCTCA
TCACAATAGTATGGTAGAGTTCATTCCATTCATAGTTTTCTTTTGATGCG
CTTAAAatgtca
Run BLAST on NCBI

transcript from alignment at scaffold_108:385479..396900-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046301 ID=TCONS_00046301|Name=TCONS_00046301|organism=Clytia hemisphaerica|type=transcript|length=11422bp|location=Sequence derived from alignment at scaffold_108:385479..396900- (Clytia hemisphaerica)
GTAATGAGAAGATAAAAAGAATACTTAAAATTTGATATATAAGGTGAGGC
CAAGTTAATTTATTTTTCGACTTGCTTTTTCCTTTTTCCGAAATTGAAAA
GAATAATGAAATTGAATTTGCCAAGTTATAATATGGGTAGATCTTTTTTG
TGGATGTTTTTAGCTAAATACGTTGATTTAAAATATCGTATCACAGTATG
GAAATAAATGACACGAAAGTCACTCATCGATAAAGCAATTTGTATTTATA
TTTATGATACCGACCCATATTTTTCTAAAGGTCTCCCCGTAAAAGCAATA
AATTAAATTTGTCTCGTCTCTAACTGATCGACTAATGAAAATATACCAGT
ACCACATGGGTTTAATCAAGAAAAACAAGTTAAACTTAAAAATGAAGATA
AGGGCTGCACACAGCAGTACGTACGTCGTTAACTTTGAGTATCCTGCCTC
CTCTCATATCAGGTAAATTCTGGTAAATAAATGTATGTCTAAATTTCCAG
TAATTTTTCGGAAGCAGACTGTATTTATTTTGATAAGGCCCGGAGAACTC
AAGTTAGCTTTTTAGTCCAGAAGCAGCCAACGAGCCCATTTCCCCGAAAT
ATTTGTTTCCCTTTTCCAGGAGAGAGCTTTTTTTTGAAAAATGGGGGAAC
AGACCCGATTTTCTAGGAGAGACCTTTTCCTTAAAATTATCTGTTTCCCC
GCTCCAGCTGGTGACGTCATCAGAGAGAAACAGATCAACATTTCTAGGAG
TGCATTGGAAACAGATTGAATTTTCTGGGGGGAAACAGATATCAATCACA
AAAAGCAAGGGAAACAGATGAAAATTTCCAGGAGAGCGAGGACAGATATC
CTATTTGGGAGAACAGATCAACATTTTAATTCTGAAAATTGTGGAATCAA
ATTTTCTAGGAAAGATACTTTGAGATTAAAAATTTAGGTCTTGTTGTGGA
GAAAACAGATCTTTTAGCTAACTGATTAAATTTTACAGGAAGGCTATGTC
TGTGGGAAACAGATGTTTAAAAAAAGGTCCTCTTTGGATGCTTTCGTTAG
TCATTTTAGAAAAAAACTTTTTTATGGCATGGTGAACCGATTTTTTTTTG
CGGTGGCAAAAATGTGCCCTTCAAAAACTGAAAACCGCCTGCCGCCTGAA
GGAAAAACGCCATGTTGCAAGTGTTGGGGGGACTGGGCGGTTGTGGTTTT
ACTACTCAAGGTATGAAGCGAATAGAAACGGACTTCGATTTGAAAAGGTG
TGTGACCACGCAGCGAGTTATTGTGGAAAGCGATGTTGGAGCCAACCAGA
ACATCTATAGATTTTGACCAACCAGAATACTTTTCATCTCAAGCCACCAA
CCAGAAACCATCACTACCCAGTTCCTAGAAGTTCCTCAAAACAAAGGTAA
ATGAAAGTATAATTTTTTAAATGTGCAACCATAAAAAGCAAATCTTATCC
TTCAGCTATATCCTAAGGTTTGGTCCTTTTTTACGAAATTTTATGAAAAA
CTTGATCACCACTGTGATCACTGTGGAGTCAGAGAGGCATTAGGCTATTC
CATTTTTAATCCATAATCATAAAGGAGTATTCACAAACTTTTCCAGGCGG
TCTTACTTAATCCCAGATTTTCCAATGGGTTTTAATTGTTTTTGAATATT
TCCAAGGGCAGGGGGTTATTGAATTTTTTCCAGGGTATCAGAGGAGCTTA
AAGAAAGTTTTCCAGGACCTATATTTGAGGAATTCGATGAAAAACCCATA
AATTACTTTCCAGGGGGCTCGTGCAGCCAGGGATTATACTCTAGTTGTTA
CAAGATATACTCTACAGGACAGGATTAAAAGATTGGTCAGAATCACTGAT
TGAAAACAGGTTTTTTTCCTCTCTGACCTCCCCAATAATGGGCCATTCCA
GTTTTTATTCGTTACCCCCCAATGGACGACATGGAATTTCCGTAGCAAAT
TGCTTTCAAGAAAGTCCGGAATTTCCGTAACAAATTTTCAAAATACCTAT
CAAAACAGTGGAATTCCGTTACTGTAACCTAAAAAAATCATGGAATTCCA
ATACTTTAATGCAACATTAAGTAAAATTCATGGAATTCCGATACTTTCTC
TTTAAAGTTTGCCTGGAATTCCGTGCCAAAATTTATTTCAAAAATTGATG
TCATCCATTAGGGGGTAATTTTTTTTTTCTGGAATGGCCCAATCTGTCCG
GCTCTAAAGAAGGGTGTTGGAATTAGACGAGGGATGTCGACATTAGACCA
ACTTACGGTATTTAAGAGAAGTTCTCTTCATTAGGAGATATCTTTATATA
CCTTAGTTAGGAGATTTTTTTACCATGCTGATTTTTGACCTTACAATGGG
CAGTTAGTGAAGCCCCCCCCTGCCAGCCCCCAGCGGACTCTCAATTCACG
CAATCACGCAATTTTTTTTTGAAATTCACGCATTCACGCAAATTTTCCTC
GAGTTTCATGCAATAACTCAATTTTTCAGAAAATCGGGGAAACATTGGAA
AATCGGGGACACTGCACACCATCAGTGGAAAAAAAACTAAAATTCACGTA
TTCACGCACAAAATGGCCCAGATTCACGCATTCACACAGTCAAAAAGTGG
ATTTTCACGTTCACGCAAGTTTTTTCAATTCACGCATTCACGCATTTTTT
TTTCAATTTTCTCGCATTCACGCATACCGCTGGGGGGGGGGCGTGTTAGT
CACACTAGGAAATTTTAAACTTTCAGAAAAAACAACATCAGTCATCTACA
CAGGATGTATTTGCAACAACAAGGATGAGAGTTACCTGAATCAAGTTCAA
GATCCCAAGACAATCAATTAAAACGAGACAGCGCTTCGATTTTAAGGCCT
TGTTTATACGCTAAAGTAAAAATAATAACCCACATGTAAATGGGTCATTG
TTGAGGTCCGGCAAAATTTCCAGGAAACAGCCTACCCAATGGTGCGCGGA
TCTAGGTGGGTTCCCTTAGATCTTTTTCTTGGGAAGTTGATCTTCAAATT
AGTTTTCAAGGTTGGCTTGACTCAAAGTTTTTCATCTATAGCTCAAATTT
TAGGCAATTTCTCAAAGTTTTTGAAAATGTTAATTTCATTAAAAAGTGCC
GGGTTATTTTTTCATGAATACCTTTAGAAGTTTTGCGCTTTTGCAGCATT
AATCTTTGGCAAGACGCTAGTGTGACTAGCTGATGGGCTATTCCAAAAAA
AAATTGTACAGGGGTATTGACAAACTTTTCTCACTAACCCCCCTGGAAAT
TTTTGATAACAATTATCCCCTGGAAATTAGGAGTCGACACCCCTGGAAAG
TGAAATTTTGTGAAAAAGGGCCTGGAAAGTGACTATTGATGTCAGTTTCA
GTTTAGGAGGGGAGAACCCCCTGGAAACCTTTAATGGGTCATTTCCCCCT
TGGAAAATCTGAAAATGAACAAAAACCCCTTGGAAAATCAAGGCTCAGAC
CCCCCTGGTCTGGTCTGGAAAAGCTCGTCAATACCCCTGTATGGTTTAAA
AATGGAATAGCCCAATCATCTTGCGGTATACTGCAATTGCGGTATAAATG
TCACTTTTACATTTTTCATAATATACTGCAATTGCAGATTATTCAAAAAA
CAGAATTCAAGATTCAAGGAGAAAACAGGCAATTTTTGTACATAATTGAC
AATATCTTTTTAATACGCACAGGCAAAATATTTTTTCTGTAGATCAGATT
CCTTAATAAAGACAAACTCTCTTCTTTTATGATTATTTACAATGTTTGTT
TATCTTTGTTGACCAGTGCTATTATAAGCCTTTGTAGGCTAACCACGAAT
GAAAACTACTGCAATTGCAGTATACTGCAAATTGAGGGATATCCCTGACT
GTCTATAGATCGTCTCAGTACGTCATTTTCTTCCTTCTGACAAAATTTAG
TTGAAATCTGCTTATATTTAGAAAAAGGTGTTGCGAAAATCATTATCTTT
CATTTTGATTTGGTTACTTCAGCAGTAATAAGGCTAATTTTGTGTTTTTT
TGACAATTGAAAGCAAATCTTCCGGTGTTCCGGAGCACAAAAAACAGCAC
TTTTTGGGTCCAGAGCGCTGAGAGGGTCCTACCTTAAGGAAATCAGTCAA
ATGTGCCAAATTCTCCTAGTTTAGGTATGGTTCTCTTAAGTAGGAGACTA
AAAATCTCCTAAATAAGGTAATCCTCTATTTGGGTTTTCTCTTATCTAGA
GTATAATCCTCACCTGTCCTAACTCAATTTCCAGGGGGTTATGCTGATCA
ATTACCCCTACGAACAACTAATATGGATCAAATGGTTGATAGTGTAAAAC
CCACCAAAGTGTTAATGTACTAATCTATAAAAACGTAAGATAATATAGAA
ACAACAGGAGTGTTGATAGTATACCCCAGACAGTCCCAGGTAAATGCCTG
GGATAGAAAAAACTATTTTTCCCTAGATATGTGACTTGTGCACCACCATG
CGCATCTGTAGAGGCACGCTGGGCGGTCATTCAAATTTACTGCACGATCA
CCATGTACACTGCCCAACCCTTTGAGTACGTTGCGCTGCCAGCACGGCAC
ATCACAGTGCCAGAACACTGTGGAATCGTTTGAGTACGTTGCGCTGCCAG
CATGGCACATCACAGTGCCAGAACATCGTGGAACCGTGTGAGTGCGTTGC
TTCGCCAGTACAGCACATCACAGGCATATTTCTCTAATGTTGCACGAACA
ACACACCAAGTTCGGGGGCGTCCAAGGCACTAAGTTTCTAAATAAATGTT
AAAATCCCTGGACATTTAACAAGAAATCGCTCGACTGTCTGGAATATCAG
CATGGTCATATACCCCTGTAAATTGATTACAAATGGAATAGCCCATTGTC
AACAATGTTATCTCCCCAACCACTCCCTGTATTTATCTTTTGCATAGTCA
GGCAGCTGAGGTCACATAAAAATGAACGGGGTGCAAACAATCTAATAAAA
CCATTTTTAAATTATACAGCCCAGATATCTATCAACTGGACCTATCCAAA
TAGTTGTTATGGAGAATGCAACAATCTATTGAATAACAAATAACTCCACA
TACATTATTTTCCCTTAGCAATCGCGTTCTCCTATTCTCTTATTTACATG
TCATCCTCGTTAACATTTTGGGTCCCAGATGACGTCATATAGGCCCAAGA
TGATAGAATCCAATAACCATTCAAAAGCTCTCAAAAATCAATATAGAAGA
AGACTTTTAAGAGGATATGTATAATTTCTCAATATAACTCAAGAAAATTG
ATTCTGAAAAAGGGGCAAAATTTCCACATTGTGACGTCATTAGAATTACA
AACCGTTATTAAAATTTCCAGGTGAAATTTGGAAATTTTATGGTTTTAGG
TGGGAGAAACAAGTTAAGGTGGGGATTAATTTCTTTAGGTGCGATTTTTA
GTGTTTTGGTAAAAGTTAATGTTAGTTTTTTCTTCTTTCCAATTTAATAA
TAATTTCTTCTAAATTTTATATTCTAAATAATTATTTTACTATCTATACT
AAACTTTTCTCCTTTTTATTACCGGGTGTCTCTGAAAAAACTTCCCCCTG
TTTGATTCAAAATTGCGAAAAAGTGAAAAAATATATTAGCTTGATTTTTT
CGAAATCGTTTAGAGGATGGTTTAACTTAAATTTTGGTATATCAAACTTT
AAAATTGCTTCATTAGACCAAAAGTTATGACAAAAAGAGTAAAAAATCTT
TTTTCAAAAAGAGCGAAAAAAGANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTTAGAGGAGGGTTTAACTTAAATTTTGGTATATCAAACTTT
AAAATTGCTTCATTAGACCAAAAGTTATGACAAAAAGAGTAAAAAATCTT
TTTTCAAAAAGAGCAAAAAAAGACGAAAAAACAGGGTATAGTTACAGCTA
ATATATTTTTTCACTTTTTCGCAATATTGGATCAAACTAGGGGGAAGTAT
TTTCAGAGACACCCGGTATTATACTGTAAGAATTTTTGTTTCGTTCCTCA
AAATAGTATAATTTTTCGTGGGGATAGCATTTTTAGCTGGGATCTGGGAG
TTTGGATTGAGGTTAGGAATTTTAGGGTTAGGTGGGACCTAAATTTTTAG
GTGGGACCTGGAATCCCCTTGCACACTATGTAGTATCTTTTGTACTATGC
TGGTCAGTGCTTGTTAAAACTATGTAGAATGTTTGGGTAATGTTTGGATT
GTAATCGGTAAATATCCAGCAAAATATCAAAATTAATAAAGTTTATCAAA
AATTCAGCAAGACTAATTTAACATGTTTTTGTTTTCCATCTCAGTTTAAA
TACAAACACAAATGGGTGATCCCGTCAGTTATGGTGCACATCAGGTATTA
ACTTCAGAGTTTTTCATATATCATAGTTGAGTGAATGAAAGTATTTCTAA
TATATTTAGTTTTATCTTAAATGATCGCCAATCAGTTGCAAAAGTTTATA
TTTTTATGGAGAGCAAGTACTCCAATGTTAGCAAAAGAAATTCTCTCTGT
TCTTACTTTTGATCATCTTTTGTAACCAATGTTGATTATCTGATCTGATC
AATTATTTATTTATTATATTTTAGTCCAATTCAGAAGCTGGCCAATTGTT
GGCAACCTACTGGCCACGTGTCATGGCTGATATCCGGACCAAACCATTTT
TGCAGAAAACTGTAAGTTGTATGATTTTATTATTCTATAGTCAAATTCAC
TTAAGCAAACTCACCTTTAAAATCATGTCAATATGTCAATTTTTAAGTAT
TGTATGTTATATAATATGTCCCAGGGGGCACTCGTTCTGAAAACAACCAT
ATATTCGGCCCAAAAATTGACTTTTAAAATCAGACGCTTACAGTGCAGGA
ATAAGCTACGAAAATTGAAACCCTTACAGTGTGGAAACTGACAAAAAATA
CACCCTTACAGTGCATCATTCTTTTCATCAGACCTTTTCAATGGAACACC
TCCCTTTCAAAAAGGTAATAAGACATATAGGTATCATTCAGTGTGTTACT
TCTTCTTTCGGAATTTATTTTTTGGACCTACCTGGAGGTGCTCTGGAGGT
GCTATAAATTAACCCATGTTCTTAGTTAGTTTGTGCGTTCTTTTATTACA
GTACCAGATTTTCTCAATATCGATTTTTTGCACAAAAATGTGCATTAATT
CAAATGAGAGACCAGATCCAAAAATGTCCCATAAAAAACTGTTTTTTGGG
ATTATTTTGAGAATTAATCAAAAGTTTTTCCCTCGATGGGTATTAATACT
ACCAACAACTGTCTGTAGAACCAGAAATTGCTGTTTTTTGCATTTCCATA
AATTTTGCATATTCAAGAATTCACGTAATTATTGTTATTAAACACAATTT
TTTTGTTAATGGGTTAATGATATTTTCAGGGAAAGAAAGATGAACCAATT
CAAGAACTTCCGCTTGCAAGAATCAAGAAAATAATGAAACAAGATGGTGA
TGTGAAGATGATAAGTGCTGAGGTATTTGCCAATGTTCTTTTTAATCAGT
TCTTTTAAAGGTTGCAATTCAAATCATGGTTTTCATTTTATCAAAAATTG
ACTGTTTTGCTGCCAACCATATTTTTGTTAACGAAAAAAAACAGCTAAAT
CTTTAAAACAGATACCTAGTACTTTGTGTTTTATTTGTTCAAGATATGGC
TTTGACTCGATTAGCAAAATCACTGATGTCTTGCTTTCTTTTTAATAGTG
ATAACAGTTTTCTCTAAAGTTTGCTAGAGTTGTAGTTGTAGTTGCTGTTC
TCCAAATTTTACAAATACCTGCATCCCCTAATGAAAACAAGTATTTTACC
ACTTTTAGGCTCCCATACTATTTGCCAAAGCTGCAGAGATTTTTATCAGC
GAATTATCTTTGCGTGCTTGGATTCATACAGAAGATAATAAGAGAAGAAC
TTTACAGGTATAATATCTATCCTAATCTTATTGGATTTTCGTTTCTTTTT
TTGAATCAATGAGAAACGTGTGCATTAAAATTTTGAAGTGTCTAGAATTT
AGATAACTTACTGTAGGAATCACTTAACATCTGGAAAAACTGGGTGCTCA
TATCAGTACATCATAAACTCAAAACAGATTTATGTTGTAAACTTCTGCCT
AGCAACCTTTCTTTGCATTTAACGTTTTTCTTTCCTCTTTTTAGAGAAAT
GATATAGCGATGGCAATAACAAAATATGATCAATTTGATTTTTTAATTGA
TATTGTTCCAAGAGATGAACTGAAACCTGCAAAGCGACAAGTAAGCGTNT
TTGTAACCAATGTTGATTATCTGATCTGATCAATTATTTATTTATTATAT
TTTAGTCCAATTCAGAAGCTGGCCAATTGTTGGCAACCTACTGGCCAAGT
GTCATGGCTGATATCCGGACCAAACCATTTTTGCAGAAAGCTGTAAGTTG
TATGATTTTATTATTCTATAGTCAAATTCACTTAAGCAAACTCTCCTTTA
AAATCATATCAATATGTCAATTTTTAAGTATTGTATGTTATATAATATGT
CCCAGGGGGCACTCGTTCTGAAAACAACCATACATTTGGCCCAAAAATTG
ACTTTTAAAATCAGACACTTACAGTGCAGGAATAAGCTACGAAAATTGAC
ACCCTTACAGTGTGGAAACTGACAAAAAATACACCCTTACAGTGCATCAT
TCTTTTCATCAGACCTTTTCAATGGAACATCTCCCTTTCAAAAAGGTAAT
AAGACATATAGGTATCATTCAGTGTGTTACTTCTTCTTTCGGAATTTATT
TTTTGGACCTACCTGGAGGTGCTCTGGAGGTGCTATAAATTAACCCATGT
TCTTAGTTAGTTTGTGCGTTCTTTTATTACAGTACCAGATTTTCTCAATA
TCGATTTTTTGCACAAAAATGTGCATTAATTCAAATGAGAGACCAGATCC
AAAAATGTCCCATAAAAAACTGTTTTTTGGGATTATTTTGAGAATTAATC
AAAAGTTTTTCCCTCGATGGGTATTAATACTACCAACAACTGTCTGTAGA
ACCAGAAATTGCTGTTTTTTGCATTTCCATAAATTTTGCATATTCAAGAA
TTCACGTAATTATTGTTATTAAACACAATTTTTTTGTTAATGGGTTAATG
ATATTTTCAGGGAAAGAAAGATGAACCAATTCAAGAACTTCCGCTTGCAA
GAATCAAGAAAATAATGAAACAAGATGGTGATGTGAAGATGATAAGTGCT
GAGGTATTTGCCAATGTTCTTTTTAATCAGTTCTTTTAAAGGTTGCAATT
CAAATCATGGTTTTCATTTTATCAAAAATTGACTGTTTTGCTGCCAACCA
TATTTTTGTTAACGAAAAAAAACAGCTAAATCTTTAAAACAGATACCTAG
TACTTTGTGTTTTATTTGTTCAAGATTTGGCTTTGACTCGATTAGCAAAA
TCACTGATGTCTTGCTTTCTTTTTAATAGTGATAACAGTTTTCTCTAAAG
TCAGTCTTTCCGGGTCCGATTGAGAAAAAAATTTTTTTGGTAGAGTTGTA
GTTGTAGTTGCTGTTCTCCAAATTTTACAAATACCTGCATCCCCTAATGA
AAACAAGTATTTTTCCACTTTTAGGCTCCCATACTATTTGCCAAGGCCGC
AGAGATTTTTATCAGCGAATTATCTTTGCGTGCTTGGATTCATACAGAAG
ATAATAAGAGAAGAACTTTACAGGTATAATATCTATCCTAATCTTATTGG
ATTTTCGTTTCTTTTTTGAATCAATGAGAAACGTGTGCATTAAAATTTTG
AAGTGTCTAGAATTTAGATAACTTAATGTAGGAATCACTTAACATCTGGA
AAAACTGGGTGCTCATATCAGTACATCATAAACTCAAAACAGATTTATGT
TGTAAACTTCTGCCTAGCAACCTTTCTTTGCATTTAACGTTTTTCTTTCC
TCTTTTTAGAGAAATGATATAGCGATGGCAATAACAAAATATGATCAATT
TGATTTTTTAATTGATATTGTTCCAAGAGATGAACTGAAACCTGCAAAGC
GACAAGTAAGCGTNTACCTAGTACTTTGTGTTTTATTTGTTCAAGATATG
GCTTTGACTCGATTAGCAAAATCACTGATGTCTTGCTTTCTTTTTAATAG
TGATAACAGTTTTCTCTAAAGTTTGCTAGAGTTGTAGTTGTAGTTGCTGT
TCTCCAAATTTTACAAATACCTGCATCCCCTAATGAAAACAAGTATTTTA
CCACTTTTAGGCTCCCATACTATTTGCCAAAGCTGCAGAGATTTTTATCA
GCGAATTATCTTTGCGTGCTTGGATTCATACAGAAGATAATAAGAGAAGA
ACTTTACAGGTATAATATCTATCCTAATCTTATTGGATTTTCGTTTCTTT
TTTGAATCAATGAGAAACGTGTGCATTAAAATTTTGAAGTGTCTAGAATT
TAGATAACTTAATGTAGGAATCACTTAACATCTGGAAAAACTGGGTGCTC
ATATCAGTACATCATAAACTCAAAACAGATTTATGTTGTAAACTTCTGCC
TAGCAACCTTTCTTTGCATTTAACGTTTTTCTTTCCTCTTTTTAGAGAAA
TGATATAGCGATGGCAATAACAAAATATGATCAATTTGATTTTTTAATTG
ATATTGTTCCAAGAGATGAACTGAAACCTGCAAAGCGACAAGTAAGCGTC
AAAACCTCCGTCCAGTTTCATTTGGATAATTGTTACCGACTATCAAGTGA
AAACCTTTCCTTTTCAATATCAGAAAAAATGAAAATAAATTGCTTATAAA
AAACAGTACCAGATGATATAATAGTGGTTCTTTGGCTTTTCTTCAGTCTG
ATGTTTCATATCAGACATATTTTTATTTTATATCAGGCCGGGTACTTGTG
TTTTATTGTGTTCTTATTTTGTGTCGTGTAAACAAATAAATTGATTTTCT
TTCCTTTCTCTATCTAAAATTGCCCTATTTTGAGTCCAATCATGCATGGC
GTTCTAAATCTAGATTGAGAACGGCATGAGTCCAATCAATAAAAAGAACT
TATGATCTCAAATTGAAGAATCTTGCAACTAAAAACAAGATTACTTTTTA
TTAAAAACAAAACTTTTATCATTAACAGGAAGAAGTTGTCCGTCAACCTC
CGAACGTGATGGCACCAGAGCAAGTCCAATACTATTTCCATTTATCACAA
CTTCAATCAAATGCAGCAGCTGCAGCAGGGACTACCAACTCATCTGCAAC
TCCTGTTCAAGCAACCGCCAACACGCCACAAATCACCCATTTACCACCAG
GCGCACATGTAATCCAACAGAACGGTCAATTCATTATTGCCACACCTCAA
CAATTAAGTGGTCTACAATCAACCGGTGCAACTCCAGCACAAACTGCCAA
CGTAAGCTCATCACAATAGTATGGTAGAGTTCATTCCATTCATAGTTTTC
TTTTGATGCGCTTAAAATGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029558XLOC_029558Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046301-exon-scaffold_108-1575043694:396858..396900TCONS_00046301-exon-scaffold_108-1575043694:396858..396900Clytia hemisphaericaexon
TCONS_00046301-exon-scaffold_108-1575043694:390557..390606TCONS_00046301-exon-scaffold_108-1575043694:390557..390606Clytia hemisphaericaexon
TCONS_00046301-exon-scaffold_108-1575043694:390240..390326TCONS_00046301-exon-scaffold_108-1575043694:390240..390326Clytia hemisphaericaexon
TCONS_00046301-exon-scaffold_108-1575043694:389429..389521TCONS_00046301-exon-scaffold_108-1575043694:389429..389521Clytia hemisphaericaexon
TCONS_00046301-exon-scaffold_108-1575043694:388994..389092TCONS_00046301-exon-scaffold_108-1575043694:388994..389092Clytia hemisphaericaexon
TCONS_00046301-exon-scaffold_108-1575043694:388661..388756TCONS_00046301-exon-scaffold_108-1575043694:388661..388756Clytia hemisphaericaexon
TCONS_00046301-exon-scaffold_108-1575043694:385479..385822TCONS_00046301-exon-scaffold_108-1575043694:385479..385822Clytia hemisphaericaexon
TCONS_00046301-exon-scaffold_108-1510915933:396858..396900TCONS_00046301-exon-scaffold_108-1510915933:396858..396900Clytia hemisphaericaexon
TCONS_00046301-exon-scaffold_108-1510915933:390557..390606TCONS_00046301-exon-scaffold_108-1510915933:390557..390606Clytia hemisphaericaexon
TCONS_00046301-exon-scaffold_108-1510915933:390240..390326TCONS_00046301-exon-scaffold_108-1510915933:390240..390326Clytia hemisphaericaexon
TCONS_00046301-exon-scaffold_108-1510915933:389429..389521TCONS_00046301-exon-scaffold_108-1510915933:389429..389521Clytia hemisphaericaexon
TCONS_00046301-exon-scaffold_108-1510915933:388994..389092TCONS_00046301-exon-scaffold_108-1510915933:388994..389092Clytia hemisphaericaexon
TCONS_00046301-exon-scaffold_108-1510915933:388661..388756TCONS_00046301-exon-scaffold_108-1510915933:388661..388756Clytia hemisphaericaexon
TCONS_00046301-exon-scaffold_108-1510915933:385479..385822TCONS_00046301-exon-scaffold_108-1510915933:385479..385822Clytia hemisphaericaexon
TCONS_00046301-exon-scaffold_108-1491911889:396858..396900TCONS_00046301-exon-scaffold_108-1491911889:396858..396900Clytia hemisphaericaexon
TCONS_00046301-exon-scaffold_108-1491911889:390557..390606TCONS_00046301-exon-scaffold_108-1491911889:390557..390606Clytia hemisphaericaexon
TCONS_00046301-exon-scaffold_108-1491911889:390240..390326TCONS_00046301-exon-scaffold_108-1491911889:390240..390326Clytia hemisphaericaexon
TCONS_00046301-exon-scaffold_108-1491911889:389429..389521TCONS_00046301-exon-scaffold_108-1491911889:389429..389521Clytia hemisphaericaexon
TCONS_00046301-exon-scaffold_108-1491911889:388994..389092TCONS_00046301-exon-scaffold_108-1491911889:388994..389092Clytia hemisphaericaexon
TCONS_00046301-exon-scaffold_108-1491911889:388661..388756TCONS_00046301-exon-scaffold_108-1491911889:388661..388756Clytia hemisphaericaexon
TCONS_00046301-exon-scaffold_108-1491911889:385479..385822TCONS_00046301-exon-scaffold_108-1491911889:385479..385822Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:385479..396900 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.68915	1.26187	1.1872	0.983061	1.09698	1.61552e-09	0	0	0	0	0	0	0.0781194	0	0	0.85127	0.711345	0	0	0.693791	0	0	0.846495	0.614149	0	0	0.389397	0	0.27126	0.246134
Blast
[Close]
BLAST of TCONS_00046301 vs. Swiss-Prot (Human)
Match: NFYC (Nuclear transcription factor Y subunit gamma OS=Homo sapiens GN=NFYC PE=1 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 1.727e-64
Identity = 109/149 (73.15%), Postives = 122/149 (81.88%), Query Frame = 1 
Query:   94 SNSEAGQLLATYWPRVMADIRTKPFLQKTGKKDEPIQELPLARIKKIMKQDGDVKMISAEAPILFAKAAEIFISELSLRAWIHTEDNKRRTLQRNDIAMAITKYDQFDFLIDIVPRDELKPAKRQEEVVRQPPNVMAPEQVQYYFHLSQ 540
            S+S+A Q L ++WPRVM +IR          KD  +QELPLARIKKIMK D DVKMISAEAP+LFAKAA+IFI+EL+LRAWIHTEDNKRRTLQRNDIAMAITK+DQFDFLIDIVPRDELKP KRQEE VRQ  +V   E VQYYF L+Q
Sbjct:   11 SSSDAQQSLQSFWPRVMEEIRNLTV------KDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEE-VRQ--SVTPAEPVQYYFTLAQ 150
The following BLAST results are available for this feature:
BLAST of TCONS_00046301 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NFYC1.727e-6473.15Nuclear transcription factor Y subunit gamma OS=Ho... [more]
back to top