|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046315 ID=TCONS_00046315|Name=TCONS_00046315|organism=Clytia hemisphaerica|type=transcript|length=2624bpRun BLAST on NCBI transcript from alignment at scaffold_108:594066..597484- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046315 ID=TCONS_00046315|Name=TCONS_00046315|organism=Clytia hemisphaerica|type=transcript|length=3419bp|location=Sequence derived from alignment at scaffold_108:594066..597484- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00046315 vs. Swiss-Prot (Human)
Match: ZSC22 (Zinc finger and SCAN domain-containing protein 22 OS=Homo sapiens GN=ZSCAN22 PE=1 SV=2) HSP 1 Score: 159.844 bits (403), Expect = 1.996e-41 Identity = 81/203 (39.90%), Postives = 109/203 (53.69%), Query Frame = 2
Query: 746 DIEKTEPNKSSLQKVVYKCSFCAIDFESKEKYLEHEKSHADR---KCIICGKEFQRLGHLKVHMHSHNNIRPFECKECGKAFHEKCSLNKHQQVHSNERNHECSTCGMKFKRAQHLRRHNEVHKQNKQFTCLLCNKQFLQKSALEAHINVHTGNKPFKCKVCSHSFADRATLRRHTLTHAKEKPYQCLLCSKEFCRQNSLKLH 1345
D TEP + K KC C F+S H+K+H+ + C CGK F R HL H H +P ECKECGKAF L +HQ++H+ E+ ++C CG F R+ HL +H VH + + C C K F Q + L H +HTG KP+KC C +F+D + L RH H+ EKPYQC +C K F + +SL H
Sbjct: 252 DAYGTEPPYTYSGKRSSKCRECRKMFQSASALEAHQKTHSRKTPYACSECGKAFSRSTHLAQHQVVHTGAKPHECKECGKAFSRVTHLTQHQRIHTGEKPYKCGECGKTFSRSTHLTQHQRVHTGERPYECDACGKAFSQSTHLTQHQRIHTGEKPYKCDACGRAFSDCSALIRHLRIHSGEKPYQCKVCPKAFAQSSSLIEH 454 HSP 2 Score: 157.532 bits (397), Expect = 1.506e-40 Identity = 75/197 (38.07%), Postives = 106/197 (53.81%), Query Frame = 2
Query: 767 NKSSLQKVVYKCSFCAIDFESKEKYLEHEKSHADRK---CIICGKEFQRLGHLKVHMHSHNNIRPFECKECGKAFHEKCSLNKHQQVHSNERNHECSTCGMKFKRAQHLRRHNEVHKQNKQFTCLLCNKQFLQKSALEAHINVHTGNKPFKCKVCSHSFADRATLRRHTLTHAKEKPYQCLLCSKEFCRQNSLKLHM 1348
K+ +K Y CS C F +H+ H K C CGK F R+ HL H H +P++C ECGK F L +HQ+VH+ ER +EC CG F ++ HL +H +H K + C C + F SAL H+ +H+G KP++CKVC +FA ++L H H EKPY+C C K F R ++L +H+
Sbjct: 287 QKTHSRKTPYACSECGKAFSRSTHLAQHQVVHTGAKPHECKECGKAFSRVTHLTQHQRIHTGEKPYKCGECGKTFSRSTHLTQHQRVHTGERPYECDACGKAFSQSTHLTQHQRIHTGEKPYKCDACGRAFSDCSALIRHLRIHSGEKPYQCKVCPKAFAQSSSLIEHQRIHTGEKPYKCSDCGKAFSRSSALMVHL 483 HSP 3 Score: 119.398 bits (298), Expect = 3.132e-28 Identity = 59/163 (36.20%), Postives = 82/163 (50.31%), Query Frame = 2
Query: 794 YKCSFCAIDFESKEKYLEHEKSHADRK---CIICGKEFQRLGHLKVHMHSHNNIRPFECKECGKAFHEKCSLNKHQQVHSNERNHECSTCGMKFKRAQHLRRHNEVHKQNKQFTCLLCNKQFLQKSALEAHINVHTGNKPFKCKVCSHSFADRATLRRHTLTH 1273
++C C F +H++ H K C CGK F R HL H H RP+EC CGKAF + L +HQ++H+ E+ ++C CG F L RH +H K + C +C K F Q S+L H +HTG KP+KC C +F+ + L H H
Sbjct: 324 HECKECGKAFSRVTHLTQHQRIHTGEKPYKCGECGKTFSRSTHLTQHQRVHTGERPYECDACGKAFSQSTHLTQHQRIHTGEKPYKCDACGRAFSDCSALIRHLRIHSGEKPYQCKVCPKAFAQSSSLIEHQRIHTGEKPYKCSDCGKAFSRSSALMVHLRIH 486 HSP 4 Score: 103.219 bits (256), Expect = 7.240e-23 Identity = 45/113 (39.82%), Postives = 67/113 (59.29%), Query Frame = 1
Query: 1696 QQVHSNVRNHECSTCGMKFKRAQHLRRHNEVHKQNKQFTCLLCNKQFLQKSALEAHINVHTGNKPFKCKVCSHSFADRATLRRHTLTHAKEKPYQCLLCSKEFCRQNSLKLHM 2034
Q+VH+ R +EC CG F ++ HL +H +H K + C C + F SAL H+ +H+G KP++CKVC +FA ++L H H EKPY+C C K F R ++L +H+
Sbjct: 371 QRVHTGERPYECDACGKAFSQSTHLTQHQRIHTGEKPYKCDACGRAFSDCSALIRHLRIHSGEKPYQCKVCPKAFAQSSSLIEHQRIHTGEKPYKCSDCGKAFSRSSALMVHL 483 HSP 5 Score: 101.293 bits (251), Expect = 2.863e-22 Identity = 45/112 (40.18%), Postives = 65/112 (58.04%), Query Frame = 1
Query: 1696 QQVHSNVRNHECSTCGMKFKRAQHLRRHNEVHKQNKQFTCLLCNKQFLQKSALEAHINVHTGNKPFKCKVCSHSFADRATLRRHTLTHAKEKPYQCLLCSKEFCRQNSLKLH 2031
Q++H+ + ++C CG F R+ HL +H VH + + C C K F Q + L H +HTG KP+KC C +F+D + L RH H+ EKPYQC +C K F + +SL H
Sbjct: 343 QRIHTGEKPYKCGECGKTFSRSTHLTQHQRVHTGERPYECDACGKAFSQSTHLTQHQRIHTGEKPYKCDACGRAFSDCSALIRHLRIHSGEKPYQCKVCPKAFAQSSSLIEH 454 HSP 6 Score: 89.3521 bits (220), Expect = 1.993e-18 Identity = 41/113 (36.28%), Postives = 59/113 (52.21%), Query Frame = 1
Query: 1696 QQVHSNVRNHECSTCGMKFKRAQHLRRHNEVHKQNKQFTCLLCNKQFLQKSALEAHINVHTGNKPFKCKVCSHSFADRATLRRHTLTHAKEKPYQCLLCSKEFCRQNSLKLHM 2034
Q VH+ + HEC CG F R HL +H +H K + C C K F + + L H VHTG +P++C C +F+ L +H H EKPY+C C + F ++L H+
Sbjct: 315 QVVHTGAKPHECKECGKAFSRVTHLTQHQRIHTGEKPYKCGECGKTFSRSTHLTQHQRVHTGERPYECDACGKAFSQSTHLTQHQRIHTGEKPYKCDACGRAFSDCSALIRHL 427 HSP 7 Score: 82.4185 bits (202), Expect = 3.206e-16 Identity = 42/112 (37.50%), Postives = 56/112 (50.00%), Query Frame = 1
Query: 1696 QQVHSNVRNHECSTCGMKFKRAQHLRRHNEVHKQNKQFTCLLCNKQFLQKSALEAHINVHTGNKPFKCKVCSHSFADRATLRRHTLTHAKEKPYQCLLCSKEFCRQNSLKLH 2031
Q+ HS + CS CG F R+ HL +H VH K C C K F + + L H +HTG KP+KC C +F+ L +H H E+PY+C C K F + L H
Sbjct: 287 QKTHSRKTPYACSECGKAFSRSTHLAQHQVVHTGAKPHECKECGKAFSRVTHLTQHQRIHTGEKPYKCGECGKTFSRSTHLTQHQRVHTGERPYECDACGKAFSQSTHLTQH 398 The following BLAST results are available for this feature:
BLAST of TCONS_00046315 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.