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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046343 ID=TCONS_00046343|Name=TCONS_00046343|organism=Clytia hemisphaerica|type=transcript|length=376bp
ATTCCACAGCAGCAGCTAGATAAAATTCAGAAGGGCGAATACATTACTAG
AAGTCATGTCACcagatttttaaattcttcacTGCGTGATGTCAACATCA
GCACACATAGTTTTCACATCGAGGGAGCCTCAGCTGCATCATCAGCTGGT
ATTCCTGACTCGGTTATACAATTGATGGGACGATGGAGAAGCAACTGTTT
TGTGTCGTACATACATCTCAACAACACCACTTGAAGAACCTGGTCGAGAG
AAATGGGACAAGTACATTAGGAGTGTTTGGAATGATAAAAATTAAGACTT
TCAAGAATGGTAATTGCTTGACGAAGTGAACAATAAAAATGGATACCTGG
ACACTAATTGGTCAAATGAATTTGGT Run BLAST on NCBI transcript from alignment at scaffold_109:28569..32442+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046343 ID=TCONS_00046343|Name=TCONS_00046343|organism=Clytia hemisphaerica|type=transcript|length=3874bp|location=Sequence derived from alignment at scaffold_109:28569..32442+ (Clytia hemisphaerica)
ATTCCACAGCAGCAGCTAGATAAAATTCAGAAGGGTGAGTTTGTTAACTT
TAATTTGCTTCTTCCCCAGCCAGCTTCTGCCTCTAATTCAACTCAGTCAT
TTACCCTTTCTGTTTCGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAA
CACTTAGCCCCCTTACTGATTAGATACCAGGAAAggatttgcagattttt
cacgaCGTATCCCTTTCAATGTGTGGCTGATTATGACGTCCAATTTAGAA
GGAAGGAAGTTGGCTGTAAACCCAACCGAAACCTTCTAGGACAGAATCGA
CCTggatattttttcttcaactttgAGGCCTCAGGTTGGTAGCTCTTCCT
CCAGCCAAGCTGGTTCGTTTCCTGATGTGACTTGCTacaaaagtaagaaa
aaaggTCATTATGCAACTAGGTGTCCTAACCCTTCGTCCTCACAGGACCA
AACTACTAGTACTTTCACGCAGTCTCGACCACCTAGACCTCCCATTTCTG
GTGCTAATCTAATGCACAAAATTCCTTTCAAGGAAGTGCCCATGATGCAG
CGACTGAGGCATGCCCCTATTTTAACTCTAGCTTCTGCAGGAGAGGCGCC
ACGTGTCATTATGCCCATAAATGCTCCTACTGTGGAAGGCCAGGTCACCC
AGCACACAGTTGCAAAGCATCCAGGCCCTCTGGATAGTGTACCAGCAGGA
TTGTTTCCCTTACCTCCTTCTGCTATTTGCAGGATTAATTTACGAttgtt
tcttgtttttcttgagGGTCATCCTGACCCCTACATTGTTGATTCTCTTA
AGTCTGGTTTTCGTGTTGGttttattacaaaaatgacACCAGGAAGGAAA
AGACCACTTTCATCGTCCAATGATGTTTCTGAGAACATTTCTACAGCCAT
TCTCAAAGCGATGAACAGAGGACACACAAAAGGTCCCTTTGCTATACctc
cttttaaaaatttccaagaGGGTCATCAGTCAATGATGGTATCTCTAGGG
AAgctttttctgtaaaatattCTAAGTTTGATGATGCGGTCGATTTAGCT
GCTACACCTACAGGTTGTTTCATGGGGAAAAGGGATATTAGACACGCTTT
CCGGCTCTGCCCAATTCATCCGGAAGACTGGCCTTTAATGGTTTACTGGT
GGAAAGGCAAGTATTATGTAGACATTGTATGCCTTTTGGTTTGCGCTCTT
TCCCATACATTTTCAACACATTTGCTGACTCCTTGGTGTGTATTTGCAAA
GTTAAAGGAGGAATTAAAGACATGTTACACTACCTGGATGATTATTTCTT
CACTGGTTCATCTGTAGATATTTGTACACAAGCAATGAACCAATTTGACA
GGATTTGTAACAGTTTGAACATTCCCCTATCAGAGGACAAAAAAGAAGGC
CCTTGTCAGAcaataacatttttaggcatAGAAATAGATACTCCGAACAG
GTGTTGTCGATTACCagacaaaaagttaaaagattTGTTAGGTAAGTTAC
AAGGCTGGAATAACGCTTCTCAGACTTCAAAGCGAGAGATGCTCTCGTTG
ATTGGTTCTTTGTCTTTTGCAGGTCATTAAGCCAGGTCGCACTTTTATGA
GGCGGTTGATTGACCTCTCCACATCGGTGACAGAGCTTAGTGGCATAGTG
GAAATTTCCGAACCTGCTCTTGAAGACATCAAGTGGTGGAGTGATTTTGC
TCCGAGATGGAACGGGACCGCTTTTTTCCAGGATCCTGTAGTGACATCAG
AAGACTTAGATTTCTTCACAGATGCGTCTGGTTTCGGGATAGGTGCTGTC
TTGGGTCTTAAATGATTTTCTGTTGCCTTATCAGCTTCAGCACAAAAACT
CCTATTCATATCTTAGAGTTTGTTGCAGTTGCCATGACTGTAATTACTTG
GGCGGATAACCTGGTTAATAAGCAGGTCACTATTTCTACCGATAATTTAG
ACATTGTTCTCGTTTGGCGTTCAGGTTCCTGTAGAGAcaaacttttgatg
aaactaGTTCGAcacctttttcttttcattgcaAGGATGaacatcaattt
tcttttgGTACACCTGCCAGGCAAAGATAATGTTTTTCCTGACTTACTTT
CTCACCTGCAGGTTGGCCGGTTCTTGAGTCTAGCCGAGTCCGCCAGTCCA
GAACCTTNCTTACTTTCTCGCCTGCAGGTTGGCCGGTTCTTGAGTCTAGC
CGAGTCCGCCAGTCCAGAACCTTCCAGGATCCCGGAGGAAGCATGGGAGA
TCTTAGACTTACTCGAGACCGTTTACTAGCTGAAGGTATCTCTCGAAACT
CTTTGCGCACATATCAATCAGANGTGCACATATCAATCAGGCTTCAAtcg
ttttcaaagattttgcttcatGTATTGCTTTGTGTGGTTGCCGCCACAAG
AATTACATTTAGAACTATTTGTCACTTCTCTTGCGAGACAAGGCCTACAG
TACAATACAATAAAGGTATATCTCTATGGAATTCAGTTTTGCGCACTACA
ACAAGGCGTCGAAGTTTTGAATAATCGTCGAAGAATTGCTTCCATGCGAA
GACTCTACTATGTCTGTAGAGGGATAAGGCGCACTCAAGTGGCTAGAAGA
AGGACTAGAAATCCTATCACACCTGCACACCATCGACAAATGTTATCTTT
TATCTCTAGCAGTCAACTTTCTGCCTACGACCAAGCACTTTGGAAATGTC
TAGTGCTTACAGATTCTTTTGGTCTTCTTCGAGTTTCAGAGTATACCTCA
GCTAGTTCAAGGTCATTTGATCCATTAACAAACCTTTGTGTGTCAGATGA
TTCCTTACAAGGGCCTAGTGTACTTATCAGAATAAAAGCAAGCAAGACAC
ACCTTTTTCGTGTGGGAACCAGCATCACTCTGTGGGAAGGTTGTGCACCC
CTCTGTCCTTTTAATGCCATatcttctttttactttttccgGATTACACG
TCCACCTGGACCGTTCCTCGTTTTGGAATCAGGCGAATACATTACTAGAA
GTCATGTCACcagatttttaaattcttcacTGCGTGATGTCAACATCAGC
ACACATAGTTTTCACATCGAGGGAGCCTCAGCTGCATCATCAGCTGGTAT
TCCTGACTCGGTTATACAATTGATGGGACGATGGAGAAGCAACTGTTTTG
TGTCGTACATACATCTCAACAACACCACTTGAAGAACCTGGTCGAGAGAA
ATGGGACAAGTACATTAGGAGTGTTTGGAATGATAAAAATTAAGACTTTC
AAGAATGGTAATTGCTTGACGAAGTGAACAATAAAAATGGATACCTGGAC
ACTAATTGGTCAAATGAATTTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046343-exon-scaffold_109-1491911889:28569..28602 | TCONS_00046343-exon-scaffold_109-1491911889:28569..28602 | Clytia hemisphaerica | exon |
| TCONS_00046343-exon-scaffold_109-1510915933:28569..28602 | TCONS_00046343-exon-scaffold_109-1510915933:28569..28602 | Clytia hemisphaerica | exon |
| TCONS_00046343-exon-scaffold_109-1575043694:28569..28602 | TCONS_00046343-exon-scaffold_109-1575043694:28569..28602 | Clytia hemisphaerica | exon |
| TCONS_00046343-exon-scaffold_109-1491911889:32101..32442 | TCONS_00046343-exon-scaffold_109-1491911889:32101..32442 | Clytia hemisphaerica | exon |
| TCONS_00046343-exon-scaffold_109-1510915933:32101..32442 | TCONS_00046343-exon-scaffold_109-1510915933:32101..32442 | Clytia hemisphaerica | exon |
| TCONS_00046343-exon-scaffold_109-1575043694:32101..32442 | TCONS_00046343-exon-scaffold_109-1575043694:32101..32442 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_109 | supercontig | scaffold_109:28569..32442 + |
Blast
The following BLAST results are available for this feature:
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