TCONS_00046486 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046486
Unique NameTCONS_00046486
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length423

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046486 ID=TCONS_00046486|Name=TCONS_00046486|organism=Clytia hemisphaerica|type=transcript|length=423bp
TTGACAAAAAGATGGTAGATGATGCTTCTAAAaaattatatctacagtat
tcttcaaattttcctAGAATATTTagtaggggtcacctaaattcttgagg
ggggggggactagAACCTGCTTATAAGCCATGTTAtactttattatttgt
ttttaatcCCCCAGATAATATCTTTTTACaagttattcttataataaaga
gcGTGTACTTTTTTGATTATTCAGGGACAGAAGTTGACTATCCTATTGAT
GTTGGGCCGATTAAAGCAGGGAAAGCAACCCTGCGCTGCATGCTTTTGTG
TTGGACAGGGGACTACCCGGCACAATGCCAGATTGGCAAATTCTCGAACA
AGGGTACTTTTGGTTGTCGTGTCGATGATTGTGAAGGAGTTTCAGTAGAA
GGGAGTAGAACTAAATATTACAC
Run BLAST on NCBI

transcript from alignment at scaffold_112:976..10418+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046486 ID=TCONS_00046486|Name=TCONS_00046486|organism=Clytia hemisphaerica|type=transcript|length=9443bp|location=Sequence derived from alignment at scaffold_112:976..10418+ (Clytia hemisphaerica)
TTGACAAAAAGATGGTAGATGATGCTTCTAAAaaattatatctacagtat
tcttcaaattttcctAGAATATTTagtaggggtcacctaaattcttgagg
ggggggggactagAACCTGCTTATAAGCCATGTTAtactttattatttgt
ttttaatcCCCCAGATAATATCTTTTTACaagttattcttataataaaga
gcGTGTACTTTTTTGATTATTCAGGGACAGAAGTTGACTATCCTATTGAT
GTTGGGCCGATTAAAGCAGGGAAAGCAACCCTGCGCTGCATGCTTTTGTG
TTGGACAGGGGACTACCCGGCACAATGCCAGATTGGCAAATTCTCGAACA
AGGGTACTTTTGGTTGTCGTGTCGATGATTGTGAAGGTAAAAagaagttt
gttttcaagtttacTGTTTGTAACACTTGTAACANNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTCTATGAAGATT
TCTATGAAGATTTCTATGAAGATTTCTATGAAGATTTCTATGAAGATTTC
TATGAAGATTTCTATGAAGATTTTTCTTATTAGTCACTCCCGGTGACTCT
TAAAATTGGTTCGACAATTTTACATACTACATGGTGTTCAtaaatatgta
ttttccaaaaatcaaaatgttaaaaacataacTAAAAGTTTCATGCACTT
ACGTACAATCATCAGATGATGATACATGGtgtttatattaaaaaaatccC
CAAAAAACGATAGTTTTGAACAACAATAGATTCTATTGTTTATCAAGGAA
TTTTTATGGTAGAAAAAGTAGATTTAGTTAGGTTCAGTGTTTGTTTCACT
CTAAATAGTTTCTGTTTAGTGTCTGGCAGGCTCTTCTAATGAATATCCAG
TCCCTTAGTacgctctgggtacgagattggaGTAAAATGTATTGTAAACC
AGGTATTCAATCAGCAGCATTAGATTAACTTAAGGCAATGACTGTTGTCG
AAAACCAACTTCTCCATTATTGCCTGCAGCCCCTTTATCAAaggaatgaa
ataaaaatacttaCAGCTTTTCTAAAGATAGCAGCCAAAAGGATTGCGAC
GATGACAGCTTTTAGTGGTTGAATGACCAATACGGATTGAAAGAATCCAG
CAAACATTGACGCAAGCCTATCCATGAAGTGAAAgagtaaaaaatgctgt
cacagAGATTGAACTACTCAGGGTGTATCTCATTTATAATGCAGTGAAGA
AGAATTCTGAAATTTTCGTATATATCGGGTCTGCTCACAGACAAAGATTA
AACCTACAATCtcagtcaaaatatattgagaattttggtcgATTCCACGT
TTTTAGCAATTACTCCAGGCGCTGGGGAAACTTTCGTATGCAAATCACTG
CGTACAGTTGAAACCTTTTGATTCGTGTTATGTATGGTCTAAAGTTTCTA
AAAGATTTGGTCCCGTTCCCGTGGGCGGTGGCACCAACCCTGGGAACGCC
CTTTTGGGCGTAAAGAATCGTTGCTTGGGTGGTTCCGCCAAAAGTGGTCA
TATTATATATCAATCGACGCGAAATTTTATACTGATTTNTCAAAAGTGGT
CATATTATATATCAATCGACGCGAAATTTTATACTGATTTGAAAAAAGGT
TAACGTTATGGGCAAAAAAATCGAGTGTTCAAAAGTTATTAACGTTTGAA
TGTGGAAGGGTAATTTATAGAATTATCTACTCGTATTAGCCATTTAAACG
TCATTAATGACTCAAAAGAGCAGATATTATAGATTAACACCTTTTTCTTa
acaattttttgtttctatttatttcacGATAATTGAATCATTTATTTGAA
TCATAAGTGAACCATtgatcttttttctaaaattttctttttcttaatgA
ATGGAAACGTCTCTTTACGCTGAAGAGGAATTTGAATTTTGTGTAGTANN
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TAAGAGTCATAAGTCAAAATAAAAGATGTTTTATCTCATAATAAAAGGCA
GCATGTGATACAAGTCAAATCTGAAGAAGATGGTAAAATGTTCCTTTCAC
TTGTCATGATTTAATTTTATAGGTTGAAGAAGAGATCAGTCGAAAGCCAA
ATGAAATTGCATCAATGTGTCCAGATAAGCGAAGCCTCAGTCATGTTCTg
gaatgtcaaaaattgatcAAAGGGGGCAAATTTTCCAACCGTGGTGTAAT
TCCAGCCGAGTTTGTAGTAGCCGAAAAAACAAATTTCGATGAAATAGAAG
AGAAAACCAATCGTGACTTTAAAATATGGTTAAGCGCAAGATGCATCGAT
CGAATTGACGACCATCCAAAGAACATACCAACCTTTTCAGCTATGAACAG
CTtgcttcaaaataaagaaattgtTAAAACTAAAATTGCATTCACCCCTA
TCCTGCCATACGTAGCAACAGAATATGACACAATCCATACAATAATGTGT
AATTTCCAAGATGTTCTTCGTCAAAAGTCTCAACCATACGGTCCACTCTG
GTGTGATGAAGGTGTGTATCGCCTGGCTAAAGAACTCCAGCTGCTCAACC
AAAATTGCTTTTGTGACATCTTTTTGGGACTCGGTGTGTTTCATATGGAA
AAAGTTCTGATCGCTTGTTGTGGAAAATATCTTGAGGAAACTGGCATTGG
TACAGTCCTGTCTGAGAACGAAGTTTATGGTCCTGAGAATGTAAAGTCTG
TCATGGATGGTGGTAACTATGTGCGCGGTGCCAGAGGTATGTCATTGATT
GCCGAAGTGGTCCAATCACTCAAGCTGAACCAATTTGCTAAACAAAATGG
GGTGAGCGTCTTCACAGAAACCGACCGAATCACAGAAGACATGCTAGAAA
GCaaaagtaaaaatgaaaaagatgacaCTTTGACTGATGCATTACTCCAA
CTAAATACGAAAGCATCCTCGAAAGAGTTTGAAACCTTCCAATCCAATGG
TACACAAAGTAGCCATCAGTTTGCTTTTTGGAATACCTTTCTCAGCACCA
TCTACCCAGCTTTACGTGACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNGCACTAAGACGTCTGCATTAAAAATGGCTTCAACGGGAAACTT
CTCTGGTTTAATTGCCTTCGGTCAGTCTGAGATTATTAATCAACGTGTGC
TCGAAGACGCGGAGGATTTTCTGCTTCGGTGTGTCTCCAAAGATGTTAAC
TTCAAGACGTTCGATAGCCTTCGAAATTTTGTTTACTACAAAAAGGCTAC
TGAGGTAAACCTCGAAAGGCTGCCTTCAACATCTTCCAGTATCTACTTAC
ACATCAAACGGGCGTTCCTGCAAGCATTTATCTGGTTGCATGCTCCTTTT
TTGGCAGAGATGGATATCGACCCATTAAACTTTGGGTACAAGATGGAGGA
GGAAGATGTTGATTGTGAGGATATTAATCCTCAAATAGTCACCGATGTTT
TACCAGAAGACTTTCCTATGCCATGTAAATGTGTTAAGTGTGCAAAGGAA
AGATTAGAACTTTGTGATGTAATTCTGTAataattgcaaaattttgaaat
tttcatttccacGAATGAGGATATCAATAAAAGCTTTAACTTGGACTGAA
ATTGACCTAATAAATAGAATTCTATGATATGCCTAAACGTAATTAGACAT
ACAATAAGTATATAGTTCAAACAAAGTTgtatatagaaaaaaaatttgta
aacacttatttaattaaaaagttaaatattttttcacaacATGTTTGCCT
GACAACACGTTTACCTTGGATATTTCAAATGCTTATAACCTTTGAACACT
TGATCTTTTTGCCCATAAGATTAACCTTTTTTCAAATCAGTATAAAATTT
CGCGTCGATTGATATATAATATGACCACTTTTAGCGGAACCACCCAAGCA
ACGATTTTTTACGCCCAAAAGGGCGTTCCCAGGTTTGGTGCCAACGCCCT
CGGTAACGGGACCAAATTTTTTAGAAACTTCAGACCATACATAACACGAA
TCAAAAGGTTCCAACTGTACGCAGTGATTTGCATACGAAAGTTTCCCCAG
CGCCTAGagtacaagtcagaatcttcatttcaatgaaaacctccgttttg
ggggccatatactgtagtactcttaggttccaaataaacgggggggttgg
aaaatttttccagATTTCAATAaaggggggggacctaattgccggggggg
ttggaaattgtacttctgaaacccaaaaataaggtagaaataggctaaaa
tcaggctatttagagcaaaataaggggtcttctctttgacagctgaaaat
attcttagagattaataaacggggggggNgccttctctttgacagctgaa
aatattcttagagattaataaacgggggggggtcctaataaggtccgggg
ggttggaaaattttcgaaaaattaacaagtttatttggaacctaagagta
aacagctacaaaatttaaagtatcaaaaataagacaaaaggccaaaaata
cttttttagaGTATCAAGCCTGaaacaaaGCAGAGAAGTGCAACTGCTAA
AAGGCTAAGAGAGTTAAGACTTAAAAAATCTCCTAAATAGTTAACCAGTG
TATGataataagaaaacaaaaataagtttaaaacactaaaattcatggat
aaaataaattaaatgaataaataaattagcTCAAGATTTGGAAAGATTGG
CCAAAAACCCTTAGAAACAAGGAATCGAATTAGTTTGAAATGTAAGGTTT
TAATGAAATCGAGGAGGAGATTCAAACCAAATCTTATTGTGGTTTTTTCA
TCTTAGGAGTTTCAGTAGAAGGGAGTAGAACTAAATATTACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029671XLOC_029671Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046486-exon-scaffold_112-1491911889:976..1361TCONS_00046486-exon-scaffold_112-1491911889:976..1361Clytia hemisphaericaexon
TCONS_00046486-exon-scaffold_112-1510915933:976..1361TCONS_00046486-exon-scaffold_112-1510915933:976..1361Clytia hemisphaericaexon
TCONS_00046486-exon-scaffold_112-1575043694:976..1361TCONS_00046486-exon-scaffold_112-1575043694:976..1361Clytia hemisphaericaexon
TCONS_00046486-exon-scaffold_112-1491911889:10382..10418TCONS_00046486-exon-scaffold_112-1491911889:10382..10418Clytia hemisphaericaexon
TCONS_00046486-exon-scaffold_112-1510915933:10382..10418TCONS_00046486-exon-scaffold_112-1510915933:10382..10418Clytia hemisphaericaexon
TCONS_00046486-exon-scaffold_112-1575043694:10382..10418TCONS_00046486-exon-scaffold_112-1575043694:10382..10418Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_112supercontigscaffold_112:976..10418 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.331568	0.258486	0.600254	0.367288	13.218	11.3927	2.91869	7.78737	1.16889	1.40009	0.718656	0	0	0.911421	0.510179	0.5892	0.616471	0	2.10849	1.01278	0.615968	0	0.350754	0	3.36185	2.86781	0.544474	1.21302	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046486 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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