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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046530 ID=TCONS_00046530|Name=TCONS_00046530|organism=Clytia hemisphaerica|type=transcript|length=364bp
NCACAACAGAAATGACATTCTTTTCTCATCAACAAGGTATCCAATCTATT
CCACAATTTGTTTCGCCGAAATCACAAAGATCAACTGGCTCCTTACAGTA
CGACAAAATAATACAAGATATGGAAAAAATTCTTCTTGGGGATAGAGAAA
TCACTCCTGTTACACCCGTTGATAAACGCTTTGCTTGTCCACTATGTGGA
AAACTTATGCAAAATCCACTGCAGACTGACAGAGAGACATGAAGAAACAG
ACTGTCAATATGCAAGAACTGAATGCGATATTTGTAGGCAGAAAGTTCTC
AAGAAACAATTTGCAGAACATAGAGCAAAAGATTGCACTGGAAATTACGA
TGTTGAAATGGAGG Run BLAST on NCBI transcript from alignment at scaffold_113:188845..191713- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046530 ID=TCONS_00046530|Name=TCONS_00046530|organism=Clytia hemisphaerica|type=transcript|length=2869bp|location=Sequence derived from alignment at scaffold_113:188845..191713- (Clytia hemisphaerica)
NCACAACAGAAATGACATTCTTTTCTCATCAACAAGGTACTTTTATTCAG
GCCGTATTTTACTGGTTTTTACCTTTACTGTATATGTTTTGCGGTTCAAA
CGATTTTTCATATGATGGATAAATTCTCAATTATGTATTGTTCTATGTCA
GGTATCCAATCTATTCCACAATTTGTTTCGCCGAAATCACAAAGATCAAC
TGGCTCCTTACAGTACGACAAGTAAGCAGATTTTTTTAATTTCAATTTTT
TTCATTTTTTGTATTAAAATGTCTCTATATATTTTGTTCAAAAAATTAGA
NAATTTTTTTCATTTTTTGTATTAAAATGTCTCTTTATATTTTGTTCAAA
AAATTAGGTTAAAAAGTAGAACTCTAAAAAGTACAACACTCGCGAATCTC
GAAAAGGATAATTCCAGATTTCAGTATTTTGATATTTTGAAAGTCTATAA
TTTCCCAAAGGATGGCTCTTCGGTTTTCCCCTTTGATGGTTAAATGGAAA
TTTTGCCGAGGCGCCATCTTATGATGACGTATCCGATAGCCAATCAAATG
AGCGAGAGAATAAAGGGAAACTCCAAAGTTTTGTTTTGAAAATCAAACCG
AAAGTTCTTTTTTTTTGACGTTTTGCACTTGGGTTTTTTCAAATGAACTT
TGCTGGATGATGGTTTTTATTTTTTTTGGAGTTCTTCCAGGAATTGTTTA
AATTCTAAAAATAGGATCTTCTTTTTTAGAATAATACAAGATATGGAAAA
AATTCTTCTTGGGGATAGAGAAATCACTCCTGTTACACCCGTTGATAAAC
GCTTTGCTTGTCCACTATGTGGAAAACTTATGCAAAATCCACTGCAGACT
GACAGAGGTACAATACACCTTTCCCGTAATTCAAATTTCTCAGAAATGGC
CCGGGAAAATGTGCGCTCCACCGTTGTGTATAAAATTGTTTAGGAGGTAA
AAAACGCGTTTTTGCCTGCGAGGGGTTAGGGAAAGTGGGATTTTAGCCTC
TAACTTTTGACAGCGACCTTCTTTTGGCAAAATATTTTCAGGGTGGTATA
ATATCATGAATAGATTGAACATACTAAAATTTGAGGGGATTTTGTTCGAC
AGAACTTATGAAAAGCTCAAAAAACCAACTTTCCCTAAGGGAACGCAGGC
AAAAACGGGTTTGTTTACCTCCAGAGACCAAACGGTGGAGAGCATCAAAA
TAATGCGCGCGCATTAGTTTTACGAATTACGGGAAAGGTGTATTCCTTTA
TAAATTACCAGGTTGCATGTTACTTCAAGTTCTGTAGCATTACTTTATAA
GCGGCCTAGTCAATTCCATTTTTAATCATACCAACCATGTCAAAGTCAAA
GATATGATAATTATATCTGGATAGCTTCAACTCTTGGGCCTTGTCGTTCA
GAGTCTTGTTTGACAGATATCCTTGCCTTGTTTTGAAGTAGATATTAGCT
ATTGTATTGTTTGTAATTTATATTTTTTAGACCTTTATATTAATCAAGAT
GTCCTGAAAACCTTCAATTACCCCCTTGAAAAATCTAAGATTTGACCCCC
AACTCGGGAAAAGTTTGTTGACAGTAATACACCCCTGTATGGTTTTTAAA
ATGAAATACGCGTTGTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAACTTGTTTTCTTATTCTCAGCCTGAGC
AGTTCCTTAACAATTCCTTATTTTTTGGACCATTTTCAGCCTCGAGTTCC
TTATAAACGTGTTTCTTATAAAAAAAAAACGTGTAGCCTAATGCATAATT
ATAATAGTGCACAAATTTTCCTCTCATCATTGTTTTGGTGTTTGAATTTT
TAATTATTCAGTATAACATTGTGGTAAACAAAAGGTCTACTGATTTTTTT
AAAGGAATGGTGGCCTGTACCTCATGCTATGAAGATAGACGCAGAGAAAT
AGGCTCTGAAATATGTCCACTTGATGGGGAAAAAATTGAACATGACAGTT
TTACAAGACTAGATAAATTCATGGTCAGAGAAATATCCAAAATCCAAGTC
CAGTGTTTTTATGAAGAATGTAAATGGAAAGGAGCACTCAATGATATAAA
TGTAAATATGCTCATTTCAGTTAAACGTCTTTACAATGTTTTGAATACTA
CACTTAACATAAGTTTGTCTAATTTCGTCATATCTCATCTAATTCTGACT
ACCCTTTTTTAGAGTTGAGAACAAAAGAAAGGTCAAAATTGCTGATTGAC
TTGCTTAGCAGTAAAGGGGAAGAAATCTATTTTAATCGGTGATTCTGACC
TTCCTATTATTCCCATCTCTAAAGAAGGGTGTCGAAATTAGATGCGGCAT
GTCGGTCGGGTGTAATTTCTATTTCTATCCATTTATTTTCATAAGCCTAA
AAAAGCTAACATCGCAAATAGAGACCAACTTAAGGTAGTAACATTGAAAA
TTTAGTAACATCATATTTTTTGAAAGATTTTGTCACTATTGTCAATTCTC
AGATTTTAAATATTTGCTATTAATACCTTTTATTTCCAGAGACATGAAGA
AACAGACTGTCAATATGCAAGAACTGAATGCGATATTTGTAGGCAGAAAG
TTCTCAAGAAACAATTTGCAGAACATAGAGCAAAAGATTGCACTGGAAAT
TACGATGTTGAAATGGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046530-exon-scaffold_113-1575043694:191678..191713 | TCONS_00046530-exon-scaffold_113-1575043694:191678..191713 | Clytia hemisphaerica | exon |
| TCONS_00046530-exon-scaffold_113-1575043694:191493..191562 | TCONS_00046530-exon-scaffold_113-1575043694:191493..191562 | Clytia hemisphaerica | exon |
| TCONS_00046530-exon-scaffold_113-1575043694:190857..190984 | TCONS_00046530-exon-scaffold_113-1575043694:190857..190984 | Clytia hemisphaerica | exon |
| TCONS_00046530-exon-scaffold_113-1575043694:188845..188974 | TCONS_00046530-exon-scaffold_113-1575043694:188845..188974 | Clytia hemisphaerica | exon |
| TCONS_00046530-exon-scaffold_113-1510915933:191678..191713 | TCONS_00046530-exon-scaffold_113-1510915933:191678..191713 | Clytia hemisphaerica | exon |
| TCONS_00046530-exon-scaffold_113-1510915933:191493..191562 | TCONS_00046530-exon-scaffold_113-1510915933:191493..191562 | Clytia hemisphaerica | exon |
| TCONS_00046530-exon-scaffold_113-1510915933:190857..190984 | TCONS_00046530-exon-scaffold_113-1510915933:190857..190984 | Clytia hemisphaerica | exon |
| TCONS_00046530-exon-scaffold_113-1510915933:188845..188974 | TCONS_00046530-exon-scaffold_113-1510915933:188845..188974 | Clytia hemisphaerica | exon |
| TCONS_00046530-exon-scaffold_113-1491911889:191678..191713 | TCONS_00046530-exon-scaffold_113-1491911889:191678..191713 | Clytia hemisphaerica | exon |
| TCONS_00046530-exon-scaffold_113-1491911889:191493..191562 | TCONS_00046530-exon-scaffold_113-1491911889:191493..191562 | Clytia hemisphaerica | exon |
| TCONS_00046530-exon-scaffold_113-1491911889:190857..190984 | TCONS_00046530-exon-scaffold_113-1491911889:190857..190984 | Clytia hemisphaerica | exon |
| TCONS_00046530-exon-scaffold_113-1491911889:188845..188974 | TCONS_00046530-exon-scaffold_113-1491911889:188845..188974 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_113 | supercontig | scaffold_113:188845..191713 - |
Blast
The following BLAST results are available for this feature:
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