TCONS_00046534 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046534
Unique NameTCONS_00046534
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1525

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046534 ID=TCONS_00046534|Name=TCONS_00046534|organism=Clytia hemisphaerica|type=transcript|length=1525bp
aatctagctttcataaaaaatgatcttaaagaaattaaaaatgaaaacga
aATGATGAGAACGAGCTTGTTGACCAGTTGATGAAAttgtaatgacgtca
tcaacagTTCGTTGCCGATCAGTGCTCTTGTTGCAAAAAGAATTGTTCAA
AATAAACCAATCAAAAGTATGGGGTATCGAAGTTGAACCAATGAAATGCG
AGGACGATGATGGCGAAGAGGATGTTTTTCGTTGGAATGTTCTTCTTTCT
GGGTTGAAAAAGACACCATGGAAAGGTGGTCGATTCAAGATCGTAatgga
atttgataaagatttCGATGCCATTCCTCCGCGTATTTCGTTCGCTCGAC
CCATTCCCCAACATCCTAATGttTCCACAACTGACGGGCAAGTTTGCCTT
GGTTGTTTGGAAGAATGGAAACCAAACACTTCACTAGCCTCTGTACTCAT
CTCTATCCAACAATTACTATCAGAGCCTTGGTTTGAAAAAGCCTGGAACG
AGGATGCAGTTCATATTGCCATGGAAACACCTAAGCAATACAAACAAATG
GTTTTGGATAATGTGATGAATAGTAAACGTGGAGTGGTTGTAAAGGACCC
AACACCTGCTGCAGCAGAGAAGGAAACCTCACCGAAACACAAAACCATCA
CTTTCAAAGAAATCTCCTCGCCTACACTTCCCGCAAATAAGAAAAGTTCG
GAAAGGCTATCTTATGAGAGTTATTTGTACGATTGGAGGAGCTTGGGGAC
AACACATGATGAAATTGATGCCAATACTGTCACGAAAGAATTGAACAAAA
AGTTAGACATGTCCGAGGGATCTCTCCAAGAATCAATGAGTGAAACGATT
TTCCAACAACTTTCCGATCACCGCAAAATAACATACGGTAGTTTCAATTC
CACAACGGAAGATGAAAAAGCAGTCAAACGTGCTCAGTTATTGAAAGACA
ACAAAATCAAGTTGTTGAAAGATCTACATTCCAACAAGAAAGGAATCAAA
AGTTTGAGAGTGTCGTTACCAACATCGCCGGCAAACAGTCCTGTAGAAGA
CTTGTTCGACGAATCAAACCAAGTTACTGAATCACCCAATGAAATTGAAG
CACAACAATTGTTGGAGTGGAGTCAAAAGCTCCCTGAGAAGCATACCTTA
TGAATGGTGTAAGAAGGTGAGGTAAAATTTTTATTCAGTCAACAAAGGTA
TGTTATTTCATTAACTGTCcaaggcttttccagaaaagacACTTTATACC
CCTTTTAAGGGTATTGattatttaaaacaatagaGTACTTCAAAAATATC
CTCAGGCCATTGAATCCAGCTGGATATTCACTTTCTCGTAGCCCCTGGTT
TCCTGATAATAGTAATTTTGGTTAAAAGGATTTGCTGGAAAGCCTATTTT
CATCCAGATAATTTATtcatttaatattttattttcaatttgttattttg
ttaattCTATGGGATGTTTTTTTAACTTCGAGGTTTTTTAAATTATAGAT
TGTaaatttcagtattttagtgGTT
Run BLAST on NCBI

transcript from alignment at scaffold_113:238821..261262-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046534 ID=TCONS_00046534|Name=TCONS_00046534|organism=Clytia hemisphaerica|type=transcript|length=22442bp|location=Sequence derived from alignment at scaffold_113:238821..261262- (Clytia hemisphaerica)
AATCTAGCTTTCATAAAAAATGATCTTAAAGAAATTAAAAATGAAAACGA
AATGATGAGAACGAGCTTGTTGACCAGTTGATGAAATTGTAATGACGTCA
TCAACAGTTCGTTGCCGATCAGTGCTCTTGTTGCAAAAAGAATTGTTCAA
AATAAACCAATCAAAAGTATGGGTAAGTAACATCCAAGACATTATGTCGA
TACTACAATCAAGATCAAAATATATTGAGAATTCCGGTTATTTTAACGTT
TTTCAAGATTTAAAGTTCCGGCGAGAAAGTCGATTTTGGGTTATCTCTTT
AATTTAATCGAATATTTCAATTTGGGATGGGTTGGCAAACTTCCAGGCTA
TTTTCTGAGCCTTATTGGACTATTTTTGAGCTTTTGGATCCTCAGATCCT
AAGGTCTTAAGTCCTAAGTCTAGCGTTAAAACTCAGAGTTAAAACTCTAC
GCTTCGAACCTACTTTAGAGCACTTGCAAATCGATTGCGGTTTCAAAACT
TCCTGGGGAATTTCCTTTTTTTTCAAATATTATGACCTTGATTGTAGAAC
TATTTAAGTAACGGTTTGGGATAAAAGCCTCTTGATTATCCTACTCCAGA
AGAAATGTTCTGGAGTTATTATAAAATACTTCATTAATTGGTAATTTAAA
GTAATAGAGATGACGCGTTCTTTAGAAAAAGTAACAAAATTGTTTTATTA
CAGGCTAACGACCAACCAAATCAAAAAAGAGCTTGTAAAAACTCCAGATT
GTCCCCTCCAGAAACGGACAACGAAATAAGTACTTAGTTTATCAAGTTTT
TGAATTAGATTCCATTGAACGGATCAAATGACAGTTATCAACCATTATCT
TTAATTTAACCTTTAATTCGTTTATTTGTTTATTTAAAGAGCGATATCGT
TTGCTTTACTCATCAATTTTAATTCACAAGCTTTTTGGTCAGCCTAAGCT
GAGCATTCAAATAGGTAAAATTTTCCAGTTCCATCATCATAAGACGGCAA
AAAAAAAATCCGATTTCCCGATCGATCTCNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTCCTGTTGAAATG
TTATAAATATGAACTACGTTTTGCAAAGATTTTGATGCAAATTGTGTTTT
TCTGGAGTTTGCGCTTTGTGACTTAAAGTTTGTACCTTGTTAGTTTAATG
TGTTATTGGAGTTTTATCAAGTAAAACAAAAAGTACAGTTTCTATGTATA
TTTGATGGATATCTTTATTTTGGTTCTGACGTTTTGGCAATTTTCTAATT
TATTTCTAGATAACACTTTGGTCAGATATGGATATTGTCTACACCCAACA
GAAACAAGACGACTTAAAGTCGAAAATTTCGCATAATATTAGAACATCAA
CGACGAAGACGTGAAGCATTATGGATTTTGAATTAAGCGTTACACAAAAT
ATACACATTGTATTGTACACACAGGTCGTAGATACCCTGTTTTCTTATTT
CTCAATCCAATAAAAACAAAAAGATAAAATTAAAAAATGCGACTAAAAAA
TTCCTTTTTATAAGCGTTAAAAAGATCTTTTATATTCAGAATAAATCAGA
GAACTGCAATATACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNATGTTGTGTAAAATTAACTCTTTTTGTACTATTTACT
GAGCATTATCAATTTATTGGTGCATTCACTAACTACACAAACATAAAATA
ATTAGTAGTAAACGAATAATAAACCTCTTTAAAACTCTACAAAAGACCAG
AAAACATGATAGTTGATAAGAACTTATACAGCAGCAGCAATCACTTTTTG
AAAAAAGTTCTCATGATGAAGATGAATGTTTACAAAGGCCTGGTTACACG
TCTTGCACTAGAGTATTTTAATTATCAACTAAAGCGCTGTTTTTTTATCT
TTGTGAGTAAGTCCACCTTTAGAATATTGGCCGTAGTACGCCCGCAGCCA
AACACCCACGCCATAATTTGCGCCCAAAAAATTTTCTCGCCACACAGAAA
GACTATCGTAACACTTTCGCTATGCGAAATTAAAAATGTATCATAACTGA
CGGGAATGAAATTAACAAAAAGTTTTAATTGCACTATGTTTCTCTTTTAT
TTTATAGTAATGAACTATAGCTTAATTGTTTGATGTCGTAGAAAACGTGC
TACAATGCTAAAGAGAAGTATACTTTGATCTTCTCGTGGGGGGGGGAGGG
GTTGGAGGAGCTCTCAGGCTTGTTTTAAATAATTTTAAATCAAGTTATCA
AATGTTTCACATTTTGTACATTATTCAACATTTTTAGTCTACTCTGTTTC
AGTACATCTCTTACATCTGTTAACCCACTTATTAAAGCTATCTAGCTAAG
CTCTATTGGCTGACCTTCCAGCCTCGGCTGGTCTATTCACTTTGGATTGA
CACAGATGTGGAACAAGATTGGTCAGAAAGAGGAAAAGAAAAACAGTTTT
TTGCTTATATCAGCATAATATAACTATAGGCAGACACTGTGCTGATATGA
ATTATGTGTCTGATATGAAACGGGAACACTTATGTAAAAATAAAACCTTT
AACTCATTCTTTTCTTCTGCAACAACAGGGTATCGAAGTTGAACCAATGA
AATGCGAGGACGATGATGGCGAAGAGGATGTTTTTCGTTGGAATGTTCTT
CTTTCTGGGTTGAAAAAGACACCATGGAAAGGTAGCTGTCCCTTATATTC
GTTGTTTTTCCTATCTTGAGGTCAACTATATTAGCCCTTTAAAAACTGCC
GTTCGTATTTTCCTATTTGCCACGGCAAAAAATGAAGGTTCGACCTATTT
GCCAGATATGTCGACATGAGCGACCACAGAGTTTACCATCACATTTAGCT
TTATTTTCTGAAAAATATCAGAAATATAAGTGATATGTGTTTACTTTGAG
TTGAAAAGTGTATGATTATGAAAAACATCTTTGAAATATATTTTCATTAT
TCAATTGTGCTATTTAATGAAATCTAGTTCAAAATCGAACTTTCAATAAG
CTTTAAAAAAACCTCTGGCAAATAGGTCAAGATCTCTATTGTCGGCAAAC
GCCGACACCGGCAAAGAAATCGAAAATGCTCTTGTCGGCATATGCCGACA
GCGGCACGAAAAGGGTTGATAAGCTTAAGCTTGTTTTTCTTGGGTTTGTG
AAATACCATAGAAGATCTGAAAATAATAATCTTATAATTTATCCATTCAT
TCTGCTCTAAAGGGATACGATGAGTTTGTTAATCTGACAACATTGTTCAG
CTTAAACCTGTAAAACTGCGCCAGTGCCATCTTGTCTGTAAACGAAAACT
GCTTAAGCCTCCCCTGAGTGCCTCGATGGGTAATGATTAACACGATTAAC
GTTTACACCCCATTATTGCATCTTAGGGGGCGAATAGATTTAAAAAACCC
AGCTTATCAAAGGGATCTTGAAACTCTTGATTTTTTTGCTTCGACCAATC
ATAACGCTCAATACTGTACCGTTTTCTCGTCGGAATATCGGCACTTTCAA
TATATATTACTGGCCTGTACTGGCCTCTCGGAAGTCCCCGTTCGTTAGAT
TTATGAATTGGTCACGAAAAGTATACTTTTTGCATTTATACAGGCACGAC
GCAACAGGTACGGCGGTCGCCGTTTCAGATTTTCACAAAAAAACCCGAAA
CTTTCCTCTTCGTCGGTATAACCGCTATAAAATCGCTAAAATTTCGTCAA
TCGCCGTACCAGATATAAAAAGCTTCCGTCGTGCCTGTTATATAAACTTT
TGAAAGATTCTAACACACGCTAAGAATGTGAAACAGAGCAGTCTGAGTTA
AATGTACTGTAATTTAGTACTCATGATTCGCGAAAATAAAGCATGAACAT
ACATGTTTTTCTATAAAAACAAACTATATAAGAACAGAAGGCTTTGGTGG
CAAAAATATTGGGAACAACTTAAGAACATTTCAAGGCTTTATAAACTCCG
AAAGGCCCTATTCCTAAGGAAAATACTCAAAAATACATGTTAGGAAAATC
TTTAGGCTTAAAACTCAAAAAGTTAAGGACATCCATAGGCTTCTAAAACG
TGCATTTGCTTCTTGAGAGCCCTCCTCTCATTATCTTTTCAGCTTTGTTT
GTTTTGATAAGCATAAACCAACTTTAAACCACCGACAGTGCGTAGGAAGT
TACTATTTGAACATGCGAACGGCTGAAATAATCAAAAGCTAATCATTTCC
ATTACCATCATAAAGCCATTTGTTTGCCTGTTTTGCACAAAGATAGCGAG
AACCAGCAGCGTGGTGGGTTGACAAAAATTCGGACAAACTGGGGAGGCAA
ATTTGGAATATTATGATTTTGGCGCCCCCTATGAAAAATAAATATGTTCG
AAGCGAGTACGAGGTATTAGACTCTTTTTGGCCGAAAACTGCCATATCTA
AGATGTAAAAGAGCAAAGGGCGCCGTAATTAGTAATCGCAGGCGTCCTTT
TGCGCCCTCTGTGTTTTGGCGCCCCCAAAAAATATCGGCCGCTGGGGGGC
ACTGCTTCCCCTCCCTTTGCCACCACGCTACTGGCGAAAACCCAACCCCC
CCTACTCGAATAATAATAATAATGCCCCCCCCCCCAATAATTTTTTCAAA
AATGGTTATTTTGCAAAATGCAAAGTTTAAAATTTTCTCAATTTATACCA
GGGCGTCAGTAAAATATTCCAAGACAAAACCTCAAATTGTATCCAGGACG
TTGTGCATAGGACGTCAAGTGAAATATTCCAAGCCATAATCTCAAATTGT
ACGAAGACGTCATGTGGAATATTGCAAGTCGTAATCTCAAAAATATACCA
GGATGCTGTGCCAAATATTTCATTTCGATATCGTGCTCTCTGCAGATTAC
TGACACACATTCTCATTATTTTCCCACGCATCCCATTTCTTATTCTTAGC
TACCTAAAAAAATTTAGAATAATAATCTGATAATTTTTACCGAGTACCTA
AAACTTGAATTTTTAACTAGGTAATGAACTTCTCGACAATTCAAATCAAA
ATGAGAATCCCAAATTTTGAGGAAGTGTGAAAGTTTTCTTACGGTAAAAG
CAGTTGTTAAAGTCCACAATAAACTTTGTTTGAAAGTTGTCAAAGAACTG
CTAACACCAGATGGAAATAACTTGAGTGGAGATATGAGAGTATTCATAGT
ATTCATAGAAATACACAAAGTGACTTACCTTATATTTTGTGTCTTTTTGC
TGTAGACTTCAGTTAAAAAATCAGTTAAAAAAGACAGCTTCTACAGAAAC
ATACTTGAGGAAAGAGTACTCCCTTGAACTAAGTTGTCTTGTAACAGTCT
CACTGGTTAGTCCAAGCAAAACCGCAAATTCTTTTTTATGCCAAACAGTT
ATCGTCCGTTTCTTCGAAACTTTCCCGCCGACTTTTTCCCGTATACCGCC
ATAACGCCATACCGCCTTATTTTCCCGCCTTTACTATCACTGTAACGGAC
GATAACATCGTCTAAGCTTCTTGTTACAAAAAAATATCAATTTCTTAGCC
GATGTGACAACATCAATCTGTATGTATTCCAAACAAACAAAAAGATTTGA
TTCACAAACTACATTCAAGGGGGCTGGGCGAGCTTTGCGAACAAGAGTTC
TATTGTTTATATGATAGAACCACTACAAAAAGTATTTTTCGTATAAATCT
ATTCCAATGGTTCTTTTTGATTAGTTGTGAAGCAGACAGCTACTGTATCC
AGACAAGATGGGGTTGGTTATTATGATATTTTTGGTTTTGCTGCCTTTTC
TATTCGGTGCTTCAACTGCTTCCGATTTAAACCAACTGAAAACTGAAATT
CAATCTTTGAAAACGCAGCTCTCTCAAACCAATAAAGTATTATTTTACTT
GAAAAGCTAAGACCAATACCTGAACGGGATTTGCGATTTAAAAGCCGATA
AATGTGGAACTTGTTTCTGCCGTCAGGATTATAATACTATCCAGAAATAT
TACTGTGACTGCAGAGCGAAGCCCGTGCGCCGTGACTGTAAGGATCACTA
TCAGTATGGGGAGCGTATCAACGGCTTGTATCGGATCAATCAAAACATAT
ATGGAGACATGGTACAGGTGTATTGTGACCAGACGACGGATGGTGGTGGT
TGGACCCTGATACAAAGAAGGGTTGATGGGTCCACTAATTTCTATCGAAA
CTGGACGGAGTACAAAATAGGATTTGGTAAACTTCACAGAGAACATTGGC
TTGGTAATGAACTGATTTATCGCCTGGTAGCACAAGCATTTCTCAGAGGA
TCAGAAGCACGTTTCAACTTGCAGGCTAAGGGTGTTTCGTCACGGATTTG
GGCTAAATATTCAACGTTCGAGATCAGTCAAGAATCGAATGGTTATCGAC
TTCACGTGGCAGGATACAGTGGCAATGCAGGTAAACTTTAAAAATTCCTT
TGAAGAAATTCTCGAAGTTATATTTTGACAGTCACGAAAGTTNGTGAAAA
TTTTACCTCCTTTCTGAAATTTTATTTTCCTTTCAATTAGTTTTTTTTTT
CCTTTCGTTTTTTCCCTCGAATCGTGTGAGTCATCTACGCGTAACATTTA
TTTTTGAGGTACAGGGTCAATTTTTTGCCACGATATCCTGTATTTTCCCG
CCTATTTTTATCTGTCTTGTAGCCCTTAAGTGTTTCATTCGAGCCCCTTC
CCATAAGATGAATCTGTTGAAAAATAGTTAGATGAGGGGGAGAAAATGTC
TACTTCGCAACATTACAGATACATGAAAAGGTTTTTTTATAAGAATGGCG
TTTTTCCATTTCATCATAGATATTCTTAACTTTTTTATTCTTCCGGTATT
CTTAGGTTAGGATCCAGATTCAAACAAGCGTGATACTCTTAGATTCCAAA
CAAACGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGGGGGGGGGGTTTGGAAATTTTACTTTTGAAAACACAAAAATAAG
GTAAATGTAGGCTTAAATCAGCCTAAGACTCACTAAAAGGTCCATTTCCT
CTTTGTGCAGGCAATAAAATGGCAAAGCATGATGGTTTGAAATTTACTAC
ATATGATCGCGATTCTGATACATGGAGTCCTGAAAACTGTGCTAAGGAAA
GACGAGGAGCTTGGTGGTATCATAAATGCACTGATTCAAATCTCAATGGG
TATTATGATACTTTTCAACAAAAAGATCACCATTACAGTTTGGCATGGGA
CCCGATGCACATCAAATTCTCGGAAATCAAGTTACGTCGAAAGTGAAAGT
CATGATATTCATGACGTAATGTTTTATACGAAAGATCCCGGTTTTTGCCA
GTAGTGGCAAATTTTATACAACTTTTGTCTAGTTTAAAGTTGCCACTACC
GGCTAAAACCGGGGTATTTCCGTAGAAAACATTACGTCATGAATATCAGG
AATTAACATCAATCTATATATCGGGGTTTGATTTTTTCAAAGTTGTATTT
TTAGATTTAGCTTGTTGTAGTTTAGCCACTGACAATATTGAAGGATTTAT
CAACAGAAGGGCAAGAAGATCAAAAAGTCGATAAACGTTTGGAAAAATTA
AAATTCAACTTCTTTTTATTTAAAAGGTCTTGTTATACATTTAAAATCAA
CCATATTGTTCATTTAATAATATTTTGAATTATTTTTCAAAATGTATCTT
TAACATTTCGTTAAAAATTTTGCCTTCTTCTTTCATTCCAATACTTTACT
TTCTTTATGAATATGATTTTGACCAAATTCACAAAAATTGGTTCTTACAA
AAAATAAAAAATATTACTGCTTTGCCCAACAGGGTCTCGACAAAATCATC
TTTGTTCAATAACCCTTAATTTTCTTGGCCAAAACGAGCCATCTTTCACT
AACACTCGCCAAAAAAAGTTCTTACCGAAATTTGAAAAAATTGCTTTTTC
ACCAATATACGTTCTCGACCAATTTGAATTATTCACTATTCCACTGAATT
TCTTCTATTTCAGCTGACAAAGACTTCATTTCTTCGTTTATATCAAAAAA
TATTTCATCCTGTGCATATTTCTCCAAGACATTCATTAAAGCGAAACTTT
CTTTATTTGTCAGGAGCTTGAATTTCTTTCGATAACTCAATTTTGAATAG
AATAATACTATATTTTTCTTGCCTAATTCAAACAAGCATTTTCGTGCCAC
CAATATTTTTGTTGATTTATTCAGCCAAGTGAATTCCTCAGTCATTTTTA
AAACTTGAAAAGGCTCATTCAAAACTTGAATCAGTTCTTTCCTCGTATAA
TCAAACCCCATCATTGATACGAGTTTTAGGAGCCTTAACTGAGATTGGTA
TGTTTCATCCCCAAATTCAATTTCTTCAGCAATATAGTTTCCGATTTTAT
CGATGATCCACTGGACTTGATATTCTTGACAGATCGATGTTAATGCGTAC
AAATCAACATCGCCTAAAAATGACATAAATTTTTAGATTTATTTCATTAA
TTTATTAGAAGTCACAAGCTCTGCATAAGTTGCTAATGCTAGACATTCTG
CATTTAGAAAGCCTGTAATGGGCATCTTGCCCTTTAAGGGCAGTGGACTT
TACTCACCCTTAGTGACCTCCCTCCTTTGTAGCTGATTGAGTCGCCCCTG
GCCCCCCTGCCACCACGCCACTGGTCGCAACCACAGAAGACCATACTAAG
GAAGACAGCTTTTCCATGAGAGCTCATTTCTCTCCTTTATCATCCTTTAT
TAATCCTAACTCGATCTAAAATTATTAGTCGAAGGATGAAACGAATTACT
ATAACTTACCATCAATTTCGCATGGTTTTGTCAGAAAGGTCAGGAAAAGG
AGCACTTCCTTGATGTTCTTCCAAGGTAGTTCCAATATCAATTCCTTATC
TCCAAGATTTTCAAGGCGTCTCTTGAAAACTGGTGAACTTTTTATCAAGA
TATGAGAACTGACGTACAGTTTTGTGCCGCTGACGATAATTGTCACGTCG
GTACCAAATTTCTTCTCCTCAAAATCGCTTTGTTTGATTTTCTCATAAAT
TCCATATTCAATTTGCTTTTTGAATTTCTTTTCGGCGTATTGGTCTACAA
CACGATCTTCATATATCAGAAAATTGAAGAAATTGATAATGGCGTAGAAT
TCACTTTTATCATTGGTTTGAGTGAGTAAATTTTCCATTTGTACTTTCCA
GATTTCAAATTGAACTTCCTTACTAATATCTTTCATACGGTCAGATTTCC
ATAACGAAAAGGGATCAGTCGTCTTTGTTAAGCCTGTCATGAAACCATTC
AGGATGTTTTCGAGTTTGAATCTTTCACAGATATGTAATATGTCGATATG
ATTGCAATCCAGTTCACCGTTGAAGTGTTCCAAACCAGACTTGTGGTCTT
GAGTCAAATATTCTTCGATTGATTTACGAAATGCATCCAATTCCCATTCA
TCACAGAGTGCCAGAAGTTCAGCAAATTGATCTTCATCTAAAAGGGATAA
GGCCGATAAGATATTGGAAGATAGTGTGAGAAATCCTTTTGATGTGTTTT
ATTGGCCCATTCCATTAAATTTCCATACAGGGGGTGGGCGATCCTTTTTA
AATAAAAAAACATGTCTTGGTAATGAACGGATAACCCCTGGAAAATGGCA
AAATTTTCAAAAAAAAATTTCATATCTTAAAATGACGATAAACAAACTAA
AGTCAGTCTTTTTCATCCTGTAAAAATGAAGAAAAATACTCTTTCAGACC
CCTCTGGACATTTTGCTTAAATTACTCCCTGGAAATGTTCGTCCACCCCC
TCTATGGGATAAAACGGAATGGGCCATTGTAAAGCTATACTCACATCGCT
GAAACCCCTCATCCCTCCCTCTGTCTGATCTGAGAGGTCAAATCTCAGCT
GGCACCTGATTTTTACCTGAGACCAGGGAGGGCGAAGGACCTGCCGAAAA
TATTCATTAATTATCTCAAAGGAAGGACTTTTGGCAGAAATTCAATTTGG
CGGATGGCGGAAAAAATAGATTTTGGCGGGAACTTAAGTAAATCCTCGAG
TAAATCCGCCAAATTCGTCAAATTTTCTTCCCGCCTAAAGTTCTTCTTTT
TAAATAAACTAAATCCTAATAGCCTTTAGGATCAACTGAAGCCTTCTTTC
AAGCTACTCATTAAATAAAGCCCTATTGTTTAATGATAATATTATTTGTG
CCTTCCCCAGAAGTTGTTCGATTTTATTATTGTGATTTCAGAGTTAATCA
ACCAGTACCTTTATTGAAAATTTCTTTTACCTGTAAATTTGATGTAGTTT
TGAGGATGATAAAATGAAATCGCTTGTTGAACGCTTTCCCATGTTACTTT
CAATTCGCTAACATCAATTTCTTTGCTCTCCTTGCAAGCTAAAGTTTTCA
ATTTTTCTGAGATGGAATCTATGTAACTGGCTGGTACTTTGACCACGTTG
TCATGTGTTATAACAGTGATGCCACAAATCTCGTCATCCAAATCGAATAT
AGTATTAACTCTTGGAGATGTTATGATTTCATTTTCTTCATCGTGATAGT
CATCCAAAGGGTCATAATCTTTCTCCCAGTATTCTTCTTGAAAATCTTCA
TAAGACATATCTCGGATTTTTAACCCTAAAAAGTTGTAGATGTAAACGTA
CTTTGACTTTTAACTGTTAATGAGTGTGGCTTTTATTTGACCCAATTGGT
TGGCGTAACAGCCAATCACCTTACCAACCAATCCTGATAAAAAAATCGAA
ATCGGTACTATCGCAAACCTAGTAGATCCATTATCAGGCCCGGCGGAGGC
GGAGAGACTGGGGAGACTTCAGCCTCCCCAACTTTGAGCAAATGAGATTT
TTTTCTCAAATTGCTGGCGAATTTTATCTCCTTTTGAGCCTTCAGCCTCC
CCACTCTTACTTACGATTGTTCCTCCGGGCATGATTATGGATCTTGTTTG
ATAATCAGCATCTGGTCAGGTAATTGAAGTACAATGGTGAAGGTTGACTT
CTTGCAAAAAAAAGAATTATCAAACCATAAGCTGTACAAGATGCATTGAT
TGCAAGATGACATGCAAGATTTTTTCAATTCCTTTACACGTTCTTTAAGG
TTTGGGGACACGAGAAGTTTTTTTCGCGTTGGTGCAATGTAACATACTTT
ATTCCACCAAGACAAGAAAAAAAGTGCGTATCTCATGGTTTCTTTTTTTG
TTTCATGGGACGAAAAGTGAGAGAAATACCCAAAAGACACGCTGATTTTG
TCCCTAGAACAAAAGTGAGAGAAGCACAAATGTTATTAAACGAAAACAAA
GTTTTCAATTTTAGCTTATAAGCTTGAGTTTTTATCCGCAATCGTATTTT
TCAACGACGATCGTACCTCAACAAAAAACTTACCACCAAACACACTTATG
CGTGTACAGTACACACTCAAAAAAGTGAAATGATATCTGCTTTGATAAAA
AATATCATTCCTCACGTGGTTTGTAAACAAAAGAGTTCTGAGAATTCGTA
TCAAATATCAGTTTGAAAATATCACATTATATGGTTTTACTTCTTGTCAT
TAATGAAGCAGTGAATTGAATACTGACATTCGTCATTCTGCTTTTGTTTT
GATTTCTCCGACCTTTTTCTAAGACGACTCGCCCTCTAAAAATGACTGAC
TGCTGCACCGTTTTATTTGCAATACATAAAACTCGTTAGCCTAGTTATAC
GAAGTTCTTAAGACCATATAACGATATCGGTGCTTTAAAGACTTTTTATA
TACTTAAGGGGTTTTAAGTCAATCTCCGAGAAGATTCTGATACTCCGCGT
ATTGCACGTATTCACTACGTTTGCACGTATTCACTACGTAAGACATTTGC
CATATCCCTTTAATGCGTCGTGTGTACAGAATGGATAATCTGTTATGAGA
TTGCTTATGAATTTGTATTTCTTGTCACAAAAAACCATCAGAGAGGAATC
CTGGTTACTGAATCAAACTAGCTTAGATTTCCAGGATACTAATAAGTCTA
TTTATCAACTATCAGCTCTTCCTTTTCTCACAGGTGGTCGATTCAAGATC
GTAATGGAATTTGATAAAGATTTCGATGCCATTCCTCCGCGTATTTCGTT
CGCTCGACCCATTCCCCAACATCCTAATGGTAAAAATGTTCAATCATATT
TTATCCTTCCTTACGAAGCGGGGTTATAAAGACATACACGTGTACGCCTT
TTTATAAGAGCAAGTATGACTTTGGGTGCGACTTGTATGTTCTTTATATT
TTTTTATTTTCACTCTTAAGTGCTCTTAATTGTTAAATTTTATTCACTTT
CAGGCTTAAACTTTTCTTAGTTTTTTCTAAAATCCGAAGCGAGATTGTTC
TTAATTTGTTCTTAGGTTTTCGTCAAAATCCAGCCTAATATTCTCATAAA
ATTGCCAGTAAATAACTGAACTAAAAGAATATTCTATCAACAACATCTTG
AAACCACCTGAGTTTTGTTTTTATAGTTTCCACAACTGACGGGCAAGTTT
GCCTTGGTTGTTTGGAAGAATGGAAACCAAACACTTCACTAGCCTCTGTA
CTCATCTCTATCCAACAATTACTATCAGAGCCTTGGTTTGAAAAAGCCTG
GAACGAGGATGCAGTTCATATTGCCATGGAAACACCTAAGCAATACAAAC
AAATGGTTTTGGATAATGTGATGAATAGTAAACGTGGAGTGGTTGTAAAG
GGTAAGACTTCAAGTTGGTATCTTTTTCAAAATTCGCAAGATAGGAATTC
ATGATCATATTCATTATACGTAACGATTTCTACGGAAATACCCAGGTTTT
TGCCAGTAGTATGGCAAATTTTAAACAAATTTTCTCAAGCTTATATTTGC
CACTACGGGGTATTTTCGTAAAAATACATTACGTCACGAGTATCAAGAAT
ACAGTTTTTTTCCTGATAAATCGGAAAAAACTCTTTATCGACGAAAGATA
ATTGTAAGATTAATCCCCTCGCTGAGTTTGGAATTAATAAAGTGAGATAA
AAATCCTCCGTTCTCACTATACATATATACATATGAAATTATCTAGTTAT
TCGTGCGATATCGATATGACCCATCAAGTAGCGTATACAAGGGAGGCGCA
AAATTTGTGTAGGAGAGCAGATTTTTATGACACAGTAATTATCTTTTTAT
ATTATAAATAGATAATTACTGTGTCATAAAAATCTGCTCTCCTACACAAA
TTTTGCGCCCCTCTTGTCTACGCTGCTGNATGGTGTAAACATTAAGGGTG
TCATTTGCCTTTTCACACCCGTGTGAAATACGAACTGAATCCCACTCTGG
GAAATCAGTTTTCACACAAGTGTGATTTAACGATTTTTTCCTGTGACAAG
GATCAGAAAGTGCGTAGAAAACCTTCCATCTTAAATCTTGTGTGAGTTCT
GAGGTATAATTAAACATTAACATTCAAATTTCATTCGCCAGACCCAACAC
CTGCTGCAGCAGAGAAGGAAACCTCACCGAAACACAAAACCATCACTTTC
AAAGAAATCTCCTCGCCTACACTTCCCGCAAATAAGAAAAGTTCGGAAAG
GCTATCTTATGAGAGTTATTTGTACGATTGGAGGAGCTTGGGGACAACAC
ATGATGAAATTGATGCCAATACTGTNTTGGAAAATGGACTTTTAAAACCC
CTAAAAAGTGTCAAAATAGACTAAATTTAGGCTTTTTAGCGTAAAACAAG
AGACTTTCCTTTTCGGAGCTGGGAATTTTTTCAAAAATTAACAAACGGGG
GGGGTCCAAATAACGTCCGGGGGGGTTGGAAAAAAATCGAAAAATTAACA
AGCGGGGGGGCCCGTTTATTTGGCACCTAAGAGTACAGTGTCATAAAAAT
CTGCTCTCCGCCTACACAAATTTTGCGCCCCCCCCCCTTGTCTACGCTAC
TGCCCATCAGGTTGTTGCAATCATTAACCGCACCTAATCATATACATTTA
CAGCACACACAGGAAAAAATCGTCAAATCACACTCGTGTGAAAACTGATC
TCAGTGATCCCACAGTGGGATTCGGTTCGTTTTTCACACGGGTGGGAAAA
GGTAATTAACACCCAATGTGTTTGTCTCATGTCGAATTAATTATCAAACT
AAACGCTCAATCTGCAATGACAATCTGACTTAATTCTTCTTAAATTTGAG
GTGTTTTAGTCTGATACTCAATTCAATATGGTGTAAACATTAAGGGTGTC
ATTTGCCTTTTCACACCCGTGTGAAATACGAACTGAATCCCACTCTGGGA
AATCAGTTTTCACACAAGTGTGATTTAACGATTTTTTCCTGTGACAAGGA
TCAGAAAGTGCGTAGAAAACCTTCCATCTTAAATCTTGTGTGAGTTCTGA
GGTATAATTAAACATTAACATTCAAATTTCATTCGCCAGACCCAACACCT
GCTGCAGCAGAGAAGGAAACCTCACCGAAACACAAAACCATCACTTTCAA
AGAAATCTCCTCGCCTACACTTCCCGCAAATAAGAAAAGTTCGGAAAGGC
TATCTTATGAGAGTTATTTGTACGATTGGAGGAGCTTGGGGACAACACAT
GATGAAATTGATGCCAATACTGTCACGAAAGAATTGAACAAAAAGTTAGA
CATGTCCGAGGGATCTCTCCAAGGTAAGATGAATCTTTTATTTACGGACA
CCCTCTATAGTTATTAAGCTTTTTCAAATCCCAATCTTTTTTTCCACTAT
CGAAAACTAAAAATTAGGTGTTTGTGAAAAAAACCATTATCCATGAAGGA
TATGCGCAGTAGTGTAGTGGTTGTCAATCTTGACAGCCGTCCAGGAGGTC
GGGGTTAGATTCCTGTTCGGTGCTGTGACTTCGCAAATTAATGTACCTTC
ACCCGGGCCAACCCTTGCTATGCGAGGGAAATACACGGGTTGCAAAATGA
TAAGAGTGTAGTCAAAACATGCGATTACTCGAAAAAGTTCACGTGAGTTT
ATTCCTATGTTACTTGCTTTGCAGATGATAACTTTATTAGTGTCAATAAA
TTTGAACCAATCAGAAGTAAAAGTCATGCAACAAGCACATAAAAATTTCG
AGTAAAAGCGTGATTTGTCTTCAGACTTTTATTTTGCAACCTGTGTATTG
CCCTGTATTGGGTAGACAGAAACTCCAGAAGCCTGTCGGTGACTGCTAGG
TATCGACTCCACAATTACCGTTGATAAGGTGAGAGTGCGCTGGCCTTGTT
CCCTAGTGGTTCACACTATGTGTACACAATTTTAGATAGGTTGTAATATC
TTTCCCATAGAATCAATGAGTGAAACGATTTTCCAACAACTTTCCGATCA
CCTATCTTTCCCTTAGAATCAATGAGTGAAACGATTTTCCAACAACTTTC
CGATCACCTATCTTTCCCATAGAATCAATGAGTGAAAAGATTTTCCAACA
ACTTTCCGATCACCTATCTTTCCCATAGAATCAATGAGTGAAACGATTTT
CCAACAACTTTCCGATCACCTATCTTTCCCATAGAATCAATGAGTGAAAC
GATTTTCCAACAACTTTCCGATCACCTATCTTTCCCGTAGAATCAATGAG
TGAAACGATTTTCCAACAACTTTCCGATCACCTATCTTTCCCATAGAATC
AATGAGTGAAACGATTTTCCAACAACTTTCCGATCACCGCAAAATAACAT
ACGGTAGTTTCAATTCCACAACGGAAGATGAAAAAGCAGTCAAACGTGCT
CAGTTATTGAAAGACAACAAAATCAAGTTGTTGAAAGATCTACATTCCAA
CAAGAAAGGAATCAAAAGTAAGAGGATTTCTTGGGTTGAAAATGAAATCG
AAATTAGGCATGCCAATTTATTGTAAAAGGAAAAGAACTGTATCTTATAG
GATGAATTCTGGAACGTCACGTGATCTATTTCTAACGATTTAATTCGTTG
GAAACCATTTCAATGCAAAACTCCTTTACTCACCATGCATAGCCACACCA
GATATAAATTCCTTTTTCTAGCCTTGAGTAAAACCTCCAAATATTTGTTG
CCACATTTTTGTCCAAAGTTGAGATCTCAAAATTTTAAATTTCTAAAAAT
GAGTTCTTAAATGGTTCTAACTAAAAGTCAAAAACTTGTAACTCTCAAAT
TTGGAAATTAATTAGGCCAAGTATTTGGAGGTTTTGCCTTAGAAGGAATC
CATATGCCAAATATCTACAAGTATCTAAAACCATCTGTTTATCCATTGAA
TACTTCTTGAGCTCAATATGATAAAGAATCCTATCTGAAATCATGGACAA
AATATTTGAGACAAAAGGGAGTTCCCGGTGAAATTTTAAACACCACGAAT
GATTTTAAGCGCCTTAAACTACAGTTGGAAAGTAGAGTTTTAACATGAGA
CTTAAGGCTTAGGACCTTAGGATCTCAGGATTTAAAAGCTCAAATTTGCT
CGAATAAGGCTTGGAATATAGCCTAGAAGCCACCAAACCCCTCTAAAATC
GATATATTTAATGAAAGAAAGTGGAAGTGCTAAAATAGCAATTCTCGCCC
AACTTTAAATTCTGAAAAACGTTAAAATCACTAAAATCTCAATATATTTC
GACCATGATTGTACACAGGTTTGAGAGTGTCGTTACCAACATCGCCGGCA
AACAGTCCTGTAGAAGACTTGTTCGACGAATCAAACCAAGTTACTGAATC
ACCCAATGAAATTGAAGCACAACAATTGTTGGAGTGGAGTCAAAAGCTCC
CTGAGAAGCATACCTTATGAATGGTGTAAGAAGGTGAGGTAAAATTTTTA
TTCAGTCAACAAAGGTATGTTATTTCATTAACTGTCCAAGGCTTTTCCAG
AAAAGACACTTTATACCCCTTTTAAGGGTATTGATTATTTAAAACAATAG
AGTACTTCAAAAATATCCTCAGGCCATTGAATCCAGCTGGATATTCACTT
TCTCGTAGCCCCTGGTTTCCTGATAATAGTAATTTTGGTTAAAAGGATTT
GCTGGAAAGCCTATTTTCATCCAGATAATTTATTCATTTAATATTTTATT
TTCAATTTGTTATTTTGTTAATTCTATGGGATGTTTTTTTAACTTCGAGG
TTTTTTAAATTATAGATTGTAAATTTCAGTATTTTAGTGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029700XLOC_029700Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046534-exon-scaffold_113-1575043694:261091..261262TCONS_00046534-exon-scaffold_113-1575043694:261091..261262Clytia hemisphaericaexon
TCONS_00046534-exon-scaffold_113-1575043694:253332..253434TCONS_00046534-exon-scaffold_113-1575043694:253332..253434Clytia hemisphaericaexon
TCONS_00046534-exon-scaffold_113-1575043694:243784..243879TCONS_00046534-exon-scaffold_113-1575043694:243784..243879Clytia hemisphaericaexon
TCONS_00046534-exon-scaffold_113-1575043694:243212..243436TCONS_00046534-exon-scaffold_113-1575043694:243212..243436Clytia hemisphaericaexon
TCONS_00046534-exon-scaffold_113-1575043694:241290..241523TCONS_00046534-exon-scaffold_113-1575043694:241290..241523Clytia hemisphaericaexon
TCONS_00046534-exon-scaffold_113-1575043694:240146..240316TCONS_00046534-exon-scaffold_113-1575043694:240146..240316Clytia hemisphaericaexon
TCONS_00046534-exon-scaffold_113-1575043694:238821..239344TCONS_00046534-exon-scaffold_113-1575043694:238821..239344Clytia hemisphaericaexon
TCONS_00046534-exon-scaffold_113-1510915933:261091..261262TCONS_00046534-exon-scaffold_113-1510915933:261091..261262Clytia hemisphaericaexon
TCONS_00046534-exon-scaffold_113-1510915933:253332..253434TCONS_00046534-exon-scaffold_113-1510915933:253332..253434Clytia hemisphaericaexon
TCONS_00046534-exon-scaffold_113-1510915933:243784..243879TCONS_00046534-exon-scaffold_113-1510915933:243784..243879Clytia hemisphaericaexon
TCONS_00046534-exon-scaffold_113-1510915933:243212..243436TCONS_00046534-exon-scaffold_113-1510915933:243212..243436Clytia hemisphaericaexon
TCONS_00046534-exon-scaffold_113-1510915933:241290..241523TCONS_00046534-exon-scaffold_113-1510915933:241290..241523Clytia hemisphaericaexon
TCONS_00046534-exon-scaffold_113-1510915933:240146..240316TCONS_00046534-exon-scaffold_113-1510915933:240146..240316Clytia hemisphaericaexon
TCONS_00046534-exon-scaffold_113-1510915933:238821..239344TCONS_00046534-exon-scaffold_113-1510915933:238821..239344Clytia hemisphaericaexon
TCONS_00046534-exon-scaffold_113-1491911889:261091..261262TCONS_00046534-exon-scaffold_113-1491911889:261091..261262Clytia hemisphaericaexon
TCONS_00046534-exon-scaffold_113-1491911889:253332..253434TCONS_00046534-exon-scaffold_113-1491911889:253332..253434Clytia hemisphaericaexon
TCONS_00046534-exon-scaffold_113-1491911889:243784..243879TCONS_00046534-exon-scaffold_113-1491911889:243784..243879Clytia hemisphaericaexon
TCONS_00046534-exon-scaffold_113-1491911889:243212..243436TCONS_00046534-exon-scaffold_113-1491911889:243212..243436Clytia hemisphaericaexon
TCONS_00046534-exon-scaffold_113-1491911889:241290..241523TCONS_00046534-exon-scaffold_113-1491911889:241290..241523Clytia hemisphaericaexon
TCONS_00046534-exon-scaffold_113-1491911889:240146..240316TCONS_00046534-exon-scaffold_113-1491911889:240146..240316Clytia hemisphaericaexon
TCONS_00046534-exon-scaffold_113-1491911889:238821..239344TCONS_00046534-exon-scaffold_113-1491911889:238821..239344Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_113supercontigscaffold_113:238821..261262 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.0208	15.6977	15.5321	15.3183	10.7984	8.12595	9.47198	9.50935	9.41419	9.10312	8.02998	8.91194	2.56391	2.57885	3.53381	4.15626	4.74578	5.39003	3.224	3.92385	3.16693	3.33735	8.42308	7.79633	22.2872	17.1986	8.24338	5.75377	6.2238	5.91427
Blast
[Close]
BLAST of TCONS_00046534 vs. Swiss-Prot (Human)
Match: UBE2U (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.406e-18
Identity = 45/149 (30.20%), Postives = 80/149 (53.69%), Query Frame = 2 
Query:  116 RSVLLLQKELFKINQSKVWGIEVEPMKCEDDDGEEDVFRWNVLLSGLKKTPWKGGRFKIVMEFDKDFDAIPPRISFARPIPQHPNVSTTDGQVCLGCL---EEWKPNTSLASVLISIQQLLSEPWFEKAWNEDAVHIAMETPKQYKQMV 553
            R+ LLL ++   + ++   GI  +P+        ED+  W V + GL+ + W+G  F++ + F  +++  PP + F   IP HPNV    GQ C+  L   E+W  N +L+S+L+++Q +LS P  E   N +A  I ++    Y+ ++
Sbjct:    4 RAYLLLHRDFCDLKENNYKGITAKPVS-------EDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFIT-IPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTIL 144
The following BLAST results are available for this feature:
BLAST of TCONS_00046534 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBE2U4.406e-1830.20Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens ... [more]
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