TCONS_00046541 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046541
Unique NameTCONS_00046541
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length656

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046541 ID=TCONS_00046541|Name=TCONS_00046541|organism=Clytia hemisphaerica|type=transcript|length=656bp
ttctttcagatttttttttgaaataattatatTACAAAATCATAATGAGA
TTGACAAATATCATAACAACAATTTGAAGATATGGGCAAGAGGGATACTA
GAGTGgcatttGTTAACCCTGTTGCAGCTTCAAGGTCCTCAGGGCCAGCT
CAGGGTGGTCCAAGTATCAAGGATTATCTCAGTCGTCCGAGACCTTCATG
GGATGAATTGAAAGAACAAATCAAAGCAACAAGAAAAGGTTCAAGAACTC
TtgaacaatttgaaaaagaaagaaatatgGATTACAGAGCTGAGCTTGAC
AGAGGCagagaaaagtttttcaactctgaaaagAAGaaaaagagaaagaa
aaagcgCACCCGTTCTTCCTCTTCTTCCTCTTCTACACGTTCATCATCAA
CTTCATCAACAAATTCCTCAATCAATAACAGAAGACACAAGaaatccaaa
aagaaaaagaaaaagcatcACAATAAATCAAAGAGGAAAGAGCAAAAATA
TGAGAAATCCGAGTCAGAATCAAGCAGTGGCGAAGACTGGGTGGAACAGG
AAAATCATGGACATTTGAACAGAGATGAGAGTAGAAATAACTCAGACACA
GAAAGGCATGGTGAAAAGGTGTGTTGAATCTCCTCAGACTAAATTGATTT
CTATTC
Run BLAST on NCBI

transcript from alignment at scaffold_113:267841..273855-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046541 ID=TCONS_00046541|Name=TCONS_00046541|organism=Clytia hemisphaerica|type=transcript|length=6015bp|location=Sequence derived from alignment at scaffold_113:267841..273855- (Clytia hemisphaerica)
TTCTTTCAGATTTTTTTTTGAAATAATTATATTACAAAATCATAATGAGA
TTGACAAATATCATAACAACAATTTGAAGATATGGGCAAGAGGGATACTA
GAGTGGTAAGTCTTTTATTCACTTTCTAATCCCTTAAAAATAATAGTCCT
CTAGAATAGACATAATGTCATTCGATCCCAATCAAAAATAGTGTGACATT
TTGAAAAATGCCCAAAAACAACTTTTTGTCATAGCTGATGAAGTCTTAAT
CGATAAGCCTTGAAATTTTACAATGTTGTGGGAAATACTAAGATAATTAG
ATAAAAAATTTTTTTTTTCGTTAATTGGGCTAAAAATGTGGCTTCAACTC
AAAATTTGTATCTTTTTTAGAAATGTAAGCCACACAAATTAGATAAGAGA
TCTTAGAATGGGACTTTCTTAACTTGACAGAGGAAAGGTTAAATTAAAAA
AAAAAAGTTAAATGCACATACCTTCTAGCTGTTAAATGTACTTGTTTGCG
GCCTACTTTTCGATAATTTTTAATGTGACTTTGTAAGCCACAAAATTGTA
CTTACAACAAAATTTTTGTAATTTCTTACACTTACTGGTGTTATACTTTG
ATGATTGAGTGCCAAAAACTTAAAAAATGTGAGACATAAAATTTCACCTA
TATTTCACCTATTCACCTATATTCACCTATTCACCTATATTTCCCTTGTG
TAAGCCACATTTTTGCCCACTTAACAAACTGTAAGCCACAAATCAGTGCA
GCTAATGGAAAATTTAGCCCTTTGCTGGCATTGCTGAAAAAAAAGTATAT
TTCTGACTGTTTCCATTATTGAGAACTCAGCCTTCAAAACTTCTTGGTAG
GGTAAGCCAAATGACCAGTAAGCCACATTTTTTACCCACACTTCATTTGC
TTGTAACTCCCCTTTCAGTAAGCTACAAAAATTCGCCCTTTATGCAATGG
ATAGCTAATTTCCTCAGCTTAACCATCAAAGCGATCCTAAGTGTAAGCCA
CGTAATTTTCCCAAGTTATGGTCAATTTAGTGGCTGACAGTAAAAATGTC
ACAAAACAGGGGTTTATTTTTGATTGGGATCATTCCAAAGCGCATGTCAT
GTATTAATTACTTTTTCTGAGTCTTTGAAAATGGAACAACTTTAGATTAG
AATGAAAAACAGAATTAAAATCAGAATATTTGTATTTTTTACTTTAGGTG
CAACAATTTAATTCTTAGTCTACGATTTTATTTGCTTGTTTTTTATACTG
GGATACCCAGCTGGGATTTTCTTTTGACCTTTCAAAATGAACAAATTATC
TCATTTTTAGTTAATTTCGTCATTTATGCATTAATTCTCATGGTATTTAA
TCAAAACATTTTTAGGCATTTGTTAACCCTGTTGCAGCTTCAAGGTCCTC
AGGGCCAGCTCAGGGTGGTCCAAGTATCAAGGATTATCTCAGTCGTCCGA
GACCTTCATGGTATGCAGCATAACTTTTTGATTTCTTTTATAATACTGGG
ATCTTTTATCTCTCTTTTTGTCTTTCTATTTTAAGAACAAGGTCCAAAAA
GAAAAGTAGGGAGTGAAAACACCATCTCATGAAAAGTTTTTTCTTCTTAG
AAATCTATAATGAGTTATTGTTATCTTAGGGATGAATTGAAAGAACAAAT
CAAAGCAACAAGAAAAGGTTCAAGAACTCTTGAACAATTTGAAAAAGAAA
GAAATATGGTATTAATGTTATCACAATTATTTATTATTTCTAAAAAAATC
ATCCACTGAAAGGTAAAATTACACAACTTTCAAGATGTTGTTCCTGGACA
ATTATAAGCCCCCTCTAGCGGACCCTCAATTCACGCAATTTTTTTCGAAA
TTCACACATATTCATGAAGATTTTTCTCAAATTTCACTCAAATCCAATTT
TCAGAAAATCAGGAAATTTTTTGGCAAATATCAGGGAAACATTTGAAAAT
CTGGAAAATTGCACATAATTGGTAAACAAAGAGAAATTTATCCACACACA
AAATAGCCCAGATTCACACTTATTCATGCAATCTTGAAGTGGATTTTCAT
GTCCAGGCTAATTTTTTCAATTCATGCATTCACATAACTTTTTTTTCAAT
TTTCACGCATTCACGCTACTGAAAAAGTTCATTCACGCGTTCACGGAAAC
CGCTGGGGGCCCCAATTATATATATCAAAACTTAGTGTATGGATATTTTA
GTTGACTTGAATCGAAAATTCTGGTTCGATCTGGTTTATTATCCAAACAA
TTTATCTAAAGTCACTGGCACCTTTTCCTTTAATGATCTTATTATGTTTT
TTTTATGTTTTAAACTGTAGGATTACAGAGCTGAGCTTGACAGAGGCAGA
GAAAAGTTTTTCAACTCTGAAAAGAAGGTATACGAGTAACTTTAATCCTA
ATGCTTACAGTATTTTATCAGATGATAATTAAGTCTATTGTGCAAAAGTT
TAAATTTTAGCAATTATTTGAAGGTTTATCTTACTTTGTTTTTTTACAGA
AAAAGAGAAAGAAAAAGCGCACCGTAAGCACATTTGATTATTTAACATGA
AACTACAAGCATTTTAAAATAATTATTTTTCTTATTACAATATATTCTTT
ATCAATGTACAATGTTATTCTCTCTGAGAATAGATTTCCTCTCGATTAGT
TATTGGACCTTGGAGGTAGCTCCAGTAATTCTGCAAACTCTGTGAGATTT
GAAGAATCCCTTAGATAATTTTGTTAATTGAAGTCCATTTTCAGTAAGAG
ATAAATACAAAGTATTGTATTGCATTACAACATTGATAATTGTTATAATA
CCACCATTTTCATATTACACATTTAATTTGTTGTTTTTTTCTTGTTTTGC
TTTTCCTTTAAGCGTTCTTCCTCTTCTTCCTCTTCTACACGTTCATCATC
AACTTCATCAACAAATTCCTCAATCAATAACAGAAGACACAAGGTAAAAG
ATTCCCTTTAAGATTCGAAAAATTACTAACTTTTGTGCCCCTATAGTGGA
TTTTCAGTAGTGGATTTTCAAGATTTTATTAAATTGGTTGGTGCTCATTA
TAATTGGCGCAAAATTTGCTTATATGTTTGGTAAGGGTTGTTTGCTTGGT
AAAAAAAAACAAACATGAAAAGAGGAAATTTGGTAAAAGCTACCAAAATA
TAAAAGAATTGTCAGTGACCACCAATAAGAGTAAAGATAATGAACTCTTG
AAATCAATTCTCGTTGTTGTATTTATAAAATATTGTATATAATATCAGTC
TAACCTTAAGGCATAATTTAAAAGATTCTGTTAANCATGTTTGGTCAGGG
TTGTTTGCTTGGTAAAAAAAAACAAACATGAAAAGAGGAAATTTGGTAAA
AGCTACCAAAATATAAAAGAATTGTCAGTTACCACCAATAAGAGTAAAGA
TAATTAACTCTTGAAATCAATTCTCGTTGTTGTATTTATAAAATATTGTA
TATAATATCAGTCTAACCTTAAGGCATAATTTAAAAGATTCTGTTAACCA
TCTTGTTTGTGACAATAAAAAATAATAAAATAAATTATTTTATTCCTTTC
TTTAGAAATCCAAAAAGAAAAAGAAAAAGCATCACAATAAATCAAAGGTT
TGAACTTTATTATAACTTTAGATATTTTAAATAATTATCTTGAGCTATGG
ATCACTTTTGGTTTCACAATTTACAAAACGAAAGTGCTTTGTATCTCACA
CGATAAAAAAACTTTCTCGGATATGCATCTTGGATGTAACTCAGCCCCTA
AACTAACTTGTATATTTTCCTGCTTTCAAATTTTCAAATCATTCTACATT
TTAGAGGAAAGAGCAAAAATATGAGAAATCCGAGTCAGAATCAAGCAGTG
GCGAAGACTGGGTGGAACAGGTATATCTAAATTGGTGGAAGTGAATCTAT
GTATCCTTTTTTGAAAAGTTGCTATATATTGGAAAGTTTCAGTTTCTTAC
TATATGCATTATTGAAAGATTGGTTCGTCTTTCAAAATGAATTTACTTTA
ACAAAATCACACTAAATTGTAACAAAACTTGGAGCAAAATTTAGTGGGTG
TTTTCATCAAATATTGGTTTTTGAACGGTGAACCCCAGGCCTCATCTGTC
TCATTAACTTAAACTTTGATTGTTTTATTAAGGAAAATCATGGACATTTG
AACAGAGATGAAAGTAGAAGTAACTCAAACACAGAAAGGCATGATGAAAA
GGTGTGTTGAATCTCCTTAGACTAAATTGATTTCTATTCAGGGTTCACAG
TTCTACCTTCTTAGAGGGATTCCTTTCCTGCTGTAAAAAAGAGGTATTTC
GGTGTCAATAAAACAGCAAGATTCTGGTCTCGAAGAATTCTGTTTTAGAA
GTAAACTTGATTCAAGCACTGTACAACTTATAAATATGGTTATAAATTGA
TGTAATATCCATATTTCTTTACAATTTTATAGAAAAGGAAAAAAAGGAAA
AGGAAGAAACGAGAGCATTGAAAAATTGACAAATGAGACATAGTTCATGA
TGCTAGTCGACTCAAACGCAATATATTACATCCAGAACCTGCCAGAACGT
CTCTTGTACTGATTTTTTCATGGCTTTATTTTCTTGTCTACTTTGAAATG
GGAAGCCAATCCGAAGTGTATTGACCTTAACCATTTGTTGTCTCAATGGA
AACAAGAAGATATTAATTTTCAATAACTAGAAAAATGACATAGAGCAAAG
ATAATCACCAAGAAGTTTGAACTTGGACAGTTTTTCATCATTTTATCTAT
AATGCAAACTCCATCGTATTTTAAATAGAGATAGTTTATATATATTTTAG
GATAATCTGATATAAATATTTGTGTACAAGAAAACTATATGAATTTGTTG
ATCAAATAAAAAAATGTATGAATTTGTATATCAAATCTGCTGAAGGTACA
ACTTAAAAAAGATAAAGATAATATCAAAAATGTTTTTATGGTCATATCTT
AGTATTCAAAGCTCTTCCGTCTCCAAATTTAAAAGAAATTCTGCATCGTT
TGAAGAATCTTCGATAATTTGTTGTTCAAAGTCCACTGTTGTCTAAGATA
AATACTTTGCTTTGATAACTGCTGTCATCATTAGAGTGTGTAGTTTTGAC
TGAATTAAAACACATGGCAGGTTCATAATGTCACAACCTGGTTCATTCGT
TTATACTATCTAATCAAGTTGTCACAATTTACAATTTTTTTCGCTTCAGA
TAAACAAAAACAAATGAATTATACTAAAAAGCAAAATGTTGAAATGGATT
ATTAATGGAGTATGTCAATGGATCTAAGAAGTTGAACAGCTTTGTCTTAT
TGTTGTCGTTATGGTAATTTCCTCTTTTGAAAGAAGTCATCAATGGAACC
TCTGGCAGATGTTTGTACAACCCCTTTTCACAAACCCACCCAAAATATCG
TCCCAGTGGAAATTGTTATCTAATTTTTGTCCCCACTGAAAATAATCAAA
NTAAAAAGAAAGTACTTTGTATCTCACACGATAAAAAAACTTTCTCGGAT
ATGCATCTTGGATGTAACTCAGCCCCTAGACTAACTTGTATATTTTCCTG
CTTTCAAATTTTCAAATCATTCTACATTTTAGAGGAAAGAGCAAAAATAT
GAGAAATCCGAGTCAGAATCAAGCAGTGGTGAAGACAGGGTGGAACAGGT
ATATCTAAATTGGTGGAAGTGAATCTATGTATCCTTTTTTGAAAAGTTGC
TATATATTGGAAAGTTTCAATTTCTTACCATGCATTATTGAAAGATTGGT
TCGTCTTTCAAAATGAATTTACTTTAACAAAATCACACTGAATTGTAACA
AAACTTGGAGCAAAATTTAGTGGGTGTTTTCGTCAAATATTGGTTTTTGA
ACGGTGAACCCAAGGCCTCGTCTATCTCATTAACTTAAACTTCGATTGTT
TTATTAAGGAAAATCATGGACATTTGAACAGAGATGAGAGTAGAAATAAC
TCAGACACAGAAAGGCATGGTGAAAAGGTGTGTTGAATCTCCTCAGACTA
AATTGATTTCTATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029702XLOC_029702Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046541-exon-scaffold_113-1575043694:273751..273855TCONS_00046541-exon-scaffold_113-1575043694:273751..273855Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1575043694:272396..272490TCONS_00046541-exon-scaffold_113-1575043694:272396..272490Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1575043694:272148..272226TCONS_00046541-exon-scaffold_113-1575043694:272148..272226Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1575043694:271479..271535TCONS_00046541-exon-scaffold_113-1575043694:271479..271535Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1575043694:271333..271356TCONS_00046541-exon-scaffold_113-1575043694:271333..271356Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1575043694:270913..270993TCONS_00046541-exon-scaffold_113-1575043694:270913..270993Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1575043694:270259..270300TCONS_00046541-exon-scaffold_113-1575043694:270259..270300Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1575043694:269986..270051TCONS_00046541-exon-scaffold_113-1575043694:269986..270051Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1575043694:269711..269723TCONS_00046541-exon-scaffold_113-1575043694:269711..269723Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1575043694:267841..267934TCONS_00046541-exon-scaffold_113-1575043694:267841..267934Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1510915933:273751..273855TCONS_00046541-exon-scaffold_113-1510915933:273751..273855Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1510915933:272396..272490TCONS_00046541-exon-scaffold_113-1510915933:272396..272490Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1510915933:272148..272226TCONS_00046541-exon-scaffold_113-1510915933:272148..272226Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1510915933:271479..271535TCONS_00046541-exon-scaffold_113-1510915933:271479..271535Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1510915933:271333..271356TCONS_00046541-exon-scaffold_113-1510915933:271333..271356Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1510915933:270913..270993TCONS_00046541-exon-scaffold_113-1510915933:270913..270993Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1510915933:270259..270300TCONS_00046541-exon-scaffold_113-1510915933:270259..270300Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1510915933:269986..270051TCONS_00046541-exon-scaffold_113-1510915933:269986..270051Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1510915933:269711..269723TCONS_00046541-exon-scaffold_113-1510915933:269711..269723Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1510915933:267841..267934TCONS_00046541-exon-scaffold_113-1510915933:267841..267934Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1491911889:273751..273855TCONS_00046541-exon-scaffold_113-1491911889:273751..273855Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1491911889:272396..272490TCONS_00046541-exon-scaffold_113-1491911889:272396..272490Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1491911889:272148..272226TCONS_00046541-exon-scaffold_113-1491911889:272148..272226Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1491911889:271479..271535TCONS_00046541-exon-scaffold_113-1491911889:271479..271535Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1491911889:271333..271356TCONS_00046541-exon-scaffold_113-1491911889:271333..271356Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1491911889:270913..270993TCONS_00046541-exon-scaffold_113-1491911889:270913..270993Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1491911889:270259..270300TCONS_00046541-exon-scaffold_113-1491911889:270259..270300Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1491911889:269986..270051TCONS_00046541-exon-scaffold_113-1491911889:269986..270051Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1491911889:269711..269723TCONS_00046541-exon-scaffold_113-1491911889:269711..269723Clytia hemisphaericaexon
TCONS_00046541-exon-scaffold_113-1491911889:267841..267934TCONS_00046541-exon-scaffold_113-1491911889:267841..267934Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_113supercontigscaffold_113:267841..273855 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.18128	10.3142	4.87843	2.7641	10.7164	9.94358	10.2648	6.80673	12.607	7.16054	5.92623	6.12707	5.27683	6.07593	6.81458	6.657	13.938	12.9297	8.43884	6.65097	11.8153	6.54941	14.0004	17.6907	1.58443	2.47987	15.0459	12.004	9.40841	10.6316
Blast
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BLAST of TCONS_00046541 vs. Swiss-Prot (Human)
Match: F133B (Protein FAM133B OS=Homo sapiens GN=FAM133B PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.233e-24
Identity = 43/81 (53.09%), Postives = 65/81 (80.25%), Query Frame = 1 
Query:   82 MGKRDTRVAFVNPVAASRSSGPAQG-GPSIKDYLSRPRPSWDELKEQIKATRKGSRTLEQFEKERNMDYRAELDRGREKFF 321
            MGKRD RVA++NP+A +RS GP Q  GP+I+DYL+RPRP+W+E+KEQ++  +KGS+ L +FE++ N +++ EL++ REK  
Sbjct:    1 MGKRDNRVAYMNPIAMARSRGPIQSSGPTIQDYLNRPRPTWEEVKEQLEKKKKGSKALAEFEEKMNENWKKELEKHREKLL 81
The following BLAST results are available for this feature:
BLAST of TCONS_00046541 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
F133B1.233e-2453.09Protein FAM133B OS=Homo sapiens GN=FAM133B PE=1 SV... [more]
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