TCONS_00046542 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00046542
Unique Name	TCONS_00046542
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	812

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_113:269231..273856-

transcript sequence

>TCONS_00046542 ID=TCONS_00046542|Name=TCONS_00046542|organism=Clytia hemisphaerica|type=transcript|length=812bp
tttctttcagatttttttttgaaataattatatTACAAAATCATAATGAG
ATTGACAAATATCATAACAACAATTTGAAGATATGGGCAAGAGGGATACT
AGAGTGgcatttGTTAACCCTGTTGCAGCTTCAAGGTCCTCAGGGCCAGC
TCAGGGTGGTCCAAGTATCAAGGATTATCTCAGTCGTCCGAGACCTTCAT
GGGATGAATTGAAAGAACAAATCAAAGCAACAAGAAAAGGTTCAAGAACT
CTtgaacaatttgaaaaagaaagaaatatgGATTACAGAGCTGAGCTTGA
CAGAGGCagagaaaagtttttcaactctgaaaagAAGaaaaagagaaaga
aaaagcgCACCCGTTCTTCCTCTTCTTCCTCTTCTACACGTTCATCATCA
ACTTCATCAACAAATTCCTCAATCAATAACAGAAGACACAAGaaatccaa
aaagaaaaagaaaaagcatcACAATAAATCAAAGAGGAAAGAGCAAAAAT
ATGAGAAATCCGAGTCAGAATCAAGCAGTGGCGAAGACTGGGTGGAACAG
GAAAATCATGGACATTTGAACAGAGATGAAAGTAGAAGTAACTCAAACAC
AGAAAGGCATGATGAAAAGaaaaggaaaaaaaggaaaaggaagaaACGAG
AGCattgaaaaattgacaaatgAGACATAGTTCATGATGCTAGTCGACTC
AAACGCAATATATTACATCCAGAACCTGCCAGAACGTCTCTTGTACTGAT
TTTTTCATGGCTTTATTTTCTTGTCTACTTTGAAATGGGAAGCCAATCCG
AAGTGTATTGAC

Run BLAST on NCBI

transcript from alignment at scaffold_113:269231..273856-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00046542 ID=TCONS_00046542|Name=TCONS_00046542|organism=Clytia hemisphaerica|type=transcript|length=4626bp|location=Sequence derived from alignment at scaffold_113:269231..273856- (Clytia hemisphaerica)
TTTCTTTCAGATTTTTTTTTGAAATAATTATATTACAAAATCATAATGAG
ATTGACAAATATCATAACAACAATTTGAAGATATGGGCAAGAGGGATACT
AGAGTGGTAAGTCTTTTATTCACTTTCTAATCCCTTAAAAATAATAGTCC
TCTAGAATAGACATAATGTCATTCGATCCCAATCAAAAATAGTGTGACAT
TTTGAAAAATGCCCAAAAACAACTTTTTGTCATAGCTGATGAAGTCTTAA
TCGATAAGCCTTGAAATTTTACAATGTTGTGGGAAATACTAAGATAATTA
GATAAAAAATTTTTTTTTTCGTTAATTGGGCTAAAAATGTGGCTTCAACT
CAAAATTTGTATCTTTTTTAGAAATGTAAGCCACACAAATTAGATAAGAG
ATCTTAGAATGGGACTTTCTTAACTTGACAGAGGAAAGGTTAAATTAAAA
AAAAAAAGTTAAATGCACATACCTTCTAGCTGTTAAATGTACTTGTTTGC
GGCCTACTTTTCGATAATTTTTAATGTGACTTTGTAAGCCACAAAATTGT
ACTTACAACAAAATTTTTGTAATTTCTTACACTTACTGGTGTTATACTTT
GATGATTGAGTGCCAAAAACTTAAAAAATGTGAGACATAAAATTTCACCT
ATATTTCACCTATTCACCTATATTCACCTATTCACCTATATTTCCCTTGT
GTAAGCCACATTTTTGCCCACTTAACAAACTGTAAGCCACAAATCAGTGC
AGCTAATGGAAAATTTAGCCCTTTGCTGGCATTGCTGAAAAAAAAGTATA
TTTCTGACTGTTTCCATTATTGAGAACTCAGCCTTCAAAACTTCTTGGTA
GGGTAAGCCAAATGACCAGTAAGCCACATTTTTTACCCACACTTCATTTG
CTTGTAACTCCCCTTTCAGTAAGCTACAAAAATTCGCCCTTTATGCAATG
GATAGCTAATTTCCTCAGCTTAACCATCAAAGCGATCCTAAGTGTAAGCC
ACGTAATTTTCCCAAGTTATGGTCAATTTAGTGGCTGACAGTAAAAATGT
CACAAAACAGGGGTTTATTTTTGATTGGGATCATTCCAAAGCGCATGTCA
TGTATTAATTACTTTTTCTGAGTCTTTGAAAATGGAACAACTTTAGATTA
GAATGAAAAACAGAATTAAAATCAGAATATTTGTATTTTTTACTTTAGGT
GCAACAATTTAATTCTTAGTCTACGATTTTATTTGCTTGTTTTTTATACT
GGGATACCCAGCTGGGATTTTCTTTTGACCTTTCAAAATGAACAAATTAT
CTCATTTTTAGTTAATTTCGTCATTTATGCATTAATTCTCATGGTATTTA
ATCAAAACATTTTTAGGCATTTGTTAACCCTGTTGCAGCTTCAAGGTCCT
CAGGGCCAGCTCAGGGTGGTCCAAGTATCAAGGATTATCTCAGTCGTCCG
AGACCTTCATGGTATGCAGCATAACTTTTTGATTTCTTTTATAATACTGG
GATCTTTTATCTCTCTTTTTGTCTTTCTATTTTAAGAACAAGGTCCAAAA
AGAAAAGTAGGGAGTGAAAACACCATCTCATGAAAAGTTTTTTCTTCTTA
GAAATCTATAATGAGTTATTGTTATCTTAGGGATGAATTGAAAGAACAAA
TCAAAGCAACAAGAAAAGGTTCAAGAACTCTTGAACAATTTGAAAAAGAA
AGAAATATGGTATTAATGTTATCACAATTATTTATTATTTCTAAAAAAAT
CATCCACTGAAAGGTAAAATTACACAACTTTCAAGATGTTGTTCCTGGAC
AATTATAAGCCCCCTCTAGCGGACCCTCAATTCACGCAATTTTTTTCGAA
ATTCACACATATTCATGAAGATTTTTCTCAAATTTCACTCAAATCCAATT
TTCAGAAAATCAGGAAATTTTTTGGCAAATATCAGGGAAACATTTGAAAA
TCTGGAAAATTGCACATAATTGGTAAACAAAGAGAAATTTATCCACACAC
AAAATAGCCCAGATTCACACTTATTCATGCAATCTTGAAGTGGATTTTCA
TGTCCAGGCTAATTTTTTCAATTCATGCATTCACATAACTTTTTTTTCAA
TTTTCACGCATTCACGCTACTGAAAAAGTTCATTCACGCGTTCACGGAAA
CCGCTGGGGGCCCCAATTATATATATCAAAACTTAGTGTATGGATATTTT
AGTTGACTTGAATCGAAAATTCTGGTTCGATCTGGTTTATTATCCAAACA
ATTTATCTAAAGTCACTGGCACCTTTTCCTTTAATGATCTTATTATGTTT
TTTTTATGTTTTAAACTGTAGGATTACAGAGCTGAGCTTGACAGAGGCAG
AGAAAAGTTTTTCAACTCTGAAAAGAAGGTATACGAGTAACTTTAATCCT
AATGCTTACAGTATTTTATCAGATGATAATTAAGTCTATTGTGCAAAAGT
TTAAATTTTAGCAATTATTTGAAGGTTTATCTTACTTTGTTTTTTTACAG
AAAAAGAGAAAGAAAAAGCGCACCGTAAGCACATTTGATTATTTAACATG
AAACTACAAGCATTTTAAAATAATTATTTTTCTTATTACAATATATTCTT
TATCAATGTACAATGTTATTCTCTCTGAGAATAGATTTCCTCTCGATTAG
TTATTGGACCTTGGAGGTAGCTCCAGTAATTCTGCAAACTCTGTGAGATT
TGAAGAATCCCTTAGATAATTTTGTTAATTGAAGTCCATTTTCAGTAAGA
GATAAATACAAAGTATTGTATTGCATTACAACATTGATAATTGTTATAAT
ACCACCATTTTCATATTACACATTTAATTTGTTGTTTTTTTCTTGTTTTG
CTTTTCCTTTAAGCGTTCTTCCTCTTCTTCCTCTTCTACACGTTCATCAT
CAACTTCATCAACAAATTCCTCAATCAATAACAGAAGACACAAGGTAAAA
GATTCCCTTTAAGATTCGAAAAATTACTAACTTTTGTGCCCCTATAGTGG
ATTTTCAGTAGTGGATTTTCAAGATTTTATTAAATTGGTTGGTGCTCATT
ATAATTGGCGCAAAATTTGCTTATATGTTTGGTAAGGGTTGTTTGCTTGG
TAAAAAAAAACAAACATGAAAAGAGGAAATTTGGTAAAAGCTACCAAAAT
ATAAAAGAATTGTCAGTGACCACCAATAAGAGTAAAGATAATGAACTCTT
GAAATCAATTCTCGTTGTTGTATTTATAAAATATTGTATATAATATCAGT
CTAACCTTAAGGCATAATTTAAAAGATTCTGTTAANCATGTTTGGTCAGG
GTTGTTTGCTTGGTAAAAAAAAACAAACATGAAAAGAGGAAATTTGGTAA
AAGCTACCAAAATATAAAAGAATTGTCAGTTACCACCAATAAGAGTAAAG
ATAATTAACTCTTGAAATCAATTCTCGTTGTTGTATTTATAAAATATTGT
ATATAATATCAGTCTAACCTTAAGGCATAATTTAAAAGATTCTGTTAACC
ATCTTGTTTGTGACAATAAAAAATAATAAAATAAATTATTTTATTCCTTT
CTTTAGAAATCCAAAAAGAAAAAGAAAAAGCATCACAATAAATCAAAGGT
TTGAACTTTATTATAACTTTAGATATTTTAAATAATTATCTTGAGCTATG
GATCACTTTTGGTTTCACAATTTACAAAACGAAAGTGCTTTGTATCTCAC
ACGATAAAAAAACTTTCTCGGATATGCATCTTGGATGTAACTCAGCCCCT
AAACTAACTTGTATATTTTCCTGCTTTCAAATTTTCAAATCATTCTACAT
TTTAGAGGAAAGAGCAAAAATATGAGAAATCCGAGTCAGAATCAAGCAGT
GGCGAAGACTGGGTGGAACAGGTATATCTAAATTGGTGGAAGTGAATCTA
TGTATCCTTTTTTGAAAAGTTGCTATATATTGGAAAGTTTCAGTTTCTTA
CTATATGCATTATTGAAAGATTGGTTCGTCTTTCAAAATGAATTTACTTT
AACAAAATCACACTAAATTGTAACAAAACTTGGAGCAAAATTTAGTGGGT
GTTTTCATCAAATATTGGTTTTTGAACGGTGAACCCCAGGCCTCATCTGT
CTCATTAACTTAAACTTTGATTGTTTTATTAAGGAAAATCATGGACATTT
GAACAGAGATGAAAGTAGAAGTAACTCAAACACAGAAAGGCATGATGAAA
AGGTGTGTTGAATCTCCTTAGACTAAATTGATTTCTATTCAGGGTTCACA
GTTCTACCTTCTTAGAGGGATTCCTTTCCTGCTGTAAAAAAGAGGTATTT
CGGTGTCAATAAAACAGCAAGATTCTGGTCTCGAAGAATTCTGTTTTAGA
AGTAAACTTGATTCAAGCACTGTACAACTTATAAATATGGTTATAAATTG
ATGTAATATCCATATTTCTTTACAATTTTATAGAAAAGGAAAAAAAGGAA
AAGGAAGAAACGAGAGCATTGAAAAATTGACAAATGAGACATAGTTCATG
ATGCTAGTCGACTCAAACGCAATATATTACATCCAGAACCTGCCAGAACG
TCTCTTGTACTGATTTTTTCATGGCTTTATTTTCTTGTCTACTTTGAAAT
GGGAAGCCAATCCGAAGTGTATTGAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029702	XLOC_029702	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_113	supercontig	scaffold_113:269231..273856 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.1905	12.2339	3.20664	1.24012	14.9423	11.0127	10.0246	12.561	8.90955	7.27535	6.89273	9.01368	4.47889	6.82005	7.61389	6.85654	11.7779	12.5361	2.95277	3.79702	7.69942	8.03047	19.6195	15.9759	7.41507	6.50156	6.10203	4.13175	12.8185	13.2399

Blast

[Close]

BLAST of TCONS_00046542 vs. Swiss-Prot (Human)
Match: F133B (Protein FAM133B OS=Homo sapiens GN=FAM133B PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.913e-24
Identity = 43/81 (53.09%), Postives = 65/81 (80.25%), Query Frame = 2

Query:   83 MGKRDTRVAFVNPVAASRSSGPAQG-GPSIKDYLSRPRPSWDELKEQIKATRKGSRTLEQFEKERNMDYRAELDRGREKFF 322
            MGKRD RVA++NP+A +RS GP Q  GP+I+DYL+RPRP+W+E+KEQ++  +KGS+ L +FE++ N +++ EL++ REK  
Sbjct:    1 MGKRDNRVAYMNPIAMARSRGPIQSSGPTIQDYLNRPRPTWEEVKEQLEKKKKGSKALAEFEEKMNENWKKELEKHREKLL 81

The following BLAST results are available for this feature:

BLAST of TCONS_00046542 vs. Swiss-Prot (Human)

BLAST of TCONS_00046542 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
F133B	2.913e-24	53.09	Protein FAM133B OS=Homo sapiens GN=FAM133B PE=1 SV...	[more]

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TCONS_00046542 (transcript) - C. hemisphaerica