TCONS_00046561 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046561
Unique NameTCONS_00046561
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length582

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046561 ID=TCONS_00046561|Name=TCONS_00046561|organism=Clytia hemisphaerica|type=transcript|length=582bp
TTATGTTATTAAATTACTAAGACGCAGGAATAGGACCATTGTGTAAAGAC
TGCAGTGTAAAGAACGGGTCTACCGGAACAAACTACTCTCCGCTCTTGAT
CtactactctgtaccagagtgtatctcatgATTATCGTAGCTTAGTACAC
TCTGTGTGCATTGTCTGCTATGCCGATAATTGCCCGTGTAGAAAGCGATG
TGGAGAAGAGCATACTGTTGGTTGCGTAATGTTTCGGATACCGTATGGAT
GGGAGAGTTATCACGTAATTAAACCAAAATGGCAGGCAGAACGACGAGAC
ATTGTGCAACGAAAGATGAGAGCAAATTTCTGTTTTGGCATGTTCTTGTA
TCAACATTATAGTTTAATATATAGTGTGGAGAAGAAAATCAAACACTGCA
CTGCAATCTGGCTTAGGAAAAGGAATGAAAGGTCAAACACTTAAAACATT
TCATGAAACATGATCAAATAAAATCACCATCAtaacaacaaatttcaaaa
taaacgtTTATTTCATAGCATACTACAACTACCGGGtgcacaaaaaagtt
tctctctttaaagggAATTTTTTCAAGGTCTT
Run BLAST on NCBI

transcript from alignment at scaffold_113:108994..109575

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046561 ID=TCONS_00046561|Name=TCONS_00046561|organism=Clytia hemisphaerica|type=transcript|length=582bp|location=Sequence derived from alignment at scaffold_113:108994..109575 (Clytia hemisphaerica)
AAGACCTTGAAAAAATTccctttaaagagagaaacttttttgtgcaCCCG
GTAGTTGTAGTATGCTATGAAATAAacgtttattttgaaatttgttgtta
TGATGGTGATTTTATTTGATCATGTTTCATGAAATGTTTTAAGTGTTTGA
CCTTTCATTCCTTTTCCTAAGCCAGATTGCAGTGCAGTGTTTGATTTTCT
TCTCCACACTATATATTAAACTATAATGTTGATACAAGAACATGCCAAAA
CAGAAATTTGCTCTCATCTTTCGTTGCACAATGTCTCGTCGTTCTGCCTG
CCATTTTGGTTTAATTACGTGATAACTCTCCCATCCATACGGTATCCGAA
ACATTACGCAACCAACAGTATGCTCTTCTCCACATCGCTTTCTACACGGG
CAATTATCGGCATAGCAGACAATGCACACAGAGTGTACTAAGCTACGATA
ATcatgagatacactctggtacagagtagtaGATCAAGAGCGGAGAGTAG
TTTGTTCCGGTAGACCCGTTCTTTACACTGCAGTCTTTACACAATGGTCC
TATTCCTGCGTCTTAGTAATTTAATAACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029710XLOC_029710Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046561-exon-scaffold_113-1491911889:108994..109575TCONS_00046561-exon-scaffold_113-1491911889:108994..109575Clytia hemisphaericaexon
TCONS_00046561-exon-scaffold_113-1510915933:108994..109575TCONS_00046561-exon-scaffold_113-1510915933:108994..109575Clytia hemisphaericaexon
TCONS_00046561-exon-scaffold_113-1575043694:108994..109575TCONS_00046561-exon-scaffold_113-1575043694:108994..109575Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_113supercontigscaffold_113:108994..109575 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.23649	1.02027	0.753855	0.632168	0.641337	0.202717	0.24457	0.343445	0.320605	0.297841	0.289091	0.190037	0.126515	0	0.324055	0.753482	0.571217	0.731849	0.101109	0.105803	0.0919622	0.269136	0.32717	0.594889	0.10212	0.63798	0.130421	0	0.21114	0.107559
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046561 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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