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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046563 ID=TCONS_00046563|Name=TCONS_00046563|organism=Clytia hemisphaerica|type=transcript|length=1185bp
GTTCGGAATACCAACAGTGAAACGTAGCCATGCTTATTACCTAATGGATA
CTCTCCGCTCCTTAATGTCACGAGCGCCGGATGATgtcaaaaaacgtaaa
gaaatCTTAATCATTATTTTGGTAGCAGATCAACGAAAGGATTACCTGAG
GCAAGTCACTATGGATGTCAACAGTGAATACGAAACGGAAGTCAAGAATG
GTTTGATTCAGGTAATAGTACCAAATGAAAGCTTCTATCCAAACATGTTC
AATTTACCACAACTGTATGGAGATGACCAGAGACGTGTTTATTGGCGTTC
CAAACAATCTCTAGATTACTCATTCTTGTATTACTATTGTAAAGAATTGG
GTGAATATTTTGTGCAACTAGAAGATGACGTCATAGCAGCCAGTCAATAC
TATAGGAAAATGAGAGCTTTCATAAAGAAGAATGAGTATAATAATTGGTC
AGTGTTGGAATTTGGATCTCAAGGTTTCATTGGAATGACATATCGTACCA
AACACCTGAAAACCTTATCCAAATTCATTCGATTCTTTTATTGGACAAGA
CCAGTGGATTGGCTGTTCCGCGATTATAATCAAATCTACTTAAACGGAAA
TCCGTCTAATTTCCGGATAAGACCACCTGTTTTCTTACATGCCGGAAAAT
TCTCATCACTTGATGGGCAGGTTCGGAAACTCGGAAGGGGTGCGAAATCA
GCACAATCTCGAACCGAACGAGAACAGTTACTTCATTGGCCAGGCCAAAG
ACGATATCAATCTAAAGAAGGCAATCCACTCGCAAAAATCACTTCAACTA
TTGACCAGCACTTCGGAAGCAATCGATTAAGAAATCCGTACGGTCCCAAA
GGTGTATTTTGGGCTAAGGGTGTCCATAAGAAAGACAATATAACCATTCA
GTTTAACAAGACGCAGAATATTTCTCAAATAGTGTTCGTGAGTGGACCAG
AAGGGTTTAAGAATGATCGATTTTATACAACCCGGTTGTTTGTTTCATAT
ACTAAACCATCTATTGATGGTTGTAGTGACTTCGAATCTGTGGGAGTATT
TGGTACACCGATTGTTCAATATAAGATTGAAGATGATGTGAAGAGACCAG
TTTGGTGTGTGAGATTGATGCTGGAGAAAGTGATTCAGAAACGATGGATT
ATGGTGGAAGAAATTGCTATCCATGTTGATAAATA Run BLAST on NCBI protein sequence of TCONS_00046563-protein >TCONS_00046563-protein ID=TCONS_00046563-protein|Name=TCONS_00046563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=394bp
FGIPTVKRSHAYYLMDTLRSLMSRAPDDVKKRKEILIIILVADQRKDYLR
QVTMDVNSEYETEVKNGLIQVIVPNESFYPNMFNLPQLYGDDQRRVYWRS
KQSLDYSFLYYYCKELGEYFVQLEDDVIAASQYYRKMRAFIKKNEYNNWS
VLEFGSQGFIGMTYRTKHLKTLSKFIRFFYWTRPVDWLFRDYNQIYLNGN
PSNFRIRPPVFLHAGKFSSLDGQVRKLGRGAKSAQSRTEREQLLHWPGQR
RYQSKEGNPLAKITSTIDQHFGSNRLRNPYGPKGVFWAKGVHKKDNITIQ
FNKTQNISQIVFVSGPEGFKNDRFYTTRLFVSYTKPSIDGCSDFESVGVF
GTPIVQYKIEDDVKRPVWCVRLMLEKVIQKRWIMVEEIAIHVDK Run BLAST on NCBI transcript from alignment at scaffold_113:132872..134056 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046563 ID=TCONS_00046563|Name=TCONS_00046563|organism=Clytia hemisphaerica|type=transcript|length=1185bp|location=Sequence derived from alignment at scaffold_113:132872..134056 (Clytia hemisphaerica)
TATTTATCAACATGGATAGCAATTTCTTCCACCATAATCCATCGTTTCTG
AATCACTTTCTCCAGCATCAATCTCACACACCAAACTGGTCTCTTCACAT
CATCTTCAATCTTATATTGAACAATCGGTGTACCAAATACTCCCACAGAT
TCGAAGTCACTACAACCATCAATAGATGGTTTAGTATATGAAACAAACAA
CCGGGTTGTATAAAATCGATCATTCTTAAACCCTTCTGGTCCACTCACGA
ACACTATTTGAGAAATATTCTGCGTCTTGTTAAACTGAATGGTTATATTG
TCTTTCTTATGGACACCCTTAGCCCAAAATACACCTTTGGGACCGTACGG
ATTTCTTAATCGATTGCTTCCGAAGTGCTGGTCAATAGTTGAAGTGATTT
TTGCGAGTGGATTGCCTTCTTTAGATTGATATCGTCTTTGGCCTGGCCAA
TGAAGTAACTGTTCTCGTTCGGTTCGAGATTGTGCTGATTTCGCACCCCT
TCCGAGTTTCCGAACCTGCCCATCAAGTGATGAGAATTTTCCGGCATGTA
AGAAAACAGGTGGTCTTATCCGGAAATTAGACGGATTTCCGTTTAAGTAG
ATTTGATTATAATCGCGGAACAGCCAATCCACTGGTCTTGTCCAATAAAA
GAATCGAATGAATTTGGATAAGGTTTTCAGGTGTTTGGTACGATATGTCA
TTCCAATGAAACCTTGAGATCCAAATTCCAACACTGACCAATTATTATAC
TCATTCTTCTTTATGAAAGCTCTCATTTTCCTATAGTATTGACTGGCTGC
TATGACGTCATCTTCTAGTTGCACAAAATATTCACCCAATTCTTTACAAT
AGTAATACAAGAATGAGTAATCTAGAGATTGTTTGGAACGCCAATAAACA
CGTCTCTGGTCATCTCCATACAGTTGTGGTAAATTGAACATGTTTGGATA
GAAGCTTTCATTTGGTACTATTACCTGAATCAAACCATTCTTGACTTCCG
TTTCGTATTCACTGTTGACATCCATAGTGACTTGCCTCAGGTAATCCTTT
CGTTGATCTGCTACCAAAATAATGATTAAGatttctttacgttttttgac
ATCATCCGGCGCTCGTGACATTAAGGAGCGGAGAGTATCCATTAGGTAAT
AAGCATGGCTACGTTTCACTGTTGGTATTCCGAAC Coding sequence (CDS) from alignment at scaffold_113:132872..134056 >TCONS_00046563 ID=TCONS_00046563|Name=TCONS_00046563|organism=Clytia hemisphaerica|type=CDS|length=1182bp|location=Sequence derived from alignment at scaffold_113:132872..134056 (Clytia hemisphaerica)
TTTATCAACATGGATAGCAATTTCTTCCACCATAATCCATCGTTTCTGAA
TCACTTTCTCCAGCATCAATCTCACACACCAAACTGGTCTCTTCACATCA
TCTTCAATCTTATATTGAACAATCGGTGTACCAAATACTCCCACAGATTC
GAAGTCACTACAACCATCAATAGATGGTTTAGTATATGAAACAAACAACC
GGGTTGTATAAAATCGATCATTCTTAAACCCTTCTGGTCCACTCACGAAC
ACTATTTGAGAAATATTCTGCGTCTTGTTAAACTGAATGGTTATATTGTC
TTTCTTATGGACACCCTTAGCCCAAAATACACCTTTGGGACCGTACGGAT
TTCTTAATCGATTGCTTCCGAAGTGCTGGTCAATAGTTGAAGTGATTTTT
GCGAGTGGATTGCCTTCTTTAGATTGATATCGTCTTTGGCCTGGCCAATG
AAGTAACTGTTCTCGTTCGGTTCGAGATTGTGCTGATTTCGCACCCCTTC
CGAGTTTCCGAACCTGCCCATCAAGTGATGAGAATTTTCCGGCATGTAAG
AAAACAGGTGGTCTTATCCGGAAATTAGACGGATTTCCGTTTAAGTAGAT
TTGATTATAATCGCGGAACAGCCAATCCACTGGTCTTGTCCAATAAAAGA
ATCGAATGAATTTGGATAAGGTTTTCAGGTGTTTGGTACGATATGTCATT
CCAATGAAACCTTGAGATCCAAATTCCAACACTGACCAATTATTATACTC
ATTCTTCTTTATGAAAGCTCTCATTTTCCTATAGTATTGACTGGCTGCTA
TGACGTCATCTTCTAGTTGCACAAAATATTCACCCAATTCTTTACAATAG
TAATACAAGAATGAGTAATCTAGAGATTGTTTGGAACGCCAATAAACACG
TCTCTGGTCATCTCCATACAGTTGTGGTAAATTGAACATGTTTGGATAGA
AGCTTTCATTTGGTACTATTACCTGAATCAAACCATTCTTGACTTCCGTT
TCGTATTCACTGTTGACATCCATAGTGACTTGCCTCAGGTAATCCTTTCG
TTGATCTGCTACCAAAATAATGATTAAGatttctttacgttttttgacAT
CATCCGGCGCTCGTGACATTAAGGAGCGGAGAGTATCCATTAGGTAATAA
GCATGGCTACGTTTCACTGTTGGTATTCCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046563-exon-scaffold_113-1491911889:132872..134056 | TCONS_00046563-exon-scaffold_113-1491911889:132872..134056 | Clytia hemisphaerica | exon |
| TCONS_00046563-exon-scaffold_113-1510915933:132872..134056 | TCONS_00046563-exon-scaffold_113-1510915933:132872..134056 | Clytia hemisphaerica | exon |
| TCONS_00046563-exon-scaffold_113-1575043694:132872..134056 | TCONS_00046563-exon-scaffold_113-1575043694:132872..134056 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_113 | supercontig | scaffold_113:132872..134056 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006759 | Glyco_transf_54 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016758 | transferase activity, transferring hexosyl groups |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0005975 |
carbohydrate metabolic process |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0016758 |
transferase activity, transferring hexosyl groups |
Blast
BLAST of TCONS_00046563 vs. Swiss-Prot (Human)
Match: MGT4A (Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A OS=Homo sapiens GN=MGAT4A PE=1 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 5.968e-52 Identity = 108/344 (31.40%), Postives = 180/344 (52.33%), Query Frame = 2
Query: 2 FGIPTVKRSHAYYLMDTLRSLMSRA-PDDVKKRKEILIIILVADQRKDYLRQVTMDVNSEYETEVKNGLIQVIVPNESFYPNMFNLPQLYGDDQRRVYWRSKQSLDYSFLYYYCKELGEYFVQLEDDVIAASQYYRKMRAFIKKNEYNNWSVLEFGSQGFIGMTYRTKHLKTLSKFIRFFYWTRPVDWLFR----------DYNQIYLNGNPSNFRI--RPPVFLHAGKFSSLDGQVRKLGRGAKSAQSRTEREQLLHWPGQRRYQSKEGNPLAKITSTIDQHFGSNRLRNPYGPKGVFWAKGVHKKDNITIQFNKTQNISQIVFVSGPEGFKNDRFYTTRLFV 994
GIPTVKR YL++TL SL+ P++ + + +I++ + + DY+ V ++ E+ E+ +GL++VI P ES+YP++ NL + +GD + RV WR+KQ+LDY FL Y +E G Y++QLEDD+I Y+ ++ F + W +LEF GFIG ++ L + +FI FY +P+DWL + + + + +N RI RP +F H G SSL G+++KL T+++ + + NP A++++++ + G + L Y + FWA D I +F+K N+ +F SG + D T + V
Sbjct: 139 MGIPTVKREVKSYLIETLHSLIDNLYPEE---KLDCVIVVFIGETDIDYVHGVVANLEKEFSKEISSGLVEVISPPESYYPDLTNLKETFGDSKERVRWRTKQNLDYCFLMMYAQEKGIYYIQLEDDIIVKQNYFNTIKNFALQLSSEEWMILEFSQLGFIGKMFQAPDLTLIVEFIFMFYKEKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFRPSLFQHVGLHSSLSGKIQKL----------TDKDYM-----KPLLLKIHVNPPAEVSTSLKVYQG-HTLEKTYMGEDFFWAITPIAGDYILFKFDKPVNVESYLFHSGNQEHPGDILLNTTVEV 463
The following BLAST results are available for this feature:
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