TCONS_00046588 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046588
Unique NameTCONS_00046588
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length845

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046588 ID=TCONS_00046588|Name=TCONS_00046588|organism=Clytia hemisphaerica|type=transcript|length=845bp
GGGCACGGTTGTGGCTAAAGAGTAATGGACTTCGTAtctggacttagaaa
ttttcgCAAGTGTTCCGTGCACTTGAACACATATATTGAAAGACCAGAAT
AAGGTTGTTTCAGTTTATAGcaaataataataaattttgAGCGGGAAAGT
TTTTCTTCAGGAGCAGCATGGTCAGCATATGGTTGGATCATTCACTCTAC
ATTACCATATAGTTTGAGCTTTATTAAAGAACAAAAAGTAATAAtgccaa
gaaaaagaaaaaatatagcTTTCAAGAGACTTTTAGCTGAGTCCACAGTT
TGTTCAGGTTTGTATCTTTTATTTATAACTAGCTGATGATTAGTACAATC
GGGTCGGTAGTAGGGCGGGATGTTGATCTCACATTTATGTAGCTAAGATC
TCTGGCACTATTCAATATTTAGCATCAGGCAGTCAGGGGGATGATGATAT
TGAATTCCTATGTAGTGATAAGTTCTCTGCACTATaaactccagcatcaa
aacaatgtccagaaaattttttctaacTTTGTTGGGAAGTCCTTTTCCTG
GCAGTGGCAAATTAATAATTGCAAATTTTGGGTCGGTGGCTGCTTACTCT
ctgaattattaaaaagaaatagatGGCAACTGAACCCTGTTATCGAACCG
ATTATCTTATAATTACAATCAATAAACAAAGTATTGAATCGATAGGTGTT
CGATATAGAGCTTTTGCAGATCACAATACGATGTCATGTTGAAttattat
tctcctgggaagaTGATGAATGAGAAAGTAGTGCATCTCAACGTTGCCTC
AAGGAGTTTGGTGATAAGATTCAGTTACCGCCCGTGATTCAGCCA
Run BLAST on NCBI

transcript from alignment at scaffold_114:134554..135398+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046588 ID=TCONS_00046588|Name=TCONS_00046588|organism=Clytia hemisphaerica|type=transcript|length=845bp|location=Sequence derived from alignment at scaffold_114:134554..135398+ (Clytia hemisphaerica)
GGGCACGGTTGTGGCTAAAGAGTAATGGACTTCGTAtctggacttagaaa
ttttcgCAAGTGTTCCGTGCACTTGAACACATATATTGAAAGACCAGAAT
AAGGTTGTTTCAGTTTATAGcaaataataataaattttgAGCGGGAAAGT
TTTTCTTCAGGAGCAGCATGGTCAGCATATGGTTGGATCATTCACTCTAC
ATTACCATATAGTTTGAGCTTTATTAAAGAACAAAAAGTAATAAtgccaa
gaaaaagaaaaaatatagcTTTCAAGAGACTTTTAGCTGAGTCCACAGTT
TGTTCAGGTTTGTATCTTTTATTTATAACTAGCTGATGATTAGTACAATC
GGGTCGGTAGTAGGGCGGGATGTTGATCTCACATTTATGTAGCTAAGATC
TCTGGCACTATTCAATATTTAGCATCAGGCAGTCAGGGGGATGATGATAT
TGAATTCCTATGTAGTGATAAGTTCTCTGCACTATaaactccagcatcaa
aacaatgtccagaaaattttttctaacTTTGTTGGGAAGTCCTTTTCCTG
GCAGTGGCAAATTAATAATTGCAAATTTTGGGTCGGTGGCTGCTTACTCT
ctgaattattaaaaagaaatagatGGCAACTGAACCCTGTTATCGAACCG
ATTATCTTATAATTACAATCAATAAACAAAGTATTGAATCGATAGGTGTT
CGATATAGAGCTTTTGCAGATCACAATACGATGTCATGTTGAAttattat
tctcctgggaagaTGATGAATGAGAAAGTAGTGCATCTCAACGTTGCCTC
AAGGAGTTTGGTGATAAGATTCAGTTACCGCCCGTGATTCAGCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029734XLOC_029734Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046588-exon-scaffold_114-1491911889:134554..135398TCONS_00046588-exon-scaffold_114-1491911889:134554..135398Clytia hemisphaericaexon
TCONS_00046588-exon-scaffold_114-1510915933:134554..135398TCONS_00046588-exon-scaffold_114-1510915933:134554..135398Clytia hemisphaericaexon
TCONS_00046588-exon-scaffold_114-1575043694:134554..135398TCONS_00046588-exon-scaffold_114-1575043694:134554..135398Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_114supercontigscaffold_114:134554..135398 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.384511	1.09086	0.795463	0.0826693	0.304707	0.143435	0.207622	0.111987	0	0	0.115137	0.161712	0.0426674	0.0329603	0.356026	0.129881	0.136757	0	0.306926	0.201186	0.0878353	0.0675214	0.138529	0.263265	0.129412	0.748104	0.717922	0.191392	0.363754
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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